Rmu_sc0006655.1_g000002

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006655.1
N/A
Physical Location & Seq
Reverse (-)
1099 .. 1866
768 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 591 bp
atgtggaggttgactgggaccgtagaggtacaaccaaggggtgaccgttttctatttatgttcacccacaaaagggatgttgctagagtaatgaagggaggaccgtggggcttccaacgtgccatgactctcctgaatgactacgatgggttttcggagatctctgcagtgaggttggattttgtttggatctgggttacgcttgatggcatacctacggttattttgacggaacctaccatccggttggttggtgggacaattggcgagcgatgccctagggtggacgagttgaaagctgatgctagggcggagcagagatcgcagacagcgggtggaccgtttgatcctgcccctgtctttagggaaaatgtccagccctctatctcttctccattgctttctactttcaaggtccctggcttgtcgaagaggaaaccagtaagattcgtgagcttcctgcgcttgcatcttctggtactgagggtacctccacccaaactcaggtggtggggatgtgtcggcccagagctgaggatgatcctatggatggtaagtgagccaagcatggtttggctttggtgccggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

196

Amino Acids

22.48

Weight (kDa)

10.19

Isoelectric Point (pI)

48.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 487
AccB1I GGYRCC 2 cut(s) 487, 582
AciI CCGC 2 cut(s) 311, 332
AclWI GGATC 3 cut(s) 197, 341, 535
AfaI GTAC 3 cut(s) 30, 480, 489
AfiI CCNNNNNNNGG 5 cut(s) 72, 73, 283, 504, 550
AgsI TTSAA 2 cut(s) 295, 412
AjnI CCWGG 1 cut(s) 418
AloI GAACNNNNNNTCC 2 cut(s) 225, 257
AluBI AGCT 3 cut(s) 299, 456, 532
AluI AGCT 3 cut(s) 299, 456, 532
AlwI GGATC 3 cut(s) 197, 341, 535
AoxI GGCC 1 cut(s) 523
Asp718I GGTACC 1 cut(s) 487
AspA2I CCTAGG 1 cut(s) 278
AspLEI GCGC 1 cut(s) 465
AspS9I GGNCC 5 cut(s) 18, 101, 338, 415, 524
AsuHPI GGTGA 2 cut(s) 53, 55
AvaII GGWCC 4 cut(s) 18, 101, 338, 415
AvrII CCTAGG 1 cut(s) 278
BanI GGYRCC 2 cut(s) 487, 582
BbvCI CCTCAGC 1 cut(s) 533
BccI CCATC 4 cut(s) 140, 200, 248, 544
BciT130I CCWGG 1 cut(s) 420
BfaI CTAG 3 cut(s) 84, 279, 306
BfmI CTRYAG 1 cut(s) 165
BglII AGATCT 1 cut(s) 159
BlnI CCTAGG 1 cut(s) 278
Bme1390I CCNGG 1 cut(s) 420
Bme18I GGWCC 4 cut(s) 18, 101, 338, 415
BmgT120I GGNCC 5 cut(s) 18, 101, 338, 415, 524
BmiI GGNNCC 5 cut(s) 19, 234, 417, 489, 584
BmrFI CCNGG 1 cut(s) 420
BmrI ACTGGG 1 cut(s) 24
BmsI GCATC 3 cut(s) 263, 292, 478
BmuI ACTGGG 1 cut(s) 24
BplI GAGNNNNNCTC 2 cut(s) 475, 507
Bpu10I CCTNAGC 1 cut(s) 533
BsaJI CCNNGG 4 cut(s) 35, 104, 278, 418
BsaWI WCCGGW 1 cut(s) 243
Bsc4I CCNNNNNNNGG 5 cut(s) 72, 73, 283, 504, 550
Bse118I RCCGGY 1 cut(s) 585
Bse1I ACTGG 2 cut(s) 19, 440
Bse3DI GCAATG 1 cut(s) 395
BseBI CCWGG 1 cut(s) 420
BseDI CCNNGG 4 cut(s) 35, 104, 278, 418
BseGI GGATG 5 cut(s) 82, 240, 521, 543, 555
BseLI CCNNNNNNNGG 5 cut(s) 72, 73, 283, 504, 550
BseMI GCAATG 1 cut(s) 395
BseMII CTCAG 3 cut(s) 473, 517, 524
BseNI ACTGG 2 cut(s) 19, 440
BshFI GGCC 1 cut(s) 525
BshNI GGYRCC 2 cut(s) 487, 582
BsiSI CCGG 2 cut(s) 244, 586
BslFI GGGAC 3 cut(s) 31, 271, 401
BslI CCNNNNNNNGG 5 cut(s) 72, 73, 283, 504, 550
BsmFI GGGAC 3 cut(s) 31, 271, 401
BsnI GGCC 1 cut(s) 525
Bsp143I GATC 5 cut(s) 159, 189, 320, 346, 540
BspACI CCGC 2 cut(s) 311, 332
BspANI GGCC 1 cut(s) 525
BspCNI CTCAG 3 cut(s) 474, 516, 525
BspLI GGNNCC 5 cut(s) 19, 234, 417, 489, 584
BspMAI CTGCAG 1 cut(s) 169
BspPI GGATC 3 cut(s) 197, 341, 535
BspT107I GGYRCC 2 cut(s) 487, 582
BsrDI GCAATG 1 cut(s) 395
BsrFI RCCGGY 1 cut(s) 585
BsrI ACTGG 2 cut(s) 19, 440
BssAI RCCGGY 1 cut(s) 585
BssECI CCNNGG 4 cut(s) 35, 104, 278, 418
BssMI GATC 5 cut(s) 159, 189, 320, 346, 540
BssT1I CCWWGG 2 cut(s) 35, 278
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 5 cut(s) 22, 47, 105, 220, 342
Bst6I CTCTTC 2 cut(s) 394, 425
BstC8I GCNNGC 2 cut(s) 269, 467
BstDEI CTNAG 3 cut(s) 482, 503, 533
BstDSI CCRYGG 1 cut(s) 104
BstEII GGTNACC 1 cut(s) 41
BstF5I GGATG 5 cut(s) 82, 240, 521, 543, 555
BstHHI GCGC 1 cut(s) 465
BstKTI GATC 5 cut(s) 162, 192, 323, 349, 543
BstMBI GATC 5 cut(s) 159, 189, 320, 346, 540
BstMWI GCNNNNNNNGC 3 cut(s) 273, 322, 462
BstNI CCWGG 1 cut(s) 420
BstPI GGTNACC 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 418
BstSFI CTRYAG 1 cut(s) 165
BstX2I RGATCY 2 cut(s) 159, 189
BstXI CCANNNNNNTGG 1 cut(s) 247
BstYI RGATCY 2 cut(s) 159, 189
BsuRI GGCC 1 cut(s) 525
BtgI CCRYGG 1 cut(s) 104
BtgZI GCGATG 1 cut(s) 286
BtsCI GGATG 5 cut(s) 82, 240, 521, 543, 555
BtsI GCAGTG 1 cut(s) 174
BtsIMutI CAGTG 1 cut(s) 174
Cac8I GCNNGC 2 cut(s) 269, 467
CfoI GCGC 1 cut(s) 465
Cfr10I RCCGGY 1 cut(s) 585
Cfr13I GGNCC 5 cut(s) 18, 101, 338, 415, 524
Csp6I GTAC 3 cut(s) 29, 479, 488
CviAII CATG 2 cut(s) 124, 568
CviJI RGCY 9 cut(s) 111, 299, 379, 423, 456, 525, 532, 562, 577
CviKI_1 RGCY 9 cut(s) 111, 299, 379, 423, 456, 525, 532, 562, 577
CviQI GTAC 3 cut(s) 29, 479, 488
DdeI CTNAG 3 cut(s) 482, 503, 533
DpnI GATC 5 cut(s) 161, 191, 322, 348, 542
DpnII GATC 5 cut(s) 159, 189, 320, 346, 540
Eam1104I CTCTTC 2 cut(s) 394, 425
EarI CTCTTC 2 cut(s) 394, 425
EciI GGCGGA 1 cut(s) 326
Eco130I CCWWGG 2 cut(s) 35, 278
Eco47I GGWCC 4 cut(s) 18, 101, 338, 415
Eco91I GGTNACC 1 cut(s) 41
EcoO109I RGGNCCY 1 cut(s) 415
EcoO65I GGTNACC 1 cut(s) 41
EcoRII CCWGG 1 cut(s) 418
EcoT14I CCWWGG 2 cut(s) 35, 278
ErhI CCWWGG 2 cut(s) 35, 278
FaeI CATG 2 cut(s) 127, 571
FaiI YATR 5 cut(s) 59, 125, 212, 547, 569
FaqI GGGAC 3 cut(s) 31, 271, 401
FatI CATG 2 cut(s) 123, 567
FauI CCCGC 1 cut(s) 325
FokI GGATG 5 cut(s) 89, 227, 528, 550, 562
FspBI CTAG 3 cut(s) 84, 279, 306
GlaI GCGC 1 cut(s) 464
HaeIII GGCC 1 cut(s) 525
HapII CCGG 2 cut(s) 244, 586
HhaI GCGC 1 cut(s) 465
Hin1II CATG 2 cut(s) 127, 571
Hin6I GCGC 1 cut(s) 463
HinP1I GCGC 1 cut(s) 463
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HinfI GANTC 2 cut(s) 127, 447
HpaII CCGG 2 cut(s) 244, 586
HphI GGTGA 2 cut(s) 53, 55
Hpy166II GTNNAC 4 cut(s) 12, 63, 286, 338
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 2 cut(s) 133, 451
Hpy8I GTNNAC 4 cut(s) 12, 63, 286, 338
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 5 cut(s) 22, 47, 105, 220, 342
HpyCH4IV ACGT 1 cut(s) 118
HpyCH4V TGCA 2 cut(s) 167, 469
HpyF10VI GCNNNNNNNGC 3 cut(s) 273, 322, 462
HpyF3I CTNAG 3 cut(s) 482, 503, 533
HpySE526I ACGT 1 cut(s) 118
Hsp92II CATG 2 cut(s) 127, 571
HspAI GCGC 1 cut(s) 463
KpnI GGTACC 1 cut(s) 491
Kzo9I GATC 5 cut(s) 159, 189, 320, 346, 540
LmnI GCTCC 1 cut(s) 313
LweI GCATC 3 cut(s) 263, 292, 478
MaeI CTAG 3 cut(s) 84, 279, 306
MaeII ACGT 1 cut(s) 118
MaeIII GTNAC 2 cut(s) 41, 196
MalI GATC 5 cut(s) 161, 191, 322, 348, 542
MboI GATC 5 cut(s) 159, 189, 320, 346, 540
MboII GAAGA 3 cut(s) 381, 442, 464
MfeI CAATTG 1 cut(s) 261
MflI RGATCY 2 cut(s) 159, 189
MluCI AATT 1 cut(s) 261
MlyI GAGTC 1 cut(s) 121
MmeI TCCRAC 2 cut(s) 139, 156
MnlI CCTC 8 cut(s) 19, 92, 165, 391, 426, 477, 501, 528
MspA1I CMGCKG 1 cut(s) 332
MspI CCGG 2 cut(s) 244, 586
MspR9I CCNGG 1 cut(s) 420
MunI CAATTG 1 cut(s) 261
MvaI CCWGG 1 cut(s) 420
MwoI GCNNNNNNNGC 3 cut(s) 273, 322, 462
NdeII GATC 5 cut(s) 159, 189, 320, 346, 540
NlaIII CATG 2 cut(s) 127, 571
NlaIV GGNNCC 5 cut(s) 19, 234, 417, 489, 584
NmuCI GTSAC 1 cut(s) 41
PfeI GAWTC 1 cut(s) 447
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
PpuMI RGGWCCY 1 cut(s) 415
Psp5II RGGWCCY 1 cut(s) 415
Psp6I CCWGG 1 cut(s) 418
PspEI GGTNACC 1 cut(s) 41
PspGI CCWGG 1 cut(s) 418
PspN4I GGNNCC 5 cut(s) 19, 234, 417, 489, 584
PspPI GGNCC 5 cut(s) 18, 101, 338, 415, 524
PspPPI RGGWCCY 1 cut(s) 415
PstI CTGCAG 1 cut(s) 169
PsuI RGATCY 2 cut(s) 159, 189
RsaI GTAC 3 cut(s) 30, 480, 489
RsaNI GTAC 3 cut(s) 29, 479, 488
Sau3AI GATC 5 cut(s) 159, 189, 320, 346, 540
Sau96I GGNCC 5 cut(s) 18, 101, 338, 415, 524
SchI GAGTC 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 420
SfaNI GCATC 3 cut(s) 263, 292, 478
SfcI CTRYAG 1 cut(s) 165
SinI GGWCC 4 cut(s) 18, 101, 338, 415
Sse9I AATT 1 cut(s) 261
SsiI CCGC 2 cut(s) 311, 332
SspMI CTAG 3 cut(s) 84, 279, 306
StyD4I CCNGG 1 cut(s) 418
StyI CCWWGG 2 cut(s) 35, 278
TaaI ACNGT 5 cut(s) 22, 47, 105, 220, 342
TaiI ACGT 1 cut(s) 121
TaqI TCGA 1 cut(s) 428
TasI AATT 1 cut(s) 261
TfiI GAWTC 1 cut(s) 447
TscAI CASTG 1 cut(s) 174
TseFI GTSAC 1 cut(s) 41
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 1 cut(s) 107
TspGWI ACGGA 1 cut(s) 245
TspRI CASTG 1 cut(s) 174
VpaK11BI GGWCC 4 cut(s) 18, 101, 338, 415
XcmI CCANNNNNNNNNTGG 1 cut(s) 570
XmaJI CCTAGG 1 cut(s) 278
XspI CTAG 3 cut(s) 84, 279, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.