Rmu_sc0006695.1_g000040

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006695.1
N/A
Physical Location & Seq
Reverse (-)
194925 .. 196553
1629 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 813 bp
atgcgttttggtaaaaagcactgtcatccttcgtataagagtgttgaagatgtgaatagaccgtgttggaagaagaaatcagtcttcttcgaattggagtactggaagtttttaccgattcgccacaatctggatgtcatgcacatcgagaagaaggactggtctgaagcccgatacttcgagaaaaaagcagaagttaccgttggcaagctagaatttgatgttagaagagaagagaacagtttgcacttcttttttcgaagcagtggagttttggcggatcgtgatctagatgaagctgttgttggagaaagtgccacctttttagatggcaatacatgtagacctttatcaggtgccacaatcatcaagcccgataagaagcagttccaactagtgcatctatgtgtattgcagaatacagatgaagcaaggccctattttgatgaacacttggaaatcttgaagcgtgttgcaactgaacttcttgatgacgataacaatgtatcagaaaagttacgatggatcgctgatggtcctaatccagaagtaccctcattctgtggttacatgatcaatggggttaacttcagcaccaaggatcatgatgatgtccgacaagttcaatgcagtggtgtttcgttatttgccaatgcaatactagtgtctagtgcgaaggataaaaaccctgtgaatgatgataccactttctatggagtcattagggatatctgggagttagatgtcggggacatcattgagtatgaaagtgtgtacaaatttgtgtatgatgtctcctactcccaagattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

270

Amino Acids

31.3

Weight (kDa)

5.19

Isoelectric Point (pI)

40.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 356
AccB7I CCANNNNNTGG 1 cut(s) 130
AccI GTMKAC 1 cut(s) 343
AciI CCGC 1 cut(s) 278
AclWI GGATC 3 cut(s) 288, 533, 609
AcsI RAATTY 2 cut(s) 215, 779
AcuI CTGAAG 2 cut(s) 186, 574
AfaI GTAC 3 cut(s) 101, 552, 776
AfiI CCNNNNNNNGG 2 cut(s) 130, 353
AflIII ACRYGT 1 cut(s) 338
AgsI TTSAA 3 cut(s) 47, 466, 626
AhlI ACTAGT 2 cut(s) 394, 661
AjuI GAANNNNNNNTTGG 4 cut(s) 186, 218, 288, 320
AluBI AGCT 2 cut(s) 211, 299
AluI AGCT 2 cut(s) 211, 299
Alw26I GTCTC 1 cut(s) 799
AlwI GGATC 3 cut(s) 288, 533, 609
AoxI GGCC 1 cut(s) 434
ApoI RAATTY 2 cut(s) 215, 779
Asp700I GAANNNNTTC 1 cut(s) 386
AspS9I GGNCC 2 cut(s) 435, 536
AsuII TTCGAA 2 cut(s) 90, 259
AvaII GGWCC 1 cut(s) 536
BanI GGYRCC 1 cut(s) 356
BbsI GAAGAC 1 cut(s) 76
BccI CCATC 3 cut(s) 323, 516, 527
BclI TGATCA 1 cut(s) 573
BcoDI GTCTC 1 cut(s) 799
BcuI ACTAGT 2 cut(s) 394, 661
BfaI CTAG 5 cut(s) 212, 290, 395, 662, 669
BmcAI AGTACT 1 cut(s) 101
Bme18I GGWCC 1 cut(s) 536
BmgT120I GGNCC 2 cut(s) 435, 536
BmiI GGNNCC 1 cut(s) 358
BmsI GCATC 1 cut(s) 409
BpiI GAAGAC 1 cut(s) 76
Bpu14I TTCGAA 2 cut(s) 90, 259
BsaBI GATNNNNATC 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 597
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 353
Bse1I ACTGG 2 cut(s) 107, 164
Bse8I GATNNNNATC 1 cut(s) 285
BseDI CCNNGG 1 cut(s) 597
BseGI GGATG 2 cut(s) 25, 139
BseJI GATNNNNATC 1 cut(s) 285
BseLI CCNNNNNNNGG 2 cut(s) 130, 353
BseNI ACTGG 2 cut(s) 107, 164
BshFI GGCC 1 cut(s) 436
BshNI GGYRCC 1 cut(s) 356
BslFI GGGAC 1 cut(s) 764
BslI CCNNNNNNNGG 2 cut(s) 130, 353
BsmAI GTCTC 1 cut(s) 799
BsmFI GGGAC 1 cut(s) 764
BsnI GGCC 1 cut(s) 436
Bsp119I TTCGAA 2 cut(s) 90, 259
Bsp1407I TGTACA 1 cut(s) 774
Bsp143I GATC 5 cut(s) 280, 286, 525, 573, 601
BspACI CCGC 1 cut(s) 278
BspANI GGCC 1 cut(s) 436
BspHI TCATGA 1 cut(s) 604
BspLI GGNNCC 1 cut(s) 358
BspPI GGATC 3 cut(s) 288, 533, 609
BspT104I TTCGAA 2 cut(s) 90, 259
BspT107I GGYRCC 1 cut(s) 356
BsrGI TGTACA 1 cut(s) 774
BsrI ACTGG 2 cut(s) 107, 164
BssECI CCNNGG 1 cut(s) 597
BssMI GATC 5 cut(s) 280, 286, 525, 573, 601
BssT1I CCWWGG 1 cut(s) 597
Bst4CI ACNGT 4 cut(s) 23, 63, 202, 242
Bst6I CTCTTC 2 cut(s) 223, 228
BstAUI TGTACA 1 cut(s) 774
BstBI TTCGAA 2 cut(s) 90, 259
BstC8I GCNNGC 1 cut(s) 209
BstENI CCTNNNNNAGG 1 cut(s) 351
BstF5I GGATG 2 cut(s) 25, 139
BstKTI GATC 5 cut(s) 283, 289, 528, 576, 604
BstMAI GTCTC 1 cut(s) 799
BstMBI GATC 5 cut(s) 280, 286, 525, 573, 601
BstNSI RCATGY 1 cut(s) 342
BstV2I GAAGAC 1 cut(s) 76
BsuRI GGCC 1 cut(s) 436
BtsCI GGATG 2 cut(s) 25, 139
BtsI GCAGTG 2 cut(s) 271, 637
BtsIMutI CAGTG 3 cut(s) 19, 271, 637
Cac8I GCNNGC 1 cut(s) 209
CciI TCATGA 1 cut(s) 604
Cfr13I GGNCC 2 cut(s) 435, 536
Csp6I GTAC 3 cut(s) 100, 551, 775
CviAII CATG 4 cut(s) 139, 339, 571, 605
CviJI RGCY 5 cut(s) 170, 211, 299, 373, 436
CviKI_1 RGCY 5 cut(s) 170, 211, 299, 373, 436
CviQI GTAC 3 cut(s) 100, 551, 775
DpnI GATC 5 cut(s) 282, 288, 527, 575, 603
DpnII GATC 5 cut(s) 280, 286, 525, 573, 601
Eam1104I CTCTTC 2 cut(s) 223, 228
EarI CTCTTC 2 cut(s) 223, 228
EciI GGCGGA 1 cut(s) 293
Eco130I CCWWGG 1 cut(s) 597
Eco32I GATATC 1 cut(s) 730
Eco47I GGWCC 1 cut(s) 536
Eco57I CTGAAG 2 cut(s) 186, 574
EcoNI CCTNNNNNAGG 1 cut(s) 351
EcoO109I RGGNCCY 1 cut(s) 435
EcoRV GATATC 1 cut(s) 730
EcoT14I CCWWGG 1 cut(s) 597
ErhI CCWWGG 1 cut(s) 597
FaeI CATG 4 cut(s) 142, 342, 574, 608
FaiI YATR 9 cut(s) 36, 140, 340, 406, 572, 606, 714, 765, 789
FaqI GGGAC 1 cut(s) 764
FatI CATG 4 cut(s) 138, 338, 570, 604
FbaI TGATCA 1 cut(s) 573
FblI GTMKAC 1 cut(s) 343
FokI GGATG 2 cut(s) 12, 146
FspBI CTAG 5 cut(s) 212, 290, 395, 662, 669
HaeIII GGCC 1 cut(s) 436
Hin1II CATG 4 cut(s) 142, 342, 574, 608
HincII GTYRAC 1 cut(s) 586
HindII GTYRAC 1 cut(s) 586
HinfI GANTC 2 cut(s) 118, 717
HpaI GTTAAC 1 cut(s) 586
Hpy166II GTNNAC 3 cut(s) 344, 586, 775
Hpy188I TCNGA 3 cut(s) 166, 511, 617
Hpy188III TCNNGA 9 cut(s) 131, 148, 181, 284, 290, 463, 488, 545, 605
Hpy8I GTNNAC 3 cut(s) 344, 586, 775
HpyAV CCTTC 3 cut(s) 39, 148, 670
HpyCH4III ACNGT 4 cut(s) 23, 63, 202, 242
HpyCH4V TGCA 7 cut(s) 142, 247, 400, 415, 476, 630, 656
Hsp92II CATG 4 cut(s) 142, 342, 574, 608
Ksp22I TGATCA 1 cut(s) 573
KspAI GTTAAC 1 cut(s) 586
Kzo9I GATC 5 cut(s) 280, 286, 525, 573, 601
LpnPI CCDG 7 cut(s) 88, 116, 145, 339, 558, 702, 718
LweI GCATC 1 cut(s) 409
MaeI CTAG 5 cut(s) 212, 290, 395, 662, 669
MaeIII GTNAC 3 cut(s) 196, 516, 566
MalI GATC 5 cut(s) 282, 288, 527, 575, 603
MboI GATC 5 cut(s) 280, 286, 525, 573, 601
MboII GAAGA 8 cut(s) 59, 76, 79, 82, 85, 163, 240, 245
MluCI AATT 3 cut(s) 92, 215, 779
MlyI GAGTC 1 cut(s) 726
MmeI TCCRAC 4 cut(s) 47, 286, 415, 640
MnlI CCTC 1 cut(s) 565
MroXI GAANNNNTTC 1 cut(s) 386
MseI TTAA 1 cut(s) 585
MslI CAYNNNNRTG 2 cut(s) 405, 609
NdeII GATC 5 cut(s) 280, 286, 525, 573, 601
NlaIII CATG 4 cut(s) 142, 342, 574, 608
NlaIV GGNNCC 1 cut(s) 358
NspI RCATGY 1 cut(s) 342
NspV TTCGAA 2 cut(s) 90, 259
PagI TCATGA 1 cut(s) 604
PciI ACATGT 1 cut(s) 338
PdmI GAANNNNTTC 1 cut(s) 386
PfeI GAWTC 1 cut(s) 118
PflMI CCANNNNNTGG 1 cut(s) 130
PleI GAGTC 1 cut(s) 725
PpsI GAGTC 1 cut(s) 725
PscI ACATGT 1 cut(s) 338
PspN4I GGNNCC 1 cut(s) 358
PspPI GGNCC 2 cut(s) 435, 536
RsaI GTAC 3 cut(s) 101, 552, 776
RsaNI GTAC 3 cut(s) 100, 551, 775
RseI CAYNNNNRTG 2 cut(s) 405, 609
SaqAI TTAA 1 cut(s) 585
Sau3AI GATC 5 cut(s) 280, 286, 525, 573, 601
Sau96I GGNCC 2 cut(s) 435, 536
ScaI AGTACT 1 cut(s) 101
SchI GAGTC 1 cut(s) 726
SetI ASST 5 cut(s) 213, 301, 323, 349, 358
SfaNI GCATC 1 cut(s) 409
SfuI TTCGAA 2 cut(s) 90, 259
SinI GGWCC 1 cut(s) 536
SmiMI CAYNNNNRTG 2 cut(s) 405, 609
SpeI ACTAGT 2 cut(s) 394, 661
Sse9I AATT 3 cut(s) 92, 215, 779
SsiI CCGC 1 cut(s) 278
SspMI CTAG 5 cut(s) 212, 290, 395, 662, 669
StyI CCWWGG 1 cut(s) 597
TaaI ACNGT 4 cut(s) 23, 63, 202, 242
TaqI TCGA 4 cut(s) 90, 147, 180, 259
TasI AATT 3 cut(s) 92, 215, 779
TatI WGTACW 2 cut(s) 99, 774
TfiI GAWTC 1 cut(s) 118
Tru1I TTAA 1 cut(s) 585
Tru9I TTAA 1 cut(s) 585
TscAI CASTG 3 cut(s) 26, 271, 637
TspDTI ATGAA 4 cut(s) 309, 441, 462, 780
TspRI CASTG 3 cut(s) 26, 271, 637
Van91I CCANNNNNTGG 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 536
XagI CCTNNNNNAGG 1 cut(s) 351
XapI RAATTY 2 cut(s) 215, 779
XbaI TCTAGA 1 cut(s) 289
XceI RCATGY 1 cut(s) 342
XmiI GTMKAC 1 cut(s) 343
XmnI GAANNNNTTC 1 cut(s) 386
XspI CTAG 5 cut(s) 212, 290, 395, 662, 669
ZrmI AGTACT 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.