Rmu_sc0006709.1_g000013

Nucleolar protein 56-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006709.1
N/A
Physical Location & Seq
Reverse (-)
55522 .. 56351
830 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 540 bp
atggctcgttatcttgcaaacaagtgttctattgcttctcgcattgactgctttgcagataatagcactactgcttttggggagaaactccgcgaacaagttgaggagcgtcttgacttttatgacaagggtgttgcacctcgtaaaaacattgatgtgatgaaatctgcgatggagagtactcaaagcaaagatacagatatggaaacagaagaagtgactattgaagcttcagataagaaaagcaagaagaaatcaaagagtgcagctacagagaatggtgatgtggatgaaccagctacaaatggagatgctactgagggtaaatctgaaaagaagaagaagaagaaggacaagaggaaattggataaggaagatgaagagatggaggatgcaaacaatggacatgctgaggaggatggaacaagcaagaagaagaagaagaagaaaagtaaacatggagaggctgatggagccgatttggccagtgatgttaagaagaagaaaaagaagaaatctaaaagtgaagactccgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

179

Amino Acids

19.93

Weight (kDa)

8.28

Isoelectric Point (pI)

34.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nop PF01798 1 - 39 5.1e-09 snoRNA binding domain, fibrillarin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 93
AciI CCGC 1 cut(s) 91
AcoI YGGCCR 1 cut(s) 483
AcuI CTGAAG 1 cut(s) 216
AfaI GTAC 1 cut(s) 181
AgsI TTSAA 1 cut(s) 227
AluBI AGCT 3 cut(s) 230, 269, 299
AluI AGCT 3 cut(s) 230, 269, 299
AoxI GGCC 1 cut(s) 483
ApeKI GCWGC 1 cut(s) 266
AsuHPI GGTGA 1 cut(s) 293
BalI TGGCCA 1 cut(s) 485
BbsI GAAGAC 1 cut(s) 534
BbvCI CCTCAGC 1 cut(s) 411
BbvI GCAGC 1 cut(s) 278
BccI CCATC 4 cut(s) 166, 379, 413, 464
BfmI CTRYAG 1 cut(s) 270
BglI GCCNNNNNGGC 1 cut(s) 482
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
BmcAI AGTACT 1 cut(s) 181
BmiI GGNNCC 1 cut(s) 475
BmsI GCATC 2 cut(s) 301, 382
BpiI GAAGAC 1 cut(s) 534
Bpu10I CCTNAGC 1 cut(s) 411
Bse1I ACTGG 1 cut(s) 486
BseGI GGATG 3 cut(s) 295, 397, 424
BseMII CTCAG 2 cut(s) 309, 402
BseNI ACTGG 1 cut(s) 486
BseRI GAGGAG 2 cut(s) 119, 428
BseXI GCAGC 1 cut(s) 278
BsgI GTGCAG 1 cut(s) 285
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 1 cut(s) 485
BsnI GGCC 1 cut(s) 485
BspACI CCGC 1 cut(s) 91
BspANI GGCC 1 cut(s) 485
BspCNI CTCAG 2 cut(s) 310, 403
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 475
BsrI ACTGG 1 cut(s) 486
Bst6I CTCTTC 1 cut(s) 375
BstAPI GCANNNNNTGC 1 cut(s) 48
BstDEI CTNAG 2 cut(s) 318, 411
BstF5I GGATG 3 cut(s) 295, 397, 424
BstFNI CGCG 1 cut(s) 93
BstMWI GCNNNNNNNGC 3 cut(s) 48, 473, 482
BstNSI RCATGY 1 cut(s) 410
BstSFI CTRYAG 1 cut(s) 270
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 278
BstV2I GAAGAC 1 cut(s) 534
BsuRI GGCC 1 cut(s) 485
BtgZI GCGATG 1 cut(s) 185
BtsCI GGATG 3 cut(s) 295, 397, 424
BtsIMutI CAGTG 1 cut(s) 493
CseI GACGC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 180
CviAII CATG 2 cut(s) 407, 458
CviJI RGCY 7 cut(s) 5, 230, 269, 299, 467, 476, 485
CviKI_1 RGCY 7 cut(s) 5, 230, 269, 299, 467, 476, 485
CviQI GTAC 1 cut(s) 180
DdeI CTNAG 2 cut(s) 318, 411
EaeI YGGCCR 1 cut(s) 483
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
Eco57I CTGAAG 1 cut(s) 216
FaeI CATG 2 cut(s) 410, 461
FaiI YATR 4 cut(s) 123, 203, 408, 459
FatI CATG 2 cut(s) 406, 457
Fnu4HI GCNGC 1 cut(s) 267
FokI GGATG 3 cut(s) 302, 404, 431
Fsp4HI GCNGC 1 cut(s) 267
GluI GCNGC 1 cut(s) 267
HaeIII GGCC 1 cut(s) 485
HgaI GACGC 1 cut(s) 98
Hin1II CATG 2 cut(s) 410, 461
HindIII AAGCTT 1 cut(s) 228
HinfI GANTC 1 cut(s) 530
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 1 cut(s) 455
Hpy188I TCNGA 3 cut(s) 235, 331, 535
Hpy188III TCNNGA 1 cut(s) 113
Hpy8I GTNNAC 1 cut(s) 455
HpyAV CCTTC 1 cut(s) 343
HpyCH4V TGCA 5 cut(s) 17, 56, 137, 266, 395
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 473, 482
HpyF3I CTNAG 2 cut(s) 318, 411
Hsp92II CATG 2 cut(s) 410, 461
LmnI GCTCC 2 cut(s) 106, 473
LpnPI CCDG 2 cut(s) 309, 499
Lsp1109I GCAGC 1 cut(s) 278
LweI GCATC 2 cut(s) 301, 382
MaeIII GTNAC 1 cut(s) 217
MlsI TGGCCA 1 cut(s) 485
MluCI AATT 1 cut(s) 362
MluNI TGGCCA 1 cut(s) 485
MlyI GAGTC 1 cut(s) 524
MnlI CCTC 8 cut(s) 97, 150, 313, 351, 382, 406, 409, 457
Mox20I TGGCCA 1 cut(s) 485
MscI TGGCCA 1 cut(s) 485
MseI TTAA 1 cut(s) 495
MslI CAYNNNNRTG 1 cut(s) 155
Msp20I TGGCCA 1 cut(s) 485
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 3 cut(s) 48, 473, 482
NlaIII CATG 2 cut(s) 410, 461
NlaIV GGNNCC 1 cut(s) 475
NmuCI GTSAC 1 cut(s) 217
NspI RCATGY 1 cut(s) 410
PkrI GCNGC 1 cut(s) 268
PleI GAGTC 1 cut(s) 524
PpsI GAGTC 1 cut(s) 524
PspN4I GGNNCC 1 cut(s) 475
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
RseI CAYNNNNRTG 1 cut(s) 155
SaqAI TTAA 1 cut(s) 495
SatI GCNGC 1 cut(s) 267
ScaI AGTACT 1 cut(s) 181
SchI GAGTC 1 cut(s) 524
SetI ASST 4 cut(s) 142, 232, 271, 301
SfaNI GCATC 2 cut(s) 301, 382
SfcI CTRYAG 1 cut(s) 270
SmiMI CAYNNNNRTG 1 cut(s) 155
Sse9I AATT 1 cut(s) 362
SsiI CCGC 1 cut(s) 91
TasI AATT 1 cut(s) 362
TatI WGTACW 1 cut(s) 179
Tru1I TTAA 1 cut(s) 495
Tru9I TTAA 1 cut(s) 495
TscAI CASTG 1 cut(s) 493
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 1 cut(s) 266
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 3 cut(s) 176, 306, 393
TspRI CASTG 1 cut(s) 493
XceI RCATGY 1 cut(s) 410
ZrmI AGTACT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.