Rmu_sc0006711.1_g000025

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006711.1
N/A
Physical Location & Seq
Reverse (-)
71568 .. 75907
4340 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 738 bp
atgaggaggaagatgaagaggcctggatatgttcccactacatcagaggttttgctagacattgatgaagaagataaagaagaagctttaaatgggcatattgaaaagttggccgctgctttcaccctcctgaacacaccatcgggaactcctactcgcatagtaaagaatctgcggagacattttaaccaaatgagctcacaagcagcggaagccatagctctaaattcagcctctgcactagagcgagcaacaactgtctgcttcttgattttccagccttcaaatcccagaaacctccgccgcccaccttcaagatctcaactccaggagtccagaaccggcggccccacccccagaaccggccgacaaaccaccgaaccggccaccggaagtatcaaaagtccctctgcccggcccagcaaagcccacctgcaagccaagccgccaagttacctgccacgtcagcgtccagcaggcgcccagtcagccctgccacgtcagcggccggtcaacacttttcaggcgacttttcctgcgaacttcaggccacttttccggatgagttacctgaacaagttgaactttgttccgctcgagacaactggcgcaggataccataggtgggtccgagatgtgcgccaacatcttaaggctgatggaattctggaaaccatccaagagcctagtcagaacgtgctctccattgagcaagttactgcttttgaagcaaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

245

Amino Acids

27.35

Weight (kDa)

10.62

Isoelectric Point (pI)

70.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DYW_deaminase PF14432 9 - 59 2.8e-12 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 441
Acc36I ACCTGC 2 cut(s) 441, 465
AccB1I GGYRCC 1 cut(s) 479
AccBSI CCGCTC 1 cut(s) 595
AccIII TCCGGA 1 cut(s) 558
AciI CCGC 9 cut(s) 114, 175, 209, 301, 304, 345, 446, 505, 593
AcoI YGGCCR 4 cut(s) 111, 364, 384, 506
AcsI RAATTY 2 cut(s) 226, 663
AcuI CTGAAG 1 cut(s) 529
AcyI GRCGYC 1 cut(s) 480
AfiI CCNNNNNNNGG 4 cut(s) 362, 389, 414, 625
AflII CTTAAG 1 cut(s) 650
AgsI TTSAA 5 cut(s) 104, 285, 315, 583, 728
AjiI CACGTC 2 cut(s) 464, 500
AjnI CCWGG 2 cut(s) 22, 327
AloI GAACNNNNNNTCC 2 cut(s) 686, 718
AluBI AGCT 3 cut(s) 86, 198, 221
AluI AGCT 3 cut(s) 86, 198, 221
Alw21I GWGCWC 2 cut(s) 200, 702
Alw26I GTCTC 2 cut(s) 172, 593
AlwNI CAGNNNCTG 1 cut(s) 236
Ama87I CYCGRG 1 cut(s) 596
Aor13HI TCCGGA 1 cut(s) 558
AoxI GGCC 8 cut(s) 20, 111, 346, 364, 384, 416, 506, 548
ApeKI GCWGC 2 cut(s) 116, 206
ApoI RAATTY 2 cut(s) 226, 663
AspLEI GCGC 3 cut(s) 482, 611, 642
AspS9I GGNCC 3 cut(s) 347, 417, 628
AsuC2I CCSGG 1 cut(s) 415
AsuHPI GGTGA 1 cut(s) 115
AvaI CYCGRG 1 cut(s) 596
AvaII GGWCC 1 cut(s) 628
BanI GGYRCC 1 cut(s) 479
BanII GRGCYC 1 cut(s) 200
Bbv12I GWGCWC 2 cut(s) 200, 702
BbvI GCAGC 2 cut(s) 103, 218
BccI CCATC 3 cut(s) 148, 653, 683
BciT130I CCWGG 2 cut(s) 24, 329
BciVI GTATCC 1 cut(s) 608
BcnI CCSGG 1 cut(s) 415
BcoDI GTCTC 2 cut(s) 172, 593
BfaI CTAG 3 cut(s) 56, 242, 687
BfoI RGCGCY 1 cut(s) 483
BfrI CTTAAG 1 cut(s) 650
BfuAI ACCTGC 2 cut(s) 441, 465
BfuI GTATCC 1 cut(s) 608
BglII AGATCT 1 cut(s) 317
BisI GCNGC 7 cut(s) 114, 117, 207, 304, 346, 446, 506
BlsI GCNGC 7 cut(s) 115, 118, 208, 305, 347, 447, 507
Bme1390I CCNGG 3 cut(s) 24, 329, 415
Bme18I GGWCC 1 cut(s) 628
BmeT110I CYCGRG 1 cut(s) 596
BmgBI CACGTC 2 cut(s) 464, 500
BmgT120I GGNCC 3 cut(s) 347, 417, 628
BmiI GGNNCC 3 cut(s) 349, 481, 629
BmrFI CCNGG 3 cut(s) 24, 329, 415
BmrI ACTGGG 1 cut(s) 478
BmuI ACTGGG 1 cut(s) 478
BpmI CTGGAG 1 cut(s) 311
BpuMI CCSGG 1 cut(s) 415
BsaHI GRCGYC 1 cut(s) 480
BsaWI WCCGGW 2 cut(s) 389, 558
BsaXI ACNNNNNCTCC 2 cut(s) 686, 716
Bsc4I CCNNNNNNNGG 4 cut(s) 362, 389, 414, 625
Bse118I RCCGGY 4 cut(s) 341, 362, 382, 508
Bse1I ACTGG 2 cut(s) 484, 610
BseAI TCCGGA 1 cut(s) 558
BseBI CCWGG 2 cut(s) 24, 329
BseGI GGATG 2 cut(s) 567, 675
BseLI CCNNNNNNNGG 4 cut(s) 362, 389, 414, 625
BseNI ACTGG 2 cut(s) 484, 610
BseRI GAGGAG 1 cut(s) 19
BseX3I CGGCCG 2 cut(s) 364, 506
BseXI GCAGC 2 cut(s) 103, 218
BseYI CCCAGC 1 cut(s) 419
BsgI GTGCAG 1 cut(s) 222
Bsh1285I CGRYCG 2 cut(s) 367, 509
BshFI GGCC 8 cut(s) 22, 113, 348, 366, 386, 418, 508, 550
BshNI GGYRCC 1 cut(s) 479
BsiEI CGRYCG 2 cut(s) 367, 509
BsiHKAI GWGCWC 2 cut(s) 200, 702
BsiHKCI CYCGRG 1 cut(s) 596
BsiSI CCGG 7 cut(s) 342, 363, 383, 390, 415, 509, 559
BslFI GGGAC 1 cut(s) 390
BslI CCNNNNNNNGG 4 cut(s) 362, 389, 414, 625
BsmAI GTCTC 2 cut(s) 172, 593
BsmFI GGGAC 1 cut(s) 390
BsnI GGCC 8 cut(s) 22, 113, 348, 366, 386, 418, 508, 550
BsoBI CYCGRG 1 cut(s) 596
Bsp1286I GDGCHC 2 cut(s) 200, 702
Bsp13I TCCGGA 1 cut(s) 558
Bsp143I GATC 1 cut(s) 317
BspACI CCGC 9 cut(s) 114, 175, 209, 301, 304, 345, 446, 505, 593
BspANI GGCC 8 cut(s) 22, 113, 348, 366, 386, 418, 508, 550
BspEI TCCGGA 1 cut(s) 558
BspLI GGNNCC 3 cut(s) 349, 481, 629
BspMI ACCTGC 2 cut(s) 441, 465
BspT107I GGYRCC 1 cut(s) 479
BspTI CTTAAG 1 cut(s) 650
BsrBI CCGCTC 1 cut(s) 595
BsrFI RCCGGY 4 cut(s) 341, 362, 382, 508
BsrI ACTGG 2 cut(s) 484, 610
BssAI RCCGGY 4 cut(s) 341, 362, 382, 508
BssMI GATC 1 cut(s) 317
BssNI GRCGYC 1 cut(s) 480
Bst2UI CCWGG 2 cut(s) 24, 329
Bst4CI ACNGT 1 cut(s) 259
Bst6I CTCTTC 1 cut(s) 11
BstACI GRCGYC 1 cut(s) 480
BstAFI CTTAAG 1 cut(s) 650
BstC8I GCNNGC 3 cut(s) 249, 438, 478
BstF5I GGATG 2 cut(s) 567, 675
BstH2I RGCGCY 1 cut(s) 483
BstHHI GCGC 3 cut(s) 482, 611, 642
BstKTI GATC 1 cut(s) 320
BstMAI GTCTC 2 cut(s) 172, 593
BstMBI GATC 1 cut(s) 317
BstMCI CGRYCG 2 cut(s) 367, 509
BstMWI GCNNNNNNNGC 6 cut(s) 212, 442, 466, 488, 502, 728
BstNI CCWGG 2 cut(s) 24, 329
BstSCI CCNGG 3 cut(s) 22, 327, 413
BstV1I GCAGC 2 cut(s) 103, 218
BstX2I RGATCY 1 cut(s) 317
BstYI RGATCY 1 cut(s) 317
BstZI CGGCCG 2 cut(s) 364, 506
BsuI GTATCC 1 cut(s) 608
BsuRI GGCC 8 cut(s) 22, 113, 348, 366, 386, 418, 508, 550
BtrI CACGTC 2 cut(s) 464, 500
BtsCI GGATG 2 cut(s) 567, 675
BveI ACCTGC 2 cut(s) 441, 465
Cac8I GCNNGC 3 cut(s) 249, 438, 478
CaiI CAGNNNCTG 1 cut(s) 236
CfoI GCGC 3 cut(s) 482, 611, 642
Cfr10I RCCGGY 4 cut(s) 341, 362, 382, 508
Cfr13I GGNCC 3 cut(s) 347, 417, 628
CseI GACGC 1 cut(s) 458
DinI GGCGCC 1 cut(s) 481
DpnI GATC 1 cut(s) 319
DpnII GATC 1 cut(s) 317
DraI TTTAAA 1 cut(s) 90
EaeI YGGCCR 4 cut(s) 111, 364, 384, 506
EagI CGGCCG 2 cut(s) 364, 506
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
EciI GGCGGA 1 cut(s) 290
Ecl136II GAGCTC 1 cut(s) 198
EclXI CGGCCG 2 cut(s) 364, 506
Eco147I AGGCCT 1 cut(s) 22
Eco24I GRGCYC 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 628
Eco52I CGGCCG 2 cut(s) 364, 506
Eco53kI GAGCTC 1 cut(s) 198
Eco57I CTGAAG 1 cut(s) 529
Eco88I CYCGRG 1 cut(s) 596
EcoICRI GAGCTC 1 cut(s) 198
EcoRI GAATTC 1 cut(s) 663
EcoRII CCWGG 2 cut(s) 22, 327
EcoT38I GRGCYC 1 cut(s) 200
EgeI GGCGCC 1 cut(s) 481
EheI GGCGCC 1 cut(s) 481
FaiI YATR 5 cut(s) 30, 99, 161, 218, 621
FalI AAGNNNNNCTT 2 cut(s) 569, 601
FaqI GGGAC 1 cut(s) 390
Fnu4HI GCNGC 7 cut(s) 114, 117, 207, 304, 346, 446, 506
FokI GGATG 2 cut(s) 574, 662
FriOI GRGCYC 1 cut(s) 200
Fsp4HI GCNGC 7 cut(s) 114, 117, 207, 304, 346, 446, 506
FspBI CTAG 3 cut(s) 56, 242, 687
GlaI GCGC 3 cut(s) 481, 610, 641
GluI GCNGC 7 cut(s) 114, 117, 207, 304, 346, 446, 506
GsaI CCCAGC 1 cut(s) 423
GsuI CTGGAG 1 cut(s) 311
HaeII RGCGCY 1 cut(s) 483
HaeIII GGCC 8 cut(s) 22, 113, 348, 366, 386, 418, 508, 550
HapII CCGG 7 cut(s) 342, 363, 383, 390, 415, 509, 559
HgaI GACGC 1 cut(s) 458
HhaI GCGC 3 cut(s) 482, 611, 642
Hin1I GRCGYC 1 cut(s) 480
Hin6I GCGC 3 cut(s) 480, 609, 640
HinP1I GCGC 3 cut(s) 480, 609, 640
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HindIII AAGCTT 1 cut(s) 84
HinfI GANTC 2 cut(s) 169, 332
HpaII CCGG 7 cut(s) 342, 363, 383, 390, 415, 509, 559
HphI GGTGA 1 cut(s) 115
Hpy166II GTNNAC 1 cut(s) 514
Hpy188I TCNGA 3 cut(s) 46, 632, 693
Hpy188III TCNNGA 8 cut(s) 130, 144, 268, 315, 336, 559, 598, 668
Hpy8I GTNNAC 1 cut(s) 514
HpyAV CCTTC 2 cut(s) 291, 321
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4IV ACGT 3 cut(s) 463, 499, 696
HpyCH4V TGCA 2 cut(s) 239, 436
HpyF10VI GCNNNNNNNGC 6 cut(s) 212, 442, 466, 488, 502, 728
HpySE526I ACGT 3 cut(s) 463, 499, 696
Hsp92I GRCGYC 1 cut(s) 480
HspAI GCGC 3 cut(s) 480, 609, 640
KasI GGCGCC 1 cut(s) 479
Kpn2I TCCGGA 1 cut(s) 558
Kzo9I GATC 1 cut(s) 317
Lsp1109I GCAGC 2 cut(s) 103, 218
MaeI CTAG 3 cut(s) 56, 242, 687
MaeII ACGT 3 cut(s) 463, 499, 696
MaeIII GTNAC 3 cut(s) 452, 566, 715
MalI GATC 1 cut(s) 319
MbiI CCGCTC 1 cut(s) 595
MboI GATC 1 cut(s) 317
MboII GAAGA 5 cut(s) 22, 28, 80, 83, 92
MflI RGATCY 1 cut(s) 317
MhlI GDGCHC 2 cut(s) 200, 702
MluCI AATT 2 cut(s) 226, 663
Mly113I GGCGCC 1 cut(s) 480
MlyI GAGTC 1 cut(s) 341
MnlI CCTC 6 cut(s) 12, 40, 137, 244, 308, 418
MroI TCCGGA 1 cut(s) 558
MseI TTAA 3 cut(s) 89, 186, 651
MspA1I CMGCKG 3 cut(s) 116, 209, 505
MspCI CTTAAG 1 cut(s) 650
MspI CCGG 7 cut(s) 342, 363, 383, 390, 415, 509, 559
MspR9I CCNGG 3 cut(s) 24, 329, 415
MvaI CCWGG 2 cut(s) 24, 329
MwoI GCNNNNNNNGC 6 cut(s) 212, 442, 466, 488, 502, 728
NarI GGCGCC 1 cut(s) 480
NciI CCSGG 1 cut(s) 415
NdeII GATC 1 cut(s) 317
NlaIV GGNNCC 3 cut(s) 349, 481, 629
PaeR7I CTCGAG 1 cut(s) 596
PaqCI CACCTGC 1 cut(s) 441
PceI AGGCCT 1 cut(s) 22
PfeI GAWTC 1 cut(s) 169
PfoI TCCNGGA 1 cut(s) 327
PkrI GCNGC 7 cut(s) 115, 118, 208, 305, 347, 447, 507
PleI GAGTC 1 cut(s) 340
PluTI GGCGCC 1 cut(s) 483
PpsI GAGTC 1 cut(s) 340
Psp124BI GAGCTC 1 cut(s) 200
Psp6I CCWGG 2 cut(s) 22, 327
PspFI CCCAGC 1 cut(s) 419
PspGI CCWGG 2 cut(s) 22, 327
PspN4I GGNNCC 3 cut(s) 349, 481, 629
PspPI GGNCC 3 cut(s) 347, 417, 628
PstNI CAGNNNCTG 1 cut(s) 236
PsuI RGATCY 1 cut(s) 317
SacI GAGCTC 1 cut(s) 200
SaqAI TTAA 3 cut(s) 89, 186, 651
SatI GCNGC 7 cut(s) 114, 117, 207, 304, 346, 446, 506
Sau3AI GATC 1 cut(s) 317
Sau96I GGNCC 3 cut(s) 347, 417, 628
SchI GAGTC 1 cut(s) 341
ScrFI CCNGG 3 cut(s) 24, 329, 415
SduI GDGCHC 2 cut(s) 200, 702
SfoI GGCGCC 1 cut(s) 481
Sfr274I CTCGAG 1 cut(s) 596
SinI GGWCC 1 cut(s) 628
SlaI CTCGAG 1 cut(s) 596
SmlI CTYRAG 2 cut(s) 596, 650
SmoI CTYRAG 2 cut(s) 596, 650
Sse9I AATT 2 cut(s) 226, 663
SseBI AGGCCT 1 cut(s) 22
SsiI CCGC 9 cut(s) 114, 175, 209, 301, 304, 345, 446, 505, 593
SspDI GGCGCC 1 cut(s) 479
SspMI CTAG 3 cut(s) 56, 242, 687
SstI GAGCTC 1 cut(s) 200
StuI AGGCCT 1 cut(s) 22
StyD4I CCNGG 3 cut(s) 22, 327, 413
TaaI ACNGT 1 cut(s) 259
TaiI ACGT 3 cut(s) 466, 502, 699
TaqI TCGA 1 cut(s) 597
TasI AATT 2 cut(s) 226, 663
TauI GCSGC 5 cut(s) 116, 306, 348, 448, 508
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 3 cut(s) 89, 186, 651
Tru9I TTAA 3 cut(s) 89, 186, 651
TseI GCWGC 2 cut(s) 116, 206
TspDTI ATGAA 2 cut(s) 29, 81
Vha464I CTTAAG 1 cut(s) 650
VpaK11BI GGWCC 1 cut(s) 628
XapI RAATTY 2 cut(s) 226, 663
XhoI CTCGAG 1 cut(s) 596
XspI CTAG 3 cut(s) 56, 242, 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.