Rmu_sc0006734.1_g000003

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006734.1
N/A
Physical Location & Seq
Forward (+)
18697 .. 19014
318 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 318 bp
atgtcaaatgaacctagactcgactttcccatgcttgaatcaacagacttggattaccacagttgggtaaccgatgttgagaactacctcacttcaaagggaatattatccataatccagacacctaactcggatcgtgtgttcatgcgaacacctacaaagcatgctcaagcagttatcttgatgcgatgccatatgtacaagacactcagattggagtatatgtcgatcaaggatgcaaaagagctatgggtagagctagaagagcgctttggcaatgtccaagattccatcctccctgacttgaaggttcaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

105

Amino Acids

12.36

Weight (kDa)

5.27

Isoelectric Point (pI)

40.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 141
AfaI GTAC 1 cut(s) 200
AfeI AGCGCT 1 cut(s) 269
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 4 cut(s) 38, 96, 307, 314
AjuI GAANNNNNNNTTGG 2 cut(s) 255, 287
AloI GAACNNNNNNTCC 2 cut(s) 125, 157
AluBI AGCT 2 cut(s) 247, 259
AluI AGCT 2 cut(s) 247, 259
AlwI GGATC 1 cut(s) 141
Aor51HI AGCGCT 1 cut(s) 269
AspLEI GCGC 1 cut(s) 270
BccI CCATC 1 cut(s) 299
BfaI CTAG 2 cut(s) 15, 260
BfoI RGCGCY 1 cut(s) 271
BmsI GCATC 3 cut(s) 174, 179, 226
BpuEI CTTGAG 1 cut(s) 153
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse3DI GCAATG 1 cut(s) 283
BseGI GGATG 2 cut(s) 241, 291
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMI GCAATG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 223
BslI CCNNNNNNNGG 1 cut(s) 64
Bsp1407I TGTACA 1 cut(s) 198
Bsp143I GATC 2 cut(s) 133, 228
BspCNI CTCAG 1 cut(s) 222
BspPI GGATC 1 cut(s) 141
BspQI GCTCTTC 1 cut(s) 258
BsrDI GCAATG 1 cut(s) 283
BsrGI TGTACA 1 cut(s) 198
BssMI GATC 2 cut(s) 133, 228
Bst4CI ACNGT 1 cut(s) 62
Bst6I CTCTTC 1 cut(s) 258
BstAUI TGTACA 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 209
BstEII GGTNACC 1 cut(s) 67
BstF5I GGATG 2 cut(s) 241, 291
BstH2I RGCGCY 1 cut(s) 271
BstHHI GCGC 1 cut(s) 270
BstKTI GATC 2 cut(s) 136, 231
BstMBI GATC 2 cut(s) 133, 228
BstMWI GCNNNNNNNGC 1 cut(s) 265
BstNSI RCATGY 1 cut(s) 167
BstPI GGTNACC 1 cut(s) 67
BtgZI GCGATG 1 cut(s) 202
BtsCI GGATG 2 cut(s) 241, 291
Cac8I GCNNGC 1 cut(s) 165
CfoI GCGC 1 cut(s) 270
Csp6I GTAC 1 cut(s) 199
CviAII CATG 3 cut(s) 31, 145, 164
CviJI RGCY 2 cut(s) 247, 259
CviKI_1 RGCY 2 cut(s) 247, 259
CviQI GTAC 1 cut(s) 199
DdeI CTNAG 1 cut(s) 209
DpnI GATC 2 cut(s) 135, 230
DpnII GATC 2 cut(s) 133, 228
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Eco47III AGCGCT 1 cut(s) 269
Eco91I GGTNACC 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 67
FaeI CATG 3 cut(s) 34, 148, 167
FaiI YATR 9 cut(s) 32, 113, 146, 165, 195, 197, 222, 224, 250
FatI CATG 3 cut(s) 30, 144, 163
FauNDI CATATG 1 cut(s) 195
FokI GGATG 2 cut(s) 248, 278
FspBI CTAG 2 cut(s) 15, 260
GlaI GCGC 1 cut(s) 269
HaeII RGCGCY 1 cut(s) 271
HhaI GCGC 1 cut(s) 270
Hin1II CATG 3 cut(s) 34, 148, 167
Hin6I GCGC 1 cut(s) 268
HinP1I GCGC 1 cut(s) 268
HinfI GANTC 3 cut(s) 18, 38, 287
Hpy188I TCNGA 2 cut(s) 133, 212
Hpy188III TCNNGA 2 cut(s) 118, 181
HpyAV CCTTC 1 cut(s) 301
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 265
HpyF3I CTNAG 1 cut(s) 209
Hsp92II CATG 3 cut(s) 34, 148, 167
HspAI GCGC 1 cut(s) 268
Kzo9I GATC 2 cut(s) 133, 228
LguI GCTCTTC 1 cut(s) 258
LpnPI CCDG 2 cut(s) 131, 312
LweI GCATC 3 cut(s) 174, 179, 226
MaeI CTAG 2 cut(s) 15, 260
MaeIII GTNAC 1 cut(s) 67
MalI GATC 2 cut(s) 135, 230
MboI GATC 2 cut(s) 133, 228
MboII GAAGA 1 cut(s) 275
MlyI GAGTC 1 cut(s) 12
MnlI CCTC 2 cut(s) 98, 305
MwoI GCNNNNNNNGC 1 cut(s) 265
NdeI CATATG 1 cut(s) 195
NdeII GATC 2 cut(s) 133, 228
NlaIII CATG 3 cut(s) 34, 148, 167
NspI RCATGY 1 cut(s) 167
PaeI GCATGC 1 cut(s) 167
PciSI GCTCTTC 1 cut(s) 258
PfeI GAWTC 2 cut(s) 38, 287
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PspEI GGTNACC 1 cut(s) 67
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
SapI GCTCTTC 1 cut(s) 258
Sau3AI GATC 2 cut(s) 133, 228
SchI GAGTC 1 cut(s) 12
SetI ASST 7 cut(s) 16, 90, 127, 157, 249, 261, 312
SfaNI GCATC 3 cut(s) 174, 179, 226
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
SphI GCATGC 1 cut(s) 167
SspI AATATT 1 cut(s) 105
SspMI CTAG 2 cut(s) 15, 260
TaaI ACNGT 1 cut(s) 62
TaqI TCGA 2 cut(s) 21, 227
TatI WGTACW 1 cut(s) 198
TfiI GAWTC 2 cut(s) 38, 287
TspDTI ATGAA 2 cut(s) 24, 133
XceI RCATGY 1 cut(s) 167
XspI CTAG 2 cut(s) 15, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.