Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006757.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

7410 .. 9635

Gene Structure 2226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

atggtcctcactggttcgttgcagttatcccatggattgggactttgcaagaatcaggggtaccagaaacagtttaagaggggaataggatgggacaaattacatctatcaagcactgcccttacatctcgagtctcgtttcagaaactggattcttggagtattggtttatcagagaatgtatacaggcccatacgtactgtacctcacagatatcatgtgtttaagtgccattcatctgtaacatcaggccaatcttttggccaacatggcttgaagacagctaccatggtgttgaaaaggtcatatgatgttttgcaaggttatcctcttgtattcaaattggttccatcagttgctgtcattatatttgccatatggggtctcgcaccacttatgcgtctgagcagaaacctaatccttagtaagaatgatagcagctggaaaaagagtaacacacactatgttacaaactcatatattcaacctttgctcctatggacgggagcaatgctcatttgcagatcaggaatagggatggcaatggggcgggttgtggatgagaatcacaataccatccccagggtcattttctaccctcatccccgccccaatcttcaatatattttattccccgtccccaaccccattggggactatgcctccaaacccaccccaaatccccaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016043 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

229

Amino Acids

25.76

Weight (kDa)

10.12

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MSL2_3	PF25237	153 - 176	9.4e-06	Mechanosensitive channel protein 2/3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	60
AccB1I	GGYRCC	1 cut(s)	60
AccB7I	CCANNNNNTGG	1 cut(s)	37
AccI	GTMKAC	1 cut(s)	183
AciI	CCGC	2 cut(s)	550, 607
AcoI	YGGCCR	1 cut(s)	262
AfaI	GTAC	3 cut(s)	62, 199, 204
AfiI	CCNNNNNNNGG	4 cut(s)	37, 502, 582, 652
AgsI	TTSAA	5 cut(s)	277, 298, 340, 485, 620
AjnI	CCWGG	1 cut(s)	581
AluBI	AGCT	2 cut(s)	284, 441
AluI	AGCT	2 cut(s)	284, 441
Alw26I	GTCTC	2 cut(s)	139, 389
AlwNI	CAGNNNCTG	2 cut(s)	148, 359
Ama87I	CYCGRG	1 cut(s)	129
AoxI	GGCC	3 cut(s)	188, 250, 262
ApeKI	GCWGC	1 cut(s)	438
Asp718I	GGTACC	1 cut(s)	60
AspS9I	GGNCC	2 cut(s)	4, 189
AvaI	CYCGRG	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	4
BalI	TGGCCA	1 cut(s)	264
BanI	GGYRCC	1 cut(s)	60
BbsI	GAAGAC	1 cut(s)	284
BbvI	GCAGC	1 cut(s)	450
BccI	CCATC	4 cut(s)	84, 358, 532, 584
BciT130I	CCWGG	1 cut(s)	583
BcoDI	GTCTC	2 cut(s)	139, 389
BglI	GCCNNNNNGGC	1 cut(s)	270
BisI	GCNGC	1 cut(s)	439
BlsI	GCNGC	1 cut(s)	440
Bme1390I	CCNGG	1 cut(s)	583
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	129
BmgT120I	GGNCC	2 cut(s)	4, 189
BmiI	GGNNCC	2 cut(s)	62, 348
BmrFI	CCNGG	1 cut(s)	583
BpiI	GAAGAC	1 cut(s)	284
BplI	GAGNNNNNCTC	2 cut(s)	498, 530
BsaAI	YACGTR	1 cut(s)	197
BsaBI	GATNNNNATC	1 cut(s)	564
BsaI	GGTCTC	1 cut(s)	389
BsaJI	CCNNGG	4 cut(s)	31, 288, 581, 582
BsaXI	ACNNNNNCTCC	6 cut(s)	151, 181, 477, 507, 647, 677
Bsc4I	CCNNNNNNNGG	4 cut(s)	37, 502, 582, 652
Bse1I	ACTGG	2 cut(s)	16, 153
Bse3DI	GCAATG	2 cut(s)	516, 549
Bse8I	GATNNNNATC	1 cut(s)	564
BseBI	CCWGG	1 cut(s)	583
BseDI	CCNNGG	4 cut(s)	31, 288, 581, 582
BseGI	GGATG	5 cut(s)	95, 543, 565, 576, 601
BseJI	GATNNNNATC	1 cut(s)	564
BseLI	CCNNNNNNNGG	4 cut(s)	37, 502, 582, 652
BseMI	GCAATG	2 cut(s)	516, 549
BseMII	CTCAG	1 cut(s)	395
BseNI	ACTGG	2 cut(s)	16, 153
BseXI	GCAGC	1 cut(s)	450
BshFI	GGCC	3 cut(s)	190, 252, 264
BshNI	GGYRCC	1 cut(s)	60
BsiHKCI	CYCGRG	1 cut(s)	129
BslFI	GGGAC	4 cut(s)	54, 107, 623, 668
BslI	CCNNNNNNNGG	4 cut(s)	37, 502, 582, 652
BsmAI	GTCTC	2 cut(s)	139, 389
BsmFI	GGGAC	4 cut(s)	54, 107, 623, 668
BsnI	GGCC	3 cut(s)	190, 252, 264
Bso31I	GGTCTC	1 cut(s)	389
BsoBI	CYCGRG	1 cut(s)	129
Bsp143I	GATC	1 cut(s)	524
Bsp19I	CCATGG	2 cut(s)	31, 288
BspACI	CCGC	2 cut(s)	550, 607
BspANI	GGCC	3 cut(s)	190, 252, 264
BspCNI	CTCAG	1 cut(s)	396
BspLI	GGNNCC	2 cut(s)	62, 348
BspT107I	GGYRCC	1 cut(s)	60
BspTNI	GGTCTC	1 cut(s)	389
BsrDI	GCAATG	2 cut(s)	516, 549
BsrI	ACTGG	2 cut(s)	16, 153
BssECI	CCNNGG	4 cut(s)	31, 288, 581, 582
BssMI	GATC	1 cut(s)	524
BssNAI	GTATAC	1 cut(s)	184
BssT1I	CCWWGG	2 cut(s)	31, 288
Bst1107I	GTATAC	1 cut(s)	184
Bst2UI	CCWGG	1 cut(s)	583
Bst4CI	ACNGT	2 cut(s)	72, 202
BstBAI	YACGTR	1 cut(s)	197
BstDEI	CTNAG	2 cut(s)	404, 422
BstDSI	CCRYGG	2 cut(s)	31, 288
BstF5I	GGATG	5 cut(s)	95, 543, 565, 576, 601
BstKTI	GATC	1 cut(s)	527
BstMAI	GTCTC	2 cut(s)	139, 389
BstMBI	GATC	1 cut(s)	524
BstMWI	GCNNNNNNNGC	1 cut(s)	270
BstNI	CCWGG	1 cut(s)	583
BstSCI	CCNGG	1 cut(s)	581
BstSNI	TACGTA	1 cut(s)	197
BstV1I	GCAGC	1 cut(s)	450
BstV2I	GAAGAC	1 cut(s)	284
BstXI	CCANNNNNNTGG	1 cut(s)	260
BstZ17I	GTATAC	1 cut(s)	184
BsuRI	GGCC	3 cut(s)	190, 252, 264
BtgI	CCRYGG	2 cut(s)	31, 288
BtsCI	GGATG	5 cut(s)	95, 543, 565, 576, 601
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	2 cut(s)	9, 114
CaiI	CAGNNNCTG	2 cut(s)	148, 359
Cfr13I	GGNCC	2 cut(s)	4, 189
CseI	GACGC	1 cut(s)	389
Csp6I	GTAC	3 cut(s)	61, 198, 203
CviAII	CATG	4 cut(s)	32, 218, 269, 289
CviJI	RGCY	6 cut(s)	190, 252, 264, 273, 284, 441
CviKI_1	RGCY	6 cut(s)	190, 252, 264, 273, 284, 441
CviQI	GTAC	3 cut(s)	61, 198, 203
DdeI	CTNAG	2 cut(s)	404, 422
DpnI	GATC	1 cut(s)	526
DpnII	GATC	1 cut(s)	524
EaeI	YGGCCR	1 cut(s)	262
Eco105I	TACGTA	1 cut(s)	197
Eco130I	CCWWGG	2 cut(s)	31, 288
Eco31I	GGTCTC	1 cut(s)	389
Eco32I	GATATC	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	4
Eco88I	CYCGRG	1 cut(s)	129
EcoRII	CCWGG	1 cut(s)	581
EcoRV	GATATC	1 cut(s)	215
EcoT14I	CCWWGG	2 cut(s)	31, 288
ErhI	CCWWGG	2 cut(s)	31, 288
FaeI	CATG	4 cut(s)	35, 221, 272, 292
FaqI	GGGAC	4 cut(s)	54, 107, 623, 668
FatI	CATG	4 cut(s)	31, 217, 268, 288
FauI	CCCGC	2 cut(s)	543, 614
FauNDI	CATATG	2 cut(s)	307, 377
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	439
FokI	GGATG	5 cut(s)	102, 550, 563, 572, 588
Fsp4HI	GCNGC	1 cut(s)	439
GluI	GCNGC	1 cut(s)	439
HaeIII	GGCC	3 cut(s)	190, 252, 264
HgaI	GACGC	1 cut(s)	389
Hin1II	CATG	4 cut(s)	35, 221, 272, 292
HinfI	GANTC	4 cut(s)	52, 132, 152, 565
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	3 cut(s)	144, 175, 405
Hpy188III	TCNNGA	2 cut(s)	129, 528
Hpy8I	GTNNAC	1 cut(s)	184
HpyCH4III	ACNGT	2 cut(s)	72, 202
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	4 cut(s)	22, 48, 319, 522
HpyF10VI	GCNNNNNNNGC	1 cut(s)	270
HpyF3I	CTNAG	2 cut(s)	404, 422
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	4 cut(s)	35, 221, 272, 292
KpnI	GGTACC	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	524
LmnI	GCTCC	2 cut(s)	498, 506
LpnPI	CCDG	9 cut(s)	41, 77, 134, 172, 234, 427, 513, 568, 595
Lsp1109I	GCAGC	1 cut(s)	450
MaeII	ACGT	1 cut(s)	196
MaeIII	GTNAC	3 cut(s)	241, 452, 466
MalI	GATC	1 cut(s)	526
MboI	GATC	1 cut(s)	524
MboII	GAAGA	2 cut(s)	289, 608
MlsI	TGGCCA	1 cut(s)	264
MluCI	AATT	2 cut(s)	98, 341
MluNI	TGGCCA	1 cut(s)	264
MlyI	GAGTC	1 cut(s)	141
MnlI	CCTC	6 cut(s)	17, 72, 216, 339, 609, 673
Mox20I	TGGCCA	1 cut(s)	264
MscI	TGGCCA	1 cut(s)	264
MseI	TTAA	2 cut(s)	75, 225
Msp20I	TGGCCA	1 cut(s)	264
MspA1I	CMGCKG	1 cut(s)	441
MspR9I	CCNGG	1 cut(s)	583
MvaI	CCWGG	1 cut(s)	583
MwoI	GCNNNNNNNGC	1 cut(s)	270
NcoI	CCATGG	2 cut(s)	31, 288
NdeI	CATATG	2 cut(s)	307, 377
NdeII	GATC	1 cut(s)	524
NlaIII	CATG	4 cut(s)	35, 221, 272, 292
NlaIV	GGNNCC	2 cut(s)	62, 348
PaeR7I	CTCGAG	1 cut(s)	129
PasI	CCCWGGG	1 cut(s)	582
PfeI	GAWTC	3 cut(s)	52, 152, 565
PflMI	CCANNNNNTGG	1 cut(s)	37
PkrI	GCNGC	1 cut(s)	440
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
Ppu21I	YACGTR	1 cut(s)	197
Psp6I	CCWGG	1 cut(s)	581
PspGI	CCWGG	1 cut(s)	581
PspN4I	GGNNCC	2 cut(s)	62, 348
PspPI	GGNCC	2 cut(s)	4, 189
PstNI	CAGNNNCTG	2 cut(s)	148, 359
PvuII	CAGCTG	1 cut(s)	441
RsaI	GTAC	3 cut(s)	62, 199, 204
RsaNI	GTAC	3 cut(s)	61, 198, 203
SaqAI	TTAA	2 cut(s)	75, 225
SatI	GCNGC	1 cut(s)	439
Sau3AI	GATC	1 cut(s)	524
Sau96I	GGNCC	2 cut(s)	4, 189
SchI	GAGTC	1 cut(s)	141
ScrFI	CCNGG	1 cut(s)	583
SetI	ASST	8 cut(s)	199, 208, 286, 305, 325, 417, 443, 490
Sfr274I	CTCGAG	1 cut(s)	129
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	1 cut(s)	129
SmlI	CTYRAG	1 cut(s)	129
SmoI	CTYRAG	1 cut(s)	129
SnaBI	TACGTA	1 cut(s)	197
Sse9I	AATT	2 cut(s)	98, 341
SsiI	CCGC	2 cut(s)	550, 607
StyD4I	CCNGG	1 cut(s)	581
StyI	CCWWGG	2 cut(s)	31, 288
TaaI	ACNGT	2 cut(s)	72, 202
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	130
TasI	AATT	2 cut(s)	98, 341
TfiI	GAWTC	3 cut(s)	52, 152, 565
Tru1I	TTAA	2 cut(s)	75, 225
Tru9I	TTAA	2 cut(s)	75, 225
TscAI	CASTG	2 cut(s)	16, 121
TseI	GCWGC	1 cut(s)	438
TspDTI	ATGAA	1 cut(s)	225
TspRI	CASTG	2 cut(s)	16, 121
Van91I	CCANNNNNTGG	1 cut(s)	37
VpaK11BI	GGWCC	1 cut(s)	4
XhoI	CTCGAG	1 cut(s)	129
XmiI	GTMKAC	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.