Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006757.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

20109 .. 22232

Gene Structure 2124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

atgctaattcacccaagggttaagcctcagcaccgtgaagaaggggaaggggaaatttggaagaagatcaaggggatcaaggggagtctcaaccgtttgcctccggcttgcgtcagcaacatggtgatggccaccgtgaagaagggaaagtcggatttgaggaagaaggtgcttgctttgctccgagttaactcgctctctgtttttatgtatgcaaggatggccgtcatgatgcatgctaagttaaaccagaataacctcaaccaaatcgacctcattagagattcagattctggtttcagtgtttcaatcaagtatgagactggtggcttcagcgcaggccatacgcatgtcgaggtggagaatcggcaaggcggaggccaagaagaagatgacgtaaacgtagaggatcgcggagttgatcaaccacaggggagagagatcggaggttacggttccgagcaccgagtaaccggaggagatcgggagatcgatcggcagcatgatcatcaggccgccggcttctttgtcgttcgcccggccaccaagaggaactgcggcggagggcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0019843 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070180 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14

Protein Analysis

190

Amino Acids

21.04

Weight (kDa)

9.12

Isoelectric Point (pI)

37.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	414
AciI	CCGC	5 cut(s)	375, 414, 516, 558, 561
AclWI	GGATC	2 cut(s)	83, 417
AcoI	YGGCCR	3 cut(s)	129, 222, 540
AcsI	RAATTY	1 cut(s)	54
AcuI	CTGAAG	1 cut(s)	316
AfiI	CCNNNNNNNGG	1 cut(s)	549
AgsI	TTSAA	1 cut(s)	309
Alw21I	GWGCWC	1 cut(s)	465
Alw26I	GTCTC	2 cut(s)	92, 314
AlwI	GGATC	2 cut(s)	83, 417
AlwNI	CAGNNNCTG	1 cut(s)	293
AoxI	GGCC	6 cut(s)	129, 222, 340, 379, 513, 540
ApeKI	GCWGC	1 cut(s)	499
ApoI	RAATTY	1 cut(s)	54
AspLEI	GCGC	1 cut(s)	338
AsuC2I	CCSGG	1 cut(s)	539
AsuHPI	GGTGA	1 cut(s)	136
BalI	TGGCCA	1 cut(s)	131
Bbv12I	GWGCWC	1 cut(s)	465
BbvCI	CCTCAGC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	511
BccI	CCATC	2 cut(s)	121, 214
BceAI	ACGGC	1 cut(s)	209
BclI	TGATCA	2 cut(s)	421, 505
BcnI	CCSGG	1 cut(s)	539
BcoDI	GTCTC	2 cut(s)	92, 314
BisI	GCNGC	3 cut(s)	500, 516, 559
BlsI	GCNGC	3 cut(s)	501, 517, 560
Bme1390I	CCNGG	1 cut(s)	539
BmiI	GGNNCC	1 cut(s)	457
BmrFI	CCNGG	1 cut(s)	539
BmsI	GCATC	1 cut(s)	222
Bpu10I	CCTNAGC	1 cut(s)	27
BpuMI	CCSGG	1 cut(s)	539
Bsa29I	ATCGAT	1 cut(s)	492
BsaJI	CCNNGG	1 cut(s)	14
BsaWI	WCCGGW	1 cut(s)	473
Bsc4I	CCNNNNNNNGG	1 cut(s)	549
Bse118I	RCCGGY	1 cut(s)	518
Bse1I	ACTGG	1 cut(s)	328
BseCI	ATCGAT	1 cut(s)	492
BseDI	CCNNGG	1 cut(s)	14
BseGI	GGATG	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	549
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	328
BseRI	GAGGAG	1 cut(s)	492
BseXI	GCAGC	1 cut(s)	511
Bsh1236I	CGCG	1 cut(s)	414
Bsh1285I	CGRYCG	1 cut(s)	496
BshFI	GGCC	6 cut(s)	131, 224, 342, 381, 515, 542
BshVI	ATCGAT	1 cut(s)	492
BsiEI	CGRYCG	1 cut(s)	496
BsiHKAI	GWGCWC	1 cut(s)	465
BsiSI	CCGG	4 cut(s)	104, 474, 519, 539
BslI	CCNNNNNNNGG	1 cut(s)	549
BsmAI	GTCTC	2 cut(s)	92, 314
BsnI	GGCC	6 cut(s)	131, 224, 342, 381, 515, 542
Bsp1286I	GDGCHC	1 cut(s)	465
Bsp143I	GATC	9 cut(s)	66, 75, 409, 421, 441, 481, 489, 493, 505
BspACI	CCGC	5 cut(s)	375, 414, 516, 558, 561
BspANI	GGCC	6 cut(s)	131, 224, 342, 381, 515, 542
BspCNI	CTCAG	1 cut(s)	40
BspDI	ATCGAT	1 cut(s)	492
BspFNI	CGCG	1 cut(s)	414
BspHI	TCATGA	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	457
BspPI	GGATC	2 cut(s)	83, 417
BsrFI	RCCGGY	1 cut(s)	518
BsrI	ACTGG	1 cut(s)	328
BssAI	RCCGGY	1 cut(s)	518
BssECI	CCNNGG	1 cut(s)	14
BssMI	GATC	9 cut(s)	66, 75, 409, 421, 441, 481, 489, 493, 505
BssT1I	CCWWGG	1 cut(s)	14
Bst4CI	ACNGT	4 cut(s)	35, 95, 136, 455
BstC8I	GCNNGC	5 cut(s)	109, 174, 237, 340, 520
BstDEI	CTNAG	2 cut(s)	27, 240
BstF5I	GGATG	1 cut(s)	225
BstFNI	CGCG	1 cut(s)	414
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	9 cut(s)	69, 78, 412, 424, 444, 484, 492, 496, 508
BstMAI	GTCTC	2 cut(s)	92, 314
BstMBI	GATC	9 cut(s)	66, 75, 409, 421, 441, 481, 489, 493, 505
BstMCI	CGRYCG	1 cut(s)	496
BstMWI	GCNNNNNNNGC	2 cut(s)	178, 221
BstNSI	RCATGY	2 cut(s)	239, 353
BstSCI	CCNGG	1 cut(s)	537
BstUI	CGCG	1 cut(s)	414
BstV1I	GCAGC	1 cut(s)	511
Bsu15I	ATCGAT	1 cut(s)	492
BsuRI	GGCC	6 cut(s)	131, 224, 342, 381, 515, 542
BsuTUI	ATCGAT	1 cut(s)	492
BtsCI	GGATG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	307
Cac8I	GCNNGC	5 cut(s)	109, 174, 237, 340, 520
CaiI	CAGNNNCTG	1 cut(s)	293
CciI	TCATGA	1 cut(s)	228
CfoI	GCGC	1 cut(s)	338
Cfr10I	RCCGGY	1 cut(s)	518
ClaI	ATCGAT	1 cut(s)	492
CseI	GACGC	1 cut(s)	100
CviAII	CATG	5 cut(s)	121, 229, 236, 350, 503
DdeI	CTNAG	2 cut(s)	27, 240
DpnI	GATC	9 cut(s)	68, 77, 411, 423, 443, 483, 491, 495, 507
DpnII	GATC	9 cut(s)	66, 75, 409, 421, 441, 481, 489, 493, 505
EaeI	YGGCCR	3 cut(s)	129, 222, 540
EciI	GGCGGA	1 cut(s)	390
Eco130I	CCWWGG	1 cut(s)	14
Eco57I	CTGAAG	1 cut(s)	316
EcoT14I	CCWWGG	1 cut(s)	14
EcoT22I	ATGCAT	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	14
FaeI	CATG	5 cut(s)	124, 232, 239, 353, 506
FaiI	YATR	9 cut(s)	122, 209, 213, 230, 237, 318, 345, 351, 504
FatI	CATG	5 cut(s)	120, 228, 235, 349, 502
FbaI	TGATCA	2 cut(s)	421, 505
Fnu4HI	GCNGC	3 cut(s)	500, 516, 559
FokI	GGATG	1 cut(s)	232
Fsp4HI	GCNGC	3 cut(s)	500, 516, 559
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	3 cut(s)	500, 516, 559
HaeIII	GGCC	6 cut(s)	131, 224, 342, 381, 515, 542
HapII	CCGG	4 cut(s)	104, 474, 519, 539
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	1 cut(s)	338
Hin1II	CATG	5 cut(s)	124, 232, 239, 353, 506
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	4 cut(s)	85, 284, 290, 364
HpaI	GTTAAC	1 cut(s)	190
HpaII	CCGG	4 cut(s)	104, 474, 519, 539
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	2 cut(s)	190, 400
Hpy188I	TCNGA	5 cut(s)	154, 185, 289, 446, 460
Hpy188III	TCNNGA	2 cut(s)	229, 485
Hpy8I	GTNNAC	2 cut(s)	190, 400
HpyAV	CCTTC	4 cut(s)	35, 41, 136, 160
HpyCH4III	ACNGT	4 cut(s)	35, 95, 136, 455
HpyCH4IV	ACGT	2 cut(s)	396, 402
HpyCH4V	TGCA	2 cut(s)	215, 235
HpyF10VI	GCNNNNNNNGC	2 cut(s)	178, 221
HpyF3I	CTNAG	2 cut(s)	27, 240
HpySE526I	ACGT	2 cut(s)	396, 402
Hsp92II	CATG	5 cut(s)	124, 232, 239, 353, 506
HspAI	GCGC	1 cut(s)	336
KroI	GCCGGC	1 cut(s)	518
KroNI	GCCGGC	1 cut(s)	520
Ksp22I	TGATCA	2 cut(s)	421, 505
KspAI	GTTAAC	1 cut(s)	190
Kzo9I	GATC	9 cut(s)	66, 75, 409, 421, 441, 481, 489, 493, 505
LmnI	GCTCC	1 cut(s)	186
Lsp1109I	GCAGC	1 cut(s)	511
LweI	GCATC	1 cut(s)	222
MaeII	ACGT	2 cut(s)	396, 402
MaeIII	GTNAC	2 cut(s)	449, 469
MalI	GATC	9 cut(s)	68, 77, 411, 423, 443, 483, 491, 495, 507
MboI	GATC	9 cut(s)	66, 75, 409, 421, 441, 481, 489, 493, 505
MboII	GAAGA	7 cut(s)	50, 73, 76, 151, 175, 398, 401
MhlI	GDGCHC	1 cut(s)	465
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	2 cut(s)	6, 54
MluNI	TGGCCA	1 cut(s)	131
MlyI	GAGTC	1 cut(s)	94
MmeI	TCCRAC	1 cut(s)	132
Mox20I	TGGCCA	1 cut(s)	131
Mph1103I	ATGCAT	1 cut(s)	237
MroNI	GCCGGC	1 cut(s)	518
MscI	TGGCCA	1 cut(s)	131
MseI	TTAA	3 cut(s)	21, 189, 245
MslI	CAYNNNNRTG	2 cut(s)	125, 348
Msp20I	TGGCCA	1 cut(s)	131
MspI	CCGG	4 cut(s)	104, 474, 519, 539
MspR9I	CCNGG	1 cut(s)	539
MvnI	CGCG	1 cut(s)	414
MwoI	GCNNNNNNNGC	2 cut(s)	178, 221
NaeI	GCCGGC	1 cut(s)	520
NciI	CCSGG	1 cut(s)	539
NdeII	GATC	9 cut(s)	66, 75, 409, 421, 441, 481, 489, 493, 505
NgoMIV	GCCGGC	1 cut(s)	518
NlaIII	CATG	5 cut(s)	124, 232, 239, 353, 506
NlaIV	GGNNCC	1 cut(s)	457
NsiI	ATGCAT	1 cut(s)	237
NspI	RCATGY	2 cut(s)	239, 353
PaeI	GCATGC	1 cut(s)	239
PagI	TCATGA	1 cut(s)	228
PdiI	GCCGGC	1 cut(s)	520
PfeI	GAWTC	3 cut(s)	284, 290, 364
PkrI	GCNGC	3 cut(s)	501, 517, 560
Ple19I	CGATCG	1 cut(s)	496
PleI	GAGTC	1 cut(s)	93
PpsI	GAGTC	1 cut(s)	93
PspN4I	GGNNCC	1 cut(s)	457
PstNI	CAGNNNCTG	1 cut(s)	293
PvuI	CGATCG	1 cut(s)	496
RseI	CAYNNNNRTG	2 cut(s)	125, 348
SaqAI	TTAA	3 cut(s)	21, 189, 245
SatI	GCNGC	3 cut(s)	500, 516, 559
Sau3AI	GATC	9 cut(s)	66, 75, 409, 421, 441, 481, 489, 493, 505
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	1 cut(s)	539
SduI	GDGCHC	1 cut(s)	465
SetI	ASST	7 cut(s)	171, 261, 276, 360, 399, 405, 451
SfaNI	GCATC	1 cut(s)	222
SmiMI	CAYNNNNRTG	2 cut(s)	125, 348
SphI	GCATGC	1 cut(s)	239
Sse9I	AATT	2 cut(s)	6, 54
SsiI	CCGC	5 cut(s)	375, 414, 516, 558, 561
StyD4I	CCNGG	1 cut(s)	537
StyI	CCWWGG	1 cut(s)	14
TaaI	ACNGT	4 cut(s)	35, 95, 136, 455
TaiI	ACGT	2 cut(s)	399, 405
TaqI	TCGA	3 cut(s)	270, 354, 492
TasI	AATT	2 cut(s)	6, 54
TauI	GCSGC	2 cut(s)	518, 561
TfiI	GAWTC	3 cut(s)	284, 290, 364
Tru1I	TTAA	3 cut(s)	21, 189, 245
Tru9I	TTAA	3 cut(s)	21, 189, 245
TscAI	CASTG	1 cut(s)	307
TseI	GCWGC	1 cut(s)	499
TspRI	CASTG	1 cut(s)	307
XapI	RAATTY	1 cut(s)	54
XceI	RCATGY	2 cut(s)	239, 353
Zsp2I	ATGCAT	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.