Rmu_sc0006803.1_g000038

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006803.1
N/A
Physical Location & Seq
Forward (+)
200780 .. 201073
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006803.1_g000038.1.cds

Sequence Viewer

Length: 294 bp
atgtcgaatggcagttttgaagcacttgaagcaacaagacaagccatggttgagctcatgaagacattagaaaatgatgaggtcgctgccattggggtccatggaatgggaggagttgggaagacaactctggtcaaataccttagtgcacaagcccttaaaaaaaaggcttttggatcatgtgattatggctgttgtatcccaaaccccaaatacaagaaacactcaaggcacacttgcggatctgctgggcatgaaattggaggagaagacagaaattggacgagctggtag

Protein Analysis

97

Amino Acids

10.49

Weight (kDa)

8.38

Isoelectric Point (pI)

21.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 106
AciI CCGC 1 cut(s) 240
AclWI GGATC 2 cut(s) 184, 250
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 2 cut(s) 20, 29
AluBI AGCT 2 cut(s) 55, 288
AluI AGCT 2 cut(s) 55, 288
Alw21I GWGCWC 2 cut(s) 57, 151
Alw44I GTGCAC 1 cut(s) 147
AlwI GGATC 2 cut(s) 184, 250
ApaLI GTGCAC 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 97
AvaII GGWCC 1 cut(s) 97
BaeGI GKGCMC 1 cut(s) 151
BanII GRGCYC 1 cut(s) 57
BbsI GAAGAC 3 cut(s) 68, 128, 276
Bbv12I GWGCWC 2 cut(s) 57, 151
BbvI GCAGC 1 cut(s) 73
BciVI GTATCC 1 cut(s) 209
BfuI GTATCC 1 cut(s) 209
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
Bme18I GGWCC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 97
BmiI GGNNCC 1 cut(s) 98
BpiI GAAGAC 3 cut(s) 68, 128, 276
BpuEI CTTGAG 1 cut(s) 211
BsaJI CCNNGG 2 cut(s) 45, 100
Bsc4I CCNNNNNNNGG 1 cut(s) 106
BseDI CCNNGG 2 cut(s) 45, 100
BseLI CCNNNNNNNGG 1 cut(s) 106
BseRI GAGGAG 2 cut(s) 126, 279
BseSI GKGCMC 1 cut(s) 151
BseXI GCAGC 1 cut(s) 73
BseYI CCCAGC 1 cut(s) 248
BsiHKAI GWGCWC 2 cut(s) 57, 151
BslI CCNNNNNNNGG 1 cut(s) 106
Bsp1286I GDGCHC 2 cut(s) 57, 151
Bsp143I GATC 2 cut(s) 176, 242
Bsp19I CCATGG 2 cut(s) 45, 100
BspACI CCGC 1 cut(s) 240
BspHI TCATGA 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 98
BspPI GGATC 2 cut(s) 184, 250
BssECI CCNNGG 2 cut(s) 45, 100
BssMI GATC 2 cut(s) 176, 242
BssT1I CCWWGG 2 cut(s) 45, 100
BstDEI CTNAG 1 cut(s) 143
BstDSI CCRYGG 2 cut(s) 45, 100
BstKTI GATC 2 cut(s) 179, 245
BstMBI GATC 2 cut(s) 176, 242
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstSLI GKGCMC 1 cut(s) 151
BstV1I GCAGC 1 cut(s) 73
BstV2I GAAGAC 3 cut(s) 68, 128, 276
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
BsuI GTATCC 1 cut(s) 209
BtgI CCRYGG 2 cut(s) 45, 100
CciI TCATGA 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 97
CviAII CATG 5 cut(s) 46, 58, 101, 180, 254
CviJI RGCY 6 cut(s) 44, 55, 155, 170, 192, 288
CviKI_1 RGCY 6 cut(s) 44, 55, 155, 170, 192, 288
DdeI CTNAG 1 cut(s) 143
DpnI GATC 2 cut(s) 178, 244
DpnII GATC 2 cut(s) 176, 242
Ecl136II GAGCTC 1 cut(s) 55
Eco130I CCWWGG 2 cut(s) 45, 100
Eco24I GRGCYC 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 97
Eco53kI GAGCTC 1 cut(s) 55
EcoICRI GAGCTC 1 cut(s) 55
EcoT14I CCWWGG 2 cut(s) 45, 100
EcoT38I GRGCYC 1 cut(s) 57
ErhI CCWWGG 2 cut(s) 45, 100
FaeI CATG 5 cut(s) 49, 61, 104, 183, 257
FaiI YATR 6 cut(s) 47, 59, 102, 181, 189, 255
FalI AAGNNNNNCTT 2 cut(s) 220, 252
FatI CATG 5 cut(s) 45, 57, 100, 179, 253
Fnu4HI GCNGC 1 cut(s) 87
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 87
GluI GCNGC 1 cut(s) 87
GsaI CCCAGC 1 cut(s) 252
Hin1II CATG 5 cut(s) 49, 61, 104, 183, 257
Hpy166II GTNNAC 1 cut(s) 149
Hpy188III TCNNGA 1 cut(s) 58
Hpy8I GTNNAC 1 cut(s) 149
HpyCH4V TGCA 1 cut(s) 149
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 1 cut(s) 143
Hsp92II CATG 5 cut(s) 49, 61, 104, 183, 257
Kzo9I GATC 2 cut(s) 176, 242
LpnPI CCDG 3 cut(s) 116, 234, 274
Lsp1109I GCAGC 1 cut(s) 73
MalI GATC 2 cut(s) 178, 244
MboI GATC 2 cut(s) 176, 242
MboII GAAGA 3 cut(s) 73, 133, 281
MflI RGATCY 1 cut(s) 242
MhlI GDGCHC 2 cut(s) 57, 151
MluCI AATT 2 cut(s) 258, 277
MnlI CCTC 3 cut(s) 73, 104, 257
MseI TTAA 1 cut(s) 159
MwoI GCNNNNNNNGC 1 cut(s) 29
NcoI CCATGG 2 cut(s) 45, 100
NdeII GATC 2 cut(s) 176, 242
NlaIII CATG 5 cut(s) 49, 61, 104, 183, 257
NlaIV GGNNCC 1 cut(s) 98
PagI TCATGA 1 cut(s) 57
PflMI CCANNNNNTGG 1 cut(s) 106
PkrI GCNGC 1 cut(s) 88
Psp124BI GAGCTC 1 cut(s) 57
PspFI CCCAGC 1 cut(s) 248
PspN4I GGNNCC 1 cut(s) 98
PspPI GGNCC 1 cut(s) 97
PsuI RGATCY 1 cut(s) 242
SacI GAGCTC 1 cut(s) 57
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 2 cut(s) 176, 242
Sau96I GGNCC 1 cut(s) 97
SduI GDGCHC 2 cut(s) 57, 151
SetI ASST 4 cut(s) 57, 84, 144, 290
SinI GGWCC 1 cut(s) 97
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
Sse9I AATT 2 cut(s) 258, 277
SsiI CCGC 1 cut(s) 240
SstI GAGCTC 1 cut(s) 57
StyI CCWWGG 2 cut(s) 45, 100
TaqI TCGA 1 cut(s) 5
TasI AATT 2 cut(s) 258, 277
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TseI GCWGC 1 cut(s) 86
TspDTI ATGAA 2 cut(s) 74, 270
Van91I CCANNNNNTGG 1 cut(s) 106
VneI GTGCAC 1 cut(s) 147
VpaK11BI GGWCC 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.