Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006822.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

22212 .. 23298

Gene Structure 1087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atggcggtgccccaagagcagccgagactcatcatgcacataagcgctagtgccctcggggccaggagatattgggacttagccatggctgccacagcccgcaggtcctggtcgatagtgacgcggcggtcagtgtcatgtttggtagctactatgaaggcctcaaccgagacaaaaagaaactcacgcaagaccacgagccctgatcagctttataggagaaatcacacagcctttgggcacatgctaatgatgaaaatccctaccctgggtggcatcctcaccattcgaggcgatcaggaattggcgagacagtgtaactccttgactgtcgcgcagggacatggcaggcgagaggtactcctcacgtcagacttgccctccccgttagacaagctagactacctaagggaaaaccccgagactccagatgactgcgatacacgcagtaaaaagatggaagataagcgcaagctcaagcacccgagattagacgccttggaagatctgatattggtttccattttctatacccaaccagaaagaaaggtcaagataggctctaagacagacccacagttccaagtagacttaatcgccttcctcaagaccagacaggaggtgtttgtgtggtcatacacctatatgccagggatatcaccggaaatgctgacccacaagcccaccatctccccaaatgttcccccggtaaggcagaagagaagggccttcatggaagagaagtacaagctatctaggatgaggtcaagaaactccaagatattggatttgtcagggaggtatcctacccgacatggctatccaatgtcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

277

Amino Acids

31.92

Weight (kDa)

10.11

Isoelectric Point (pI)

65.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	127
Acc36I	ACCTGC	1 cut(s)	93
AccB1I	GGYRCC	1 cut(s)	7
AccI	GTMKAC	1 cut(s)	588
AccII	CGCG	2 cut(s)	124, 335
AciI	CCGC	4 cut(s)	5, 100, 124, 127
AcyI	GRCGYC	1 cut(s)	495
AfaI	GTAC	2 cut(s)	360, 746
AfeI	AGCGCT	1 cut(s)	46
AfiI	CCNNNNNNNGG	3 cut(s)	268, 269, 711
AjiI	CACGTC	1 cut(s)	369
AjnI	CCWGG	4 cut(s)	62, 107, 267, 649
AluBI	AGCT	5 cut(s)	149, 211, 397, 475, 751
AluI	AGCT	5 cut(s)	149, 211, 397, 475, 751
Alw26I	GTCTC	4 cut(s)	19, 164, 304, 416
AlwNI	CAGNNNCTG	1 cut(s)	108
Ama87I	CYCGRG	3 cut(s)	56, 419, 484
Aor51HI	AGCGCT	1 cut(s)	46
AoxI	GGCC	3 cut(s)	60, 159, 726
ApeKI	GCWGC	2 cut(s)	19, 89
AspLEI	GCGC	3 cut(s)	47, 337, 471
AspS9I	GGNCC	3 cut(s)	60, 105, 726
AsuC2I	CCSGG	1 cut(s)	707
AsuHPI	GGTGA	2 cut(s)	274, 651
AvaI	CYCGRG	3 cut(s)	56, 419, 484
AvaII	GGWCC	1 cut(s)	105
AxyI	CCTNAGG	1 cut(s)	407
BaeGI	GKGCMC	3 cut(s)	12, 55, 243
BanI	GGYRCC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	203
BauI	CACGAG	1 cut(s)	196
BbvI	GCAGC	2 cut(s)	31, 76
BccI	CCATC	2 cut(s)	451, 695
BciT130I	CCWGG	4 cut(s)	64, 109, 269, 651
BciVI	GTATCC	1 cut(s)	813
BclI	TGATCA	1 cut(s)	205
BcnI	CCSGG	1 cut(s)	707
BcoDI	GTCTC	4 cut(s)	19, 164, 304, 416
BfaI	CTAG	3 cut(s)	48, 398, 756
BfoI	RGCGCY	1 cut(s)	48
BfuAI	ACCTGC	1 cut(s)	93
BfuI	GTATCC	1 cut(s)	813
BglI	GCCNNNNNGGC	1 cut(s)	59
BglII	AGATCT	1 cut(s)	505
BisI	GCNGC	3 cut(s)	20, 90, 125
BlsI	GCNGC	3 cut(s)	21, 91, 126
Bme1390I	CCNGG	5 cut(s)	64, 109, 269, 651, 707
Bme18I	GGWCC	1 cut(s)	105
BmeT110I	CYCGRG	3 cut(s)	56, 419, 484
BmgBI	CACGTC	1 cut(s)	369
BmgT120I	GGNCC	3 cut(s)	60, 105, 726
BmiI	GGNNCC	2 cut(s)	9, 61
BmrFI	CCNGG	5 cut(s)	64, 109, 269, 651, 707
BmsI	GCATC	1 cut(s)	285
BplI	GAGNNNNNCTC	2 cut(s)	345, 377
BpmI	CTGGAG	1 cut(s)	411
BpuEI	CTTGAG	2 cut(s)	461, 590
BpuMI	CCSGG	1 cut(s)	707
BsaBI	GATNNNNATC	1 cut(s)	257
BsaHI	GRCGYC	1 cut(s)	495
BsaJI	CCNNGG	7 cut(s)	55, 84, 267, 268, 498, 650, 705
BsaWI	WCCGGW	1 cut(s)	661
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bsc4I	CCNNNNNNNGG	3 cut(s)	268, 269, 711
Bse21I	CCTNAGG	1 cut(s)	407
Bse8I	GATNNNNATC	1 cut(s)	257
BseBI	CCWGG	4 cut(s)	64, 109, 269, 651
BseDI	CCNNGG	7 cut(s)	55, 84, 267, 268, 498, 650, 705
BseGI	GGATG	2 cut(s)	276, 765
BseJI	GATNNNNATC	1 cut(s)	257
BseLI	CCNNNNNNNGG	3 cut(s)	268, 269, 711
BseRI	GAGGAG	1 cut(s)	353
BseSI	GKGCMC	3 cut(s)	12, 55, 243
BseXI	GCAGC	2 cut(s)	31, 76
Bsh1236I	CGCG	2 cut(s)	124, 335
BshFI	GGCC	3 cut(s)	62, 161, 728
BshNI	GGYRCC	1 cut(s)	7
BsiHKCI	CYCGRG	3 cut(s)	56, 419, 484
BsiSI	CCGG	2 cut(s)	662, 707
BslFI	GGGAC	2 cut(s)	89, 354
BslI	CCNNNNNNNGG	3 cut(s)	268, 269, 711
BsmAI	GTCTC	4 cut(s)	19, 164, 304, 416
BsmFI	GGGAC	2 cut(s)	89, 354
BsnI	GGCC	3 cut(s)	62, 161, 728
BsoBI	CYCGRG	3 cut(s)	56, 419, 484
Bsp1286I	GDGCHC	4 cut(s)	12, 55, 203, 243
Bsp143I	GATC	3 cut(s)	205, 295, 505
Bsp19I	CCATGG	1 cut(s)	84
BspACI	CCGC	4 cut(s)	5, 100, 124, 127
BspANI	GGCC	3 cut(s)	62, 161, 728
BspFNI	CGCG	2 cut(s)	124, 335
BspLI	GGNNCC	2 cut(s)	9, 61
BspMI	ACCTGC	1 cut(s)	93
BspT107I	GGYRCC	1 cut(s)	7
BssECI	CCNNGG	7 cut(s)	55, 84, 267, 268, 498, 650, 705
BssMI	GATC	3 cut(s)	205, 295, 505
BssNI	GRCGYC	1 cut(s)	495
BssSI	CACGAG	1 cut(s)	196
BssT1I	CCWWGG	2 cut(s)	84, 498
Bst2BI	CACGAG	1 cut(s)	196
Bst2UI	CCWGG	4 cut(s)	64, 109, 269, 651
Bst4CI	ACNGT	3 cut(s)	315, 331, 579
Bst6I	CTCTTC	2 cut(s)	713, 732
BstACI	GRCGYC	1 cut(s)	495
BstC8I	GCNNGC	3 cut(s)	100, 350, 473
BstDEI	CTNAG	3 cut(s)	79, 407, 564
BstDSI	CCRYGG	1 cut(s)	84
BstF5I	GGATG	2 cut(s)	276, 765
BstFNI	CGCG	2 cut(s)	124, 335
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	3 cut(s)	47, 337, 471
BstKTI	GATC	3 cut(s)	208, 298, 508
BstMAI	GTCTC	4 cut(s)	19, 164, 304, 416
BstMBI	GATC	3 cut(s)	205, 295, 505
BstMWI	GCNNNNNNNGC	5 cut(s)	16, 59, 89, 95, 444
BstNI	CCWGG	4 cut(s)	64, 109, 269, 651
BstNSI	RCATGY	1 cut(s)	247
BstSCI	CCNGG	5 cut(s)	62, 107, 267, 649, 705
BstSLI	GKGCMC	3 cut(s)	12, 55, 243
BstUI	CGCG	2 cut(s)	124, 335
BstV1I	GCAGC	2 cut(s)	31, 76
BstX2I	RGATCY	1 cut(s)	505
BstXI	CCANNNNNNTGG	1 cut(s)	784
BstYI	RGATCY	1 cut(s)	505
Bsu36I	CCTNAGG	1 cut(s)	407
BsuI	GTATCC	1 cut(s)	813
BsuRI	GGCC	3 cut(s)	62, 161, 728
BtgI	CCRYGG	1 cut(s)	84
BtrI	CACGTC	1 cut(s)	369
BtsCI	GGATG	2 cut(s)	276, 765
BtsIMutI	CAGTG	2 cut(s)	138, 320
BveI	ACCTGC	1 cut(s)	93
Cac8I	GCNNGC	3 cut(s)	100, 350, 473
CaiI	CAGNNNCTG	1 cut(s)	108
CfoI	GCGC	3 cut(s)	47, 337, 471
Cfr13I	GGNCC	3 cut(s)	60, 105, 726
CseI	GACGC	2 cut(s)	130, 503
Csp6I	GTAC	2 cut(s)	359, 745
CviAII	CATG	7 cut(s)	34, 85, 138, 244, 344, 733, 815
CviQI	GTAC	2 cut(s)	359, 745
DdeI	CTNAG	3 cut(s)	79, 407, 564
DpnI	GATC	3 cut(s)	207, 297, 507
DpnII	GATC	3 cut(s)	205, 295, 505
DrdI	GACNNNNNNGTC	1 cut(s)	127
DseDI	GACNNNNNNGTC	1 cut(s)	127
Eam1104I	CTCTTC	2 cut(s)	713, 732
EarI	CTCTTC	2 cut(s)	713, 732
Eco130I	CCWWGG	2 cut(s)	84, 498
Eco147I	AGGCCT	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	203
Eco32I	GATATC	1 cut(s)	657
Eco47I	GGWCC	1 cut(s)	105
Eco47III	AGCGCT	1 cut(s)	46
Eco81I	CCTNAGG	1 cut(s)	407
Eco88I	CYCGRG	3 cut(s)	56, 419, 484
EcoO109I	RGGNCCY	2 cut(s)	105, 726
EcoRII	CCWGG	4 cut(s)	62, 107, 267, 649
EcoRV	GATATC	1 cut(s)	657
EcoT14I	CCWWGG	2 cut(s)	84, 498
EcoT38I	GRGCYC	1 cut(s)	203
ErhI	CCWWGG	2 cut(s)	84, 498
FaeI	CATG	7 cut(s)	37, 88, 141, 247, 347, 736, 818
FaqI	GGGAC	2 cut(s)	89, 354
FatI	CATG	7 cut(s)	33, 84, 137, 243, 343, 732, 814
FauI	CCCGC	1 cut(s)	107
FbaI	TGATCA	1 cut(s)	205
FblI	GTMKAC	1 cut(s)	588
Fnu4HI	GCNGC	3 cut(s)	20, 90, 125
FokI	GGATG	2 cut(s)	263, 772
FriOI	GRGCYC	1 cut(s)	203
Fsp4HI	GCNGC	3 cut(s)	20, 90, 125
FspBI	CTAG	3 cut(s)	48, 398, 756
GlaI	GCGC	3 cut(s)	46, 336, 470
GluI	GCNGC	3 cut(s)	20, 90, 125
GsuI	CTGGAG	1 cut(s)	411
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	3 cut(s)	62, 161, 728
HapII	CCGG	2 cut(s)	662, 707
HgaI	GACGC	2 cut(s)	130, 503
HhaI	GCGC	3 cut(s)	47, 337, 471
Hin1I	GRCGYC	1 cut(s)	495
Hin1II	CATG	7 cut(s)	37, 88, 141, 247, 347, 736, 818
Hin6I	GCGC	3 cut(s)	45, 335, 469
HinP1I	GCGC	3 cut(s)	45, 335, 469
HinfI	GANTC	2 cut(s)	27, 424
HpaII	CCGG	2 cut(s)	662, 707
HphI	GGTGA	2 cut(s)	274, 651
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188I	TCNGA	2 cut(s)	373, 510
Hpy188III	TCNNGA	6 cut(s)	299, 428, 553, 607, 768, 831
Hpy8I	GTNNAC	1 cut(s)	589
HpyAV	CCTTC	4 cut(s)	151, 610, 717, 739
HpyCH4III	ACNGT	3 cut(s)	315, 331, 579
HpyCH4IV	ACGT	1 cut(s)	368
HpyCH4V	TGCA	1 cut(s)	37
HpyF10VI	GCNNNNNNNGC	5 cut(s)	16, 59, 89, 95, 444
HpyF3I	CTNAG	3 cut(s)	79, 407, 564
HpySE526I	ACGT	1 cut(s)	368
Hsp92I	GRCGYC	1 cut(s)	495
Hsp92II	CATG	7 cut(s)	37, 88, 141, 247, 347, 736, 818
HspAI	GCGC	3 cut(s)	45, 335, 469
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	3 cut(s)	205, 295, 505
Lsp1109I	GCAGC	2 cut(s)	31, 76
LweI	GCATC	1 cut(s)	285
MaeI	CTAG	3 cut(s)	48, 398, 756
MaeII	ACGT	1 cut(s)	368
MaeIII	GTNAC	2 cut(s)	118, 317
MalI	GATC	3 cut(s)	207, 297, 507
MboI	GATC	3 cut(s)	205, 295, 505
MboII	GAAGA	4 cut(s)	473, 515, 730, 749
MflI	RGATCY	1 cut(s)	505
MhlI	GDGCHC	4 cut(s)	12, 55, 203, 243
MluCI	AATT	1 cut(s)	302
MlyI	GAGTC	2 cut(s)	21, 418
MseI	TTAA	1 cut(s)	593
MslI	CAYNNNNRTG	2 cut(s)	248, 644
MspI	CCGG	2 cut(s)	662, 707
MspR9I	CCNGG	5 cut(s)	64, 109, 269, 651, 707
MvaI	CCWGG	4 cut(s)	64, 109, 269, 651
MvnI	CGCG	2 cut(s)	124, 335
MwoI	GCNNNNNNNGC	5 cut(s)	16, 59, 89, 95, 444
NciI	CCSGG	1 cut(s)	707
NcoI	CCATGG	1 cut(s)	84
NdeII	GATC	3 cut(s)	205, 295, 505
NlaIII	CATG	7 cut(s)	37, 88, 141, 247, 347, 736, 818
NlaIV	GGNNCC	2 cut(s)	9, 61
NmeAIII	GCCGAG	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	118
NspI	RCATGY	1 cut(s)	247
PasI	CCCWGGG	1 cut(s)	268
PceI	AGGCCT	1 cut(s)	161
PkrI	GCNGC	3 cut(s)	21, 91, 126
PleI	GAGTC	2 cut(s)	21, 418
PpsI	GAGTC	2 cut(s)	21, 418
PpuMI	RGGWCCY	1 cut(s)	105
Psp5II	RGGWCCY	1 cut(s)	105
Psp6I	CCWGG	4 cut(s)	62, 107, 267, 649
PspGI	CCWGG	4 cut(s)	62, 107, 267, 649
PspN4I	GGNNCC	2 cut(s)	9, 61
PspPI	GGNCC	3 cut(s)	60, 105, 726
PspPPI	RGGWCCY	1 cut(s)	105
PstNI	CAGNNNCTG	1 cut(s)	108
PsuI	RGATCY	1 cut(s)	505
RsaI	GTAC	2 cut(s)	360, 746
RsaNI	GTAC	2 cut(s)	359, 745
RseI	CAYNNNNRTG	2 cut(s)	248, 644
SaqAI	TTAA	1 cut(s)	593
SatI	GCNGC	3 cut(s)	20, 90, 125
Sau3AI	GATC	3 cut(s)	205, 295, 505
Sau96I	GGNCC	3 cut(s)	60, 105, 726
SchI	GAGTC	2 cut(s)	21, 418
ScrFI	CCNGG	5 cut(s)	64, 109, 269, 651, 707
SduI	GDGCHC	4 cut(s)	12, 55, 203, 243
SfaNI	GCATC	1 cut(s)	285
SinI	GGWCC	1 cut(s)	105
SmiMI	CAYNNNNRTG	2 cut(s)	248, 644
SmlI	CTYRAG	2 cut(s)	476, 605
SmoI	CTYRAG	2 cut(s)	476, 605
Sse9I	AATT	1 cut(s)	302
SseBI	AGGCCT	1 cut(s)	161
SsiI	CCGC	4 cut(s)	5, 100, 124, 127
SspMI	CTAG	3 cut(s)	48, 398, 756
StuI	AGGCCT	1 cut(s)	161
StyD4I	CCNGG	5 cut(s)	62, 107, 267, 649, 705
StyI	CCWWGG	2 cut(s)	84, 498
TaaI	ACNGT	3 cut(s)	315, 331, 579
TaiI	ACGT	1 cut(s)	371
TaqI	TCGA	2 cut(s)	113, 289
TasI	AATT	1 cut(s)	302
TatI	WGTACW	1 cut(s)	744
TauI	GCSGC	1 cut(s)	127
Tru1I	TTAA	1 cut(s)	593
Tru9I	TTAA	1 cut(s)	593
TscAI	CASTG	2 cut(s)	138, 320
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	2 cut(s)	19, 89
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	3 cut(s)	170, 269, 721
TspRI	CASTG	2 cut(s)	138, 320
VpaK11BI	GGWCC	1 cut(s)	105
XceI	RCATGY	1 cut(s)	247
XmiI	GTMKAC	1 cut(s)	588
XspI	CTAG	3 cut(s)	48, 398, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.