Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006829.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

17757 .. 18269

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

atgctcctcatgaagttccccatgcccaaaggcacaggctgtgaccctcaagatgacaaggcaaaatatgtccaaaaggagcctgtcaacacagaaacatctttgagcgttatcagcatctctgacaagcaccctgagcggatggtctacatcgatcctcagctggccctagaagtagcggcggaactcacacaattcctacgtgacaacgccgccgtctttgcatggtcctactctgatatgcatggcatctcccctaagatcatcatacataggttgagcatcaaaccatccttctaccctgttaaacagcggcggagggccttcgatgaagaaagatatcgtgctataggggaagaggtagccaagctccagggcagccgatttatccgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

131

Amino Acids

15.09

Weight (kDa)

9.04

Isoelectric Point (pI)

50.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	139
AccI	GTMKAC	1 cut(s)	147
AciI	CCGC	7 cut(s)	139, 179, 182, 213, 313, 316, 391
AclWI	GGATC	1 cut(s)	149
AjnI	CCWGG	1 cut(s)	372
AluBI	AGCT	2 cut(s)	163, 370
AluI	AGCT	2 cut(s)	163, 370
AlwI	GGATC	1 cut(s)	149
AoxI	GGCC	2 cut(s)	165, 321
ApeKI	GCWGC	1 cut(s)	378
AspS9I	GGNCC	3 cut(s)	166, 228, 321
AvaII	GGWCC	1 cut(s)	228
BbvCI	CCTCAGC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	390
BccI	CCATC	2 cut(s)	136, 298
BceAI	ACGGC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	374
BfaI	CTAG	2 cut(s)	170, 394
BfmI	CTRYAG	1 cut(s)	348
BisI	GCNGC	4 cut(s)	180, 213, 314, 379
BlsI	GCNGC	4 cut(s)	181, 214, 315, 380
Bme1390I	CCNGG	1 cut(s)	374
Bme18I	GGWCC	1 cut(s)	228
BmgT120I	GGNCC	3 cut(s)	166, 228, 321
BmiI	GGNNCC	1 cut(s)	81
BmrFI	CCNGG	1 cut(s)	374
BmsI	GCATC	3 cut(s)	126, 258, 291
BpmI	CTGGAG	1 cut(s)	356
Bpu10I	CCTNAGC	2 cut(s)	135, 159
BpuEI	CTTGAG	1 cut(s)	33
Bsa29I	ATCGAT	1 cut(s)	153
BsaAI	YACGTR	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	373
BseBI	CCWGG	1 cut(s)	374
BseCI	ATCGAT	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	373
BseGI	GGATG	2 cut(s)	147, 290
BseMII	CTCAG	2 cut(s)	126, 173
BseXI	GCAGC	1 cut(s)	390
BshFI	GGCC	2 cut(s)	167, 323
BshVI	ATCGAT	1 cut(s)	153
BsnI	GGCC	2 cut(s)	167, 323
Bsp143I	GATC	2 cut(s)	154, 261
BspACI	CCGC	7 cut(s)	139, 179, 182, 213, 313, 316, 391
BspANI	GGCC	2 cut(s)	167, 323
BspCNI	CTCAG	2 cut(s)	127, 172
BspDI	ATCGAT	1 cut(s)	153
BspHI	TCATGA	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	81
BspPI	GGATC	1 cut(s)	149
BsrBI	CCGCTC	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	373
BssMI	GATC	2 cut(s)	154, 261
Bst2UI	CCWGG	1 cut(s)	374
Bst6I	CTCTTC	1 cut(s)	351
BstBAI	YACGTR	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	3 cut(s)	135, 159, 258
BstF5I	GGATG	2 cut(s)	147, 290
BstKTI	GATC	2 cut(s)	157, 264
BstMBI	GATC	2 cut(s)	154, 261
BstMWI	GCNNNNNNNGC	3 cut(s)	114, 136, 221
BstNI	CCWGG	1 cut(s)	374
BstSCI	CCNGG	1 cut(s)	372
BstSFI	CTRYAG	1 cut(s)	348
BstV1I	GCAGC	1 cut(s)	390
Bsu15I	ATCGAT	1 cut(s)	153
BsuRI	GGCC	2 cut(s)	167, 323
BsuTUI	ATCGAT	1 cut(s)	153
BtsCI	GGATG	2 cut(s)	147, 290
Cac8I	GCNNGC	1 cut(s)	165
CciI	TCATGA	1 cut(s)	9
Cfr13I	GGNCC	3 cut(s)	166, 228, 321
ClaI	ATCGAT	1 cut(s)	153
CviAII	CATG	4 cut(s)	10, 22, 225, 245
CviJI	RGCY	8 cut(s)	39, 82, 163, 167, 323, 365, 370, 381
CviKI_1	RGCY	8 cut(s)	39, 82, 163, 167, 323, 365, 370, 381
DdeI	CTNAG	3 cut(s)	135, 159, 258
DpnI	GATC	2 cut(s)	156, 263
DpnII	GATC	2 cut(s)	154, 261
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
EciI	GGCGGA	2 cut(s)	197, 331
Eco32I	GATATC	1 cut(s)	341
Eco47I	GGWCC	1 cut(s)	228
EcoO109I	RGGNCCY	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	372
EcoRV	GATATC	1 cut(s)	341
EcoT22I	ATGCAT	1 cut(s)	246
FaeI	CATG	4 cut(s)	13, 25, 228, 248
FaiI	YATR	9 cut(s)	11, 23, 69, 226, 242, 246, 269, 273, 350
FatI	CATG	4 cut(s)	9, 21, 224, 244
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	4 cut(s)	180, 213, 314, 379
FokI	GGATG	2 cut(s)	154, 277
Fsp4HI	GCNGC	4 cut(s)	180, 213, 314, 379
FspBI	CTAG	2 cut(s)	170, 394
GluI	GCNGC	4 cut(s)	180, 213, 314, 379
GsuI	CTGGAG	1 cut(s)	356
HaeIII	GGCC	2 cut(s)	167, 323
Hin1II	CATG	4 cut(s)	13, 25, 228, 248
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
Hpy166II	GTNNAC	2 cut(s)	88, 148
Hpy188I	TCNGA	2 cut(s)	124, 238
Hpy188III	TCNNGA	2 cut(s)	10, 50
Hpy8I	GTNNAC	2 cut(s)	88, 148
HpyAV	CCTTC	2 cut(s)	304, 334
HpyCH4IV	ACGT	1 cut(s)	202
HpyCH4V	TGCA	2 cut(s)	224, 244
HpyF10VI	GCNNNNNNNGC	3 cut(s)	114, 136, 221
HpyF3I	CTNAG	3 cut(s)	135, 159, 258
HpySE526I	ACGT	1 cut(s)	202
Hsp92II	CATG	4 cut(s)	13, 25, 228, 248
Kzo9I	GATC	2 cut(s)	154, 261
LmnI	GCTCC	3 cut(s)	9, 79, 375
LpnPI	CCDG	7 cut(s)	21, 96, 147, 149, 315, 359, 386
Lsp1109I	GCAGC	1 cut(s)	390
LweI	GCATC	3 cut(s)	126, 258, 291
MaeI	CTAG	2 cut(s)	170, 394
MaeII	ACGT	1 cut(s)	202
MaeIII	GTNAC	2 cut(s)	41, 203
MalI	GATC	2 cut(s)	156, 263
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	2 cut(s)	154, 261
MboII	GAAGA	2 cut(s)	344, 368
MluCI	AATT	1 cut(s)	194
MnlI	CCTC	5 cut(s)	17, 57, 168, 312, 352
Mph1103I	ATGCAT	1 cut(s)	246
MseI	TTAA	1 cut(s)	306
MspA1I	CMGCKG	2 cut(s)	163, 313
MspR9I	CCNGG	1 cut(s)	374
MvaI	CCWGG	1 cut(s)	374
MwoI	GCNNNNNNNGC	3 cut(s)	114, 136, 221
NdeII	GATC	2 cut(s)	154, 261
NlaIII	CATG	4 cut(s)	13, 25, 228, 248
NlaIV	GGNNCC	1 cut(s)	81
NmuCI	GTSAC	2 cut(s)	41, 203
NsiI	ATGCAT	1 cut(s)	246
PagI	TCATGA	1 cut(s)	9
PkrI	GCNGC	4 cut(s)	181, 214, 315, 380
Ppu21I	YACGTR	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	81
PspPI	GGNCC	3 cut(s)	166, 228, 321
PvuII	CAGCTG	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	4 cut(s)	180, 213, 314, 379
Sau3AI	GATC	2 cut(s)	154, 261
Sau96I	GGNCC	3 cut(s)	166, 228, 321
ScrFI	CCNGG	1 cut(s)	374
SetI	ASST	5 cut(s)	165, 205, 278, 363, 372
SfaNI	GCATC	3 cut(s)	126, 258, 291
SfcI	CTRYAG	1 cut(s)	348
SinI	GGWCC	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	48
SmoI	CTYRAG	1 cut(s)	48
Sse9I	AATT	1 cut(s)	194
SsiI	CCGC	7 cut(s)	139, 179, 182, 213, 313, 316, 391
SspMI	CTAG	2 cut(s)	170, 394
StyD4I	CCNGG	1 cut(s)	372
TaiI	ACGT	1 cut(s)	205
TaqI	TCGA	2 cut(s)	153, 327
TasI	AATT	1 cut(s)	194
TauI	GCSGC	3 cut(s)	182, 215, 316
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TseFI	GTSAC	2 cut(s)	41, 203
TseI	GCWGC	1 cut(s)	378
Tsp45I	GTSAC	2 cut(s)	41, 203
TspDTI	ATGAA	2 cut(s)	26, 345
VpaK11BI	GGWCC	1 cut(s)	228
XmiI	GTMKAC	1 cut(s)	147
XspI	CTAG	2 cut(s)	170, 394
Zsp2I	ATGCAT	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.