Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006853.1

Orthogroup ID

OG0031380

Physical Location & Seq

Genomic Coordinates Reverse (-)

11318 .. 11776

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atggtggtgttcgacaaggacgcaacctcatcctcccaaaccctccctcctttcccacgcgaggacacgcctctcctcggaaaacgctcccatctctcctcacagtccaagacattcgccaacgtcttcatcgccatcgtcggctccggcgtgctgggcctcccctacaccttcaagaagaccggatgggttttcggctctgttatgctcttctctgtggcttttcttacctaccactgtatgatgcttctggtcaaaacccgccggaggctcgagtccgatatggccctctccaaggtcaactctttcggcgatctggcctttgccgtttgcggcccagttggtcgatttgcggttgatgtcagcatcgtgctggctcaggctgggttctgcgttagttacatgattttcatatcgaatagtttagcatatgtgttcaactattctggacctgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015173 GO:0015175 GO:0015318 GO:0015711 GO:0015801 GO:0015804 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

152

Amino Acids

16.6

Weight (kDa)

9.1

Isoelectric Point (pI)

41.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	34 - 147	1e-28	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0031380)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006853.1_g000003 Rmu_sc0017953.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	60
AciI	CCGC	3 cut(s)	262, 333, 353
AfiI	CCNNNNNNNGG	4 cut(s)	61, 77, 267, 295
AgsI	TTSAA	2 cut(s)	175, 439
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	4 cut(s)	157, 285, 318, 334
AspS9I	GGNCC	4 cut(s)	157, 286, 335, 449
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	449
BbsI	GAAGAC	2 cut(s)	118, 185
BccI	CCATC	3 cut(s)	99, 143, 180
BceAI	ACGGC	1 cut(s)	311
BisI	GCNGC	1 cut(s)	334
BlsI	GCNGC	1 cut(s)	335
Bme18I	GGWCC	1 cut(s)	449
BmeT110I	CYCGRG	1 cut(s)	272
BmgT120I	GGNCC	4 cut(s)	157, 286, 335, 449
BmiI	GGNNCC	1 cut(s)	145
BmrI	ACTGGG	1 cut(s)	332
BmsI	GCATC	2 cut(s)	234, 375
BmuI	ACTGGG	1 cut(s)	332
BpiI	GAAGAC	2 cut(s)	118, 185
Bpu10I	CCTNAGC	1 cut(s)	378
BsaJI	CCNNGG	2 cut(s)	76, 294
BsaWI	WCCGGW	1 cut(s)	182
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 77, 267, 295
Bse1I	ACTGG	1 cut(s)	338
BseDI	CCNNGG	2 cut(s)	76, 294
BseGI	GGATG	2 cut(s)	29, 191
BseLI	CCNNNNNNNGG	4 cut(s)	61, 77, 267, 295
BseMII	CTCAG	1 cut(s)	392
BseNI	ACTGG	1 cut(s)	338
BseRI	GAGGAG	2 cut(s)	65, 88
BseYI	CCCAGC	2 cut(s)	154, 383
Bsh1236I	CGCG	1 cut(s)	60
BshFI	GGCC	4 cut(s)	159, 287, 320, 336
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	3 cut(s)	147, 183, 265
BslI	CCNNNNNNNGG	4 cut(s)	61, 77, 267, 295
BsnI	GGCC	4 cut(s)	159, 287, 320, 336
BsoBI	CYCGRG	1 cut(s)	272
Bsp143I	GATC	1 cut(s)	313
BspACI	CCGC	3 cut(s)	262, 333, 353
BspANI	GGCC	4 cut(s)	159, 287, 320, 336
BspCNI	CTCAG	1 cut(s)	391
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	145
BspQI	GCTCTTC	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	338
BssECI	CCNNGG	2 cut(s)	76, 294
BssMI	GATC	1 cut(s)	313
BssT1I	CCWWGG	1 cut(s)	294
Bst4CI	ACNGT	2 cut(s)	105, 239
Bst6I	CTCTTC	1 cut(s)	215
BstC8I	GCNNGC	2 cut(s)	152, 375
BstDEI	CTNAG	1 cut(s)	378
BstENI	CCTNNNNNAGG	1 cut(s)	293
BstF5I	GGATG	2 cut(s)	29, 191
BstFNI	CGCG	1 cut(s)	60
BstKTI	GATC	1 cut(s)	316
BstMBI	GATC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BstUI	CGCG	1 cut(s)	60
BstV2I	GAAGAC	2 cut(s)	118, 185
BsuRI	GGCC	4 cut(s)	159, 287, 320, 336
BtgZI	GCGATG	1 cut(s)	115
BtsCI	GGATG	2 cut(s)	29, 191
BtsIMutI	CAGTG	1 cut(s)	235
Cac8I	GCNNGC	2 cut(s)	152, 375
Cfr13I	GGNCC	4 cut(s)	157, 286, 335, 449
CseI	GACGC	1 cut(s)	29
CviAII	CATG	1 cut(s)	403
DdeI	CTNAG	1 cut(s)	378
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
Eco130I	CCWWGG	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	449
Eco88I	CYCGRG	1 cut(s)	272
EcoNI	CCTNNNNNAGG	1 cut(s)	293
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	1 cut(s)	406
FaiI	YATR	7 cut(s)	206, 242, 284, 404, 413, 430, 432
FatI	CATG	1 cut(s)	402
FauI	CCCGC	1 cut(s)	269
FauNDI	CATATG	1 cut(s)	430
Fnu4HI	GCNGC	1 cut(s)	334
FokI	GGATG	2 cut(s)	16, 198
Fsp4HI	GCNGC	1 cut(s)	334
GluI	GCNGC	1 cut(s)	334
GsaI	CCCAGC	2 cut(s)	158, 387
HaeIII	GGCC	4 cut(s)	159, 287, 320, 336
HapII	CCGG	3 cut(s)	147, 183, 265
HgaI	GACGC	1 cut(s)	29
Hin1II	CATG	1 cut(s)	406
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	1 cut(s)	275
HpaII	CCGG	3 cut(s)	147, 183, 265
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	2 cut(s)	80, 280
Hpy188III	TCNNGA	2 cut(s)	175, 447
Hpy8I	GTNNAC	1 cut(s)	301
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	1 cut(s)	181
HpyCH4III	ACNGT	2 cut(s)	105, 239
HpyCH4IV	ACGT	1 cut(s)	123
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
HpyF3I	CTNAG	1 cut(s)	378
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	406
Kzo9I	GATC	1 cut(s)	313
LguI	GCTCTTC	1 cut(s)	215
LmnI	GCTCC	2 cut(s)	92, 149
LweI	GCATC	2 cut(s)	234, 375
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	398
MalI	GATC	1 cut(s)	315
MboI	GATC	1 cut(s)	313
MboII	GAAGA	3 cut(s)	118, 190, 202
MlyI	GAGTC	1 cut(s)	284
MspI	CCGG	3 cut(s)	147, 183, 265
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	1 cut(s)	156
NdeI	CATATG	1 cut(s)	430
NdeII	GATC	1 cut(s)	313
NlaIII	CATG	1 cut(s)	406
NlaIV	GGNNCC	1 cut(s)	145
PaeR7I	CTCGAG	1 cut(s)	272
PciSI	GCTCTTC	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PkrI	GCNGC	1 cut(s)	335
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
PspFI	CCCAGC	2 cut(s)	154, 383
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	4 cut(s)	157, 286, 335, 449
PspXI	VCTCGAGB	1 cut(s)	272
SapI	GCTCTTC	1 cut(s)	215
SatI	GCNGC	1 cut(s)	334
Sau3AI	GATC	1 cut(s)	313
Sau96I	GGNCC	4 cut(s)	157, 286, 335, 449
SchI	GAGTC	1 cut(s)	284
SetI	ASST	6 cut(s)	29, 126, 173, 233, 300, 454
SfaNI	GCATC	2 cut(s)	234, 375
Sfr274I	CTCGAG	1 cut(s)	272
SinI	GGWCC	1 cut(s)	449
SlaI	CTCGAG	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
SsiI	CCGC	3 cut(s)	262, 333, 353
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	105, 239
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	4 cut(s)	12, 273, 346, 416
TauI	GCSGC	1 cut(s)	336
TscAI	CASTG	1 cut(s)	242
TspDTI	ATGAA	2 cut(s)	118, 400
TspRI	CASTG	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	449
XagI	CCTNNNNNAGG	1 cut(s)	293
XhoI	CTCGAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.