Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006878.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

16737 .. 16979

Gene Structure 243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

atggagaagggcagtgtggcctcagcttttcgtgtgcgtattgttgttgttgttgttgttattgtttgcttgtgtaacaaagctgttaatggcggttttgtgaagtacaacacagggagtggtgtggtggaaggcaaactaaatgttcatttggttgcgcactcccatgacgacgttggatggttgaagactgttgatcagtactatgttggatcaaacaacagcattcaggttaccaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005975 GO:0005996 GO:0006013 GO:0006464 GO:0006517 GO:0006807 GO:0008150 GO:0008152 GO:0009100 GO:0009987 GO:0015923 GO:0016787 GO:0016798 GO:0019318 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

80

Amino Acids

8.6

Weight (kDa)

9.06

Isoelectric Point (pI)

2.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_38N	PF01074	48 - 75	3e-07	Glycosyl hydrolases family 38 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	159
AciI	CCGC	1 cut(s)	93
AclWI	GGATC	1 cut(s)	220
AfaI	GTAC	2 cut(s)	107, 203
AgsI	TTSAA	1 cut(s)	187
AluBI	AGCT	2 cut(s)	26, 83
AluI	AGCT	2 cut(s)	26, 83
AlwI	GGATC	1 cut(s)	220
AoxI	GGCC	1 cut(s)	18
AspLEI	GCGC	1 cut(s)	160
BbsI	GAAGAC	1 cut(s)	194
BbvCI	CCTCAGC	1 cut(s)	22
BccI	CCATC	1 cut(s)	174
BclI	TGATCA	1 cut(s)	196
BmcAI	AGTACT	1 cut(s)	203
BpiI	GAAGAC	1 cut(s)	194
Bpu10I	CCTNAGC	1 cut(s)	22
BseGI	GGATG	1 cut(s)	185
BseMII	CTCAG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	20
BsmI	GAATGC	1 cut(s)	225
BsnI	GGCC	1 cut(s)	20
Bsp143I	GATC	2 cut(s)	196, 212
BspACI	CCGC	1 cut(s)	93
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	1 cut(s)	35
BspPI	GGATC	1 cut(s)	220
BssMI	GATC	2 cut(s)	196, 212
Bst4CI	ACNGT	1 cut(s)	193
BstDEI	CTNAG	1 cut(s)	22
BstEII	GGTNACC	1 cut(s)	232
BstF5I	GGATG	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	2 cut(s)	199, 215
BstMBI	GATC	2 cut(s)	196, 212
BstPI	GGTNACC	1 cut(s)	232
BstV2I	GAAGAC	1 cut(s)	194
BsuRI	GGCC	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	185
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	19
CfoI	GCGC	1 cut(s)	160
Csp6I	GTAC	2 cut(s)	106, 202
CviAII	CATG	1 cut(s)	167
CviJI	RGCY	3 cut(s)	20, 26, 83
CviKI_1	RGCY	3 cut(s)	20, 26, 83
CviQI	GTAC	2 cut(s)	106, 202
DdeI	CTNAG	1 cut(s)	22
DpnI	GATC	2 cut(s)	198, 214
DpnII	GATC	2 cut(s)	196, 212
Eco91I	GGTNACC	1 cut(s)	232
EcoO65I	GGTNACC	1 cut(s)	232
FaeI	CATG	1 cut(s)	170
FaiI	YATR	2 cut(s)	168, 207
FatI	CATG	1 cut(s)	166
FbaI	TGATCA	1 cut(s)	196
FokI	GGATG	1 cut(s)	192
FspI	TGCGCA	1 cut(s)	159
GlaI	GCGC	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	160
Hin1II	CATG	1 cut(s)	170
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	1 cut(s)	125
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	1 cut(s)	174
HpyF3I	CTNAG	1 cut(s)	22
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	1 cut(s)	170
HspAI	GCGC	1 cut(s)	158
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	2 cut(s)	196, 212
LpnPI	CCDG	2 cut(s)	99, 215
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	2 cut(s)	74, 232
MalI	GATC	2 cut(s)	198, 214
MboI	GATC	2 cut(s)	196, 212
MboII	GAAGA	1 cut(s)	199
MmeI	TCCRAC	2 cut(s)	157, 190
MnlI	CCTC	1 cut(s)	31
MseI	TTAA	1 cut(s)	87
MslI	CAYNNNNRTG	1 cut(s)	165
Mva1269I	GAATGC	1 cut(s)	225
NdeII	GATC	2 cut(s)	196, 212
NlaIII	CATG	1 cut(s)	170
NsbI	TGCGCA	1 cut(s)	159
PctI	GAATGC	1 cut(s)	225
PspEI	GGTNACC	1 cut(s)	232
RsaI	GTAC	2 cut(s)	107, 203
RsaNI	GTAC	2 cut(s)	106, 202
RseI	CAYNNNNRTG	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	87
Sau3AI	GATC	2 cut(s)	196, 212
ScaI	AGTACT	1 cut(s)	203
SetI	ASST	4 cut(s)	28, 85, 177, 234
SgeI	CNNG	4 cut(s)	44, 82, 126, 179
SmiMI	CAYNNNNRTG	1 cut(s)	165
SsiI	CCGC	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	1 cut(s)	177
TatI	WGTACW	2 cut(s)	105, 201
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	137
TspRI	CASTG	1 cut(s)	19
XcmI	CCANNNNNNNNNTGG	1 cut(s)	173
ZrmI	AGTACT	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.