Rmu_sc0006926.1_g000016

Ribulose bisphosphate carboxylase oxygenase activase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006926.1
N/A
Physical Location & Seq
Forward (+)
38045 .. 38771
727 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 468 bp
atgactctctgcaactcatttctcctcaaaaccccaatcttccctcactcccatttcttcactcaccaatttcccaccaaacccatcttctccctttcctgctccgcaaccccctcctcctccgtgcctgaccccaaaaccaacgccaacgacggcgacgccgccaatggcggcggtgagccgaagagcaagaggctttcggaccagtcctcgtgggaggccaaggactctgtgggcgaggactacttatacaggctcggcaaagaggccgacaacatgaacatcgccgtcggagcccgggccggcgtcgtcgatgaccttttcgtcgggaaattcctcggccgtgactccgatatcgtttttgattatcgccagaaggtcaccaggtccttccagtacctgcaaggcgattattacattgcgcctctcttcatggataaagtcggtaagttctacgaaactgggtga

Protein Analysis

155

Amino Acids

17.2

Weight (kDa)

5.88

Isoelectric Point (pI)

28.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 323
Acc36I ACCTGC 1 cut(s) 408
AciI CCGC 4 cut(s) 105, 162, 171, 174
AcoI YGGCCR 1 cut(s) 340
AcsI RAATTY 1 cut(s) 332
AcyI GRCGYC 2 cut(s) 159, 306
AfaI GTAC 1 cut(s) 398
AjnI CCWGG 1 cut(s) 383
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
AlwNI CAGNNNCTG 1 cut(s) 400
Ama87I CYCGRG 1 cut(s) 297
AoxI GGCC 4 cut(s) 219, 267, 300, 340
ApoI RAATTY 1 cut(s) 332
AspLEI GCGC 1 cut(s) 424
AspS9I GGNCC 3 cut(s) 202, 300, 387
AsuC2I CCSGG 2 cut(s) 298, 299
AsuHPI GGTGA 3 cut(s) 56, 188, 373
AvaI CYCGRG 1 cut(s) 297
AvaII GGWCC 2 cut(s) 202, 387
BanII GRGCYC 1 cut(s) 298
BauI CACGAG 1 cut(s) 211
BccI CCATC 1 cut(s) 92
BceAI ACGGC 3 cut(s) 169, 272, 327
BciT130I CCWGG 1 cut(s) 385
BcnI CCSGG 2 cut(s) 298, 299
BfuAI ACCTGC 1 cut(s) 408
BisI GCNGC 2 cut(s) 162, 172
BlsI GCNGC 2 cut(s) 163, 173
Bme1390I CCNGG 3 cut(s) 298, 299, 385
Bme18I GGWCC 2 cut(s) 202, 387
BmeT110I CYCGRG 1 cut(s) 297
BmgT120I GGNCC 3 cut(s) 202, 300, 387
BmiI GGNNCC 1 cut(s) 295
BmrFI CCNGG 3 cut(s) 298, 299, 385
BpuMI CCSGG 2 cut(s) 298, 299
BsaHI GRCGYC 2 cut(s) 159, 306
BsaJI CCNNGG 3 cut(s) 222, 297, 337
Bse118I RCCGGY 1 cut(s) 302
Bse1I ACTGG 3 cut(s) 205, 394, 466
Bse3DI GCAATG 1 cut(s) 417
BseBI CCWGG 1 cut(s) 385
BseDI CCNNGG 3 cut(s) 222, 297, 337
BseMI GCAATG 1 cut(s) 417
BseNI ACTGG 3 cut(s) 205, 394, 466
BseRI GAGGAG 3 cut(s) 14, 106, 109
BseX3I CGGCCG 1 cut(s) 340
Bsh1285I CGRYCG 1 cut(s) 343
BshFI GGCC 4 cut(s) 221, 269, 302, 342
BsiEI CGRYCG 1 cut(s) 343
BsiHKCI CYCGRG 1 cut(s) 297
BsiSI CCGG 2 cut(s) 298, 303
BsnI GGCC 4 cut(s) 221, 269, 302, 342
BsoBI CYCGRG 1 cut(s) 297
Bsp1286I GDGCHC 1 cut(s) 298
BspACI CCGC 4 cut(s) 105, 162, 171, 174
BspANI GGCC 4 cut(s) 221, 269, 302, 342
BspLI GGNNCC 1 cut(s) 295
BspMI ACCTGC 1 cut(s) 408
BspQI GCTCTTC 1 cut(s) 179
BsrDI GCAATG 1 cut(s) 417
BsrFI RCCGGY 1 cut(s) 302
BsrI ACTGG 3 cut(s) 205, 394, 466
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 3 cut(s) 222, 297, 337
BssNI GRCGYC 2 cut(s) 159, 306
BssSI CACGAG 1 cut(s) 211
BssT1I CCWWGG 1 cut(s) 222
Bst2BI CACGAG 1 cut(s) 211
Bst2UI CCWGG 1 cut(s) 385
Bst6I CTCTTC 2 cut(s) 179, 434
BstACI GRCGYC 2 cut(s) 159, 306
BstC8I GCNNGC 1 cut(s) 304
BstEII GGTNACC 1 cut(s) 379
BstHHI GCGC 1 cut(s) 424
BstMCI CGRYCG 1 cut(s) 343
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstNI CCWGG 1 cut(s) 385
BstPI GGTNACC 1 cut(s) 379
BstSCI CCNGG 3 cut(s) 296, 297, 383
BstZI CGGCCG 1 cut(s) 340
BsuRI GGCC 4 cut(s) 221, 269, 302, 342
BtgZI GCGATG 1 cut(s) 268
BveI ACCTGC 1 cut(s) 408
Cac8I GCNNGC 1 cut(s) 304
CaiI CAGNNNCTG 1 cut(s) 400
CfoI GCGC 1 cut(s) 424
Cfr10I RCCGGY 1 cut(s) 302
Cfr13I GGNCC 3 cut(s) 202, 300, 387
Cfr9I CCCGGG 1 cut(s) 297
CseI GACGC 2 cut(s) 167, 295
CsiI ACCWGGT 1 cut(s) 383
Csp6I GTAC 1 cut(s) 397
CviAII CATG 2 cut(s) 277, 433
CviJI RGCY 8 cut(s) 181, 196, 221, 256, 269, 296, 302, 342
CviKI_1 RGCY 8 cut(s) 181, 196, 221, 256, 269, 296, 302, 342
CviQI GTAC 1 cut(s) 397
DrdI GACNNNNNNGTC 1 cut(s) 323
DseDI GACNNNNNNGTC 1 cut(s) 323
EaeI YGGCCR 1 cut(s) 340
EagI CGGCCG 1 cut(s) 340
Eam1104I CTCTTC 2 cut(s) 179, 434
EarI CTCTTC 2 cut(s) 179, 434
EclXI CGGCCG 1 cut(s) 340
Eco130I CCWWGG 1 cut(s) 222
Eco24I GRGCYC 1 cut(s) 298
Eco32I GATATC 1 cut(s) 355
Eco47I GGWCC 2 cut(s) 202, 387
Eco52I CGGCCG 1 cut(s) 340
Eco88I CYCGRG 1 cut(s) 297
Eco91I GGTNACC 1 cut(s) 379
EcoO109I RGGNCCY 1 cut(s) 387
EcoO65I GGTNACC 1 cut(s) 379
EcoRII CCWGG 1 cut(s) 383
EcoRV GATATC 1 cut(s) 355
EcoT14I CCWWGG 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 298
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 2 cut(s) 280, 436
FaiI YATR 3 cut(s) 250, 278, 434
FatI CATG 2 cut(s) 276, 432
Fnu4HI GCNGC 2 cut(s) 162, 172
FriOI GRGCYC 1 cut(s) 298
Fsp4HI GCNGC 2 cut(s) 162, 172
GlaI GCGC 1 cut(s) 423
GluI GCNGC 2 cut(s) 162, 172
HaeIII GGCC 4 cut(s) 221, 269, 302, 342
HapII CCGG 2 cut(s) 298, 303
HgaI GACGC 2 cut(s) 167, 295
HhaI GCGC 1 cut(s) 424
Hin1I GRCGYC 2 cut(s) 159, 306
Hin1II CATG 2 cut(s) 280, 436
Hin6I GCGC 1 cut(s) 422
HinP1I GCGC 1 cut(s) 422
HinfI GANTC 3 cut(s) 4, 227, 347
HpaII CCGG 2 cut(s) 298, 303
HphI GGTGA 3 cut(s) 56, 188, 373
Hpy188I TCNGA 3 cut(s) 202, 293, 352
Hpy188III TCNNGA 1 cut(s) 328
Hpy99I CGWCG 6 cut(s) 155, 161, 293, 311, 314, 329
HpyAV CCTTC 2 cut(s) 370, 400
HpyCH4V TGCA 2 cut(s) 12, 403
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
Hsp92I GRCGYC 2 cut(s) 159, 306
Hsp92II CATG 2 cut(s) 280, 436
HspAI GCGC 1 cut(s) 422
KroI GCCGGC 1 cut(s) 302
KroNI GCCGGC 1 cut(s) 304
LguI GCTCTTC 1 cut(s) 179
LmnI GCTCC 2 cut(s) 107, 293
MabI ACCWGGT 1 cut(s) 383
MaeIII GTNAC 2 cut(s) 344, 379
MboII GAAGA 5 cut(s) 31, 49, 79, 196, 421
MhlI GDGCHC 1 cut(s) 298
MluCI AATT 2 cut(s) 68, 332
MlyI GAGTC 2 cut(s) 221, 341
MmeI TCCRAC 1 cut(s) 271
MroNI GCCGGC 1 cut(s) 302
MspI CCGG 2 cut(s) 298, 303
MspR9I CCNGG 3 cut(s) 298, 299, 385
MvaI CCWGG 1 cut(s) 385
MwoI GCNNNNNNNGC 1 cut(s) 293
NaeI GCCGGC 1 cut(s) 304
NciI CCSGG 2 cut(s) 298, 299
NgoMIV GCCGGC 1 cut(s) 302
NlaIII CATG 2 cut(s) 280, 436
NlaIV GGNNCC 1 cut(s) 295
NmeAIII GCCGAG 2 cut(s) 237, 318
NmuCI GTSAC 2 cut(s) 344, 379
PciSI GCTCTTC 1 cut(s) 179
PdiI GCCGGC 1 cut(s) 304
PkrI GCNGC 2 cut(s) 163, 173
PleI GAGTC 2 cut(s) 221, 341
PpsI GAGTC 2 cut(s) 221, 341
PpuMI RGGWCCY 1 cut(s) 387
Psp5II RGGWCCY 1 cut(s) 387
Psp6I CCWGG 1 cut(s) 383
PspEI GGTNACC 1 cut(s) 379
PspGI CCWGG 1 cut(s) 383
PspN4I GGNNCC 1 cut(s) 295
PspPI GGNCC 3 cut(s) 202, 300, 387
PspPPI RGGWCCY 1 cut(s) 387
PstNI CAGNNNCTG 1 cut(s) 400
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
SapI GCTCTTC 1 cut(s) 179
SatI GCNGC 2 cut(s) 162, 172
Sau96I GGNCC 3 cut(s) 202, 300, 387
SchI GAGTC 2 cut(s) 221, 341
ScrFI CCNGG 3 cut(s) 298, 299, 385
SduI GDGCHC 1 cut(s) 298
SetI ASST 4 cut(s) 321, 381, 389, 402
SexAI ACCWGGT 1 cut(s) 383
SinI GGWCC 2 cut(s) 202, 387
SmaI CCCGGG 1 cut(s) 299
SrfI GCCCGGGC 1 cut(s) 299
Sse9I AATT 2 cut(s) 68, 332
SsiI CCGC 4 cut(s) 105, 162, 171, 174
StyD4I CCNGG 3 cut(s) 296, 297, 383
StyI CCWWGG 1 cut(s) 222
TaqI TCGA 1 cut(s) 312
TasI AATT 2 cut(s) 68, 332
TauI GCSGC 2 cut(s) 164, 174
TseFI GTSAC 2 cut(s) 344, 379
Tsp45I GTSAC 2 cut(s) 344, 379
TspDTI ATGAA 2 cut(s) 293, 421
TspGWI ACGGA 1 cut(s) 112
TspMI CCCGGG 1 cut(s) 297
VpaK11BI GGWCC 2 cut(s) 202, 387
XapI RAATTY 1 cut(s) 332
XcmI CCANNNNNNNNNTGG 1 cut(s) 229
XmaI CCCGGG 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.