Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006928.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

528 .. 839

Gene Structure 312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

atggcttacaggtccctagccgtgggcgtgaattggggcacgacggcctcgcacccattgccgccggccaaggtcgtcgagctcttgaaatcaaacaacattaccagagtgaagctgttcgacgcagacccacttgttcttgaagcgctttctgggtccaatctgggcgtcactgttgggattcctaatgggttgcttagaagcttgaactcgtccaagaaggctgcacagagttgggtccatgacaatgtcactcgctatgtttctagtggtgacagccgcgtcaaaatcgagtatgatcgcttttcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

103

Amino Acids

11.15

Weight (kDa)

9.69

Isoelectric Point (pI)

33.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	8 - 89	2.5e-16	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	281
AccII	CGCG	1 cut(s)	282
AciI	CCGC	2 cut(s)	62, 280
AcoI	YGGCCR	1 cut(s)	66
AcyI	GRCGYC	1 cut(s)	168
AfeI	AGCGCT	1 cut(s)	147
AfiI	CCNNNNNNNGG	1 cut(s)	22
AgsI	TTSAA	3 cut(s)	88, 143, 208
AluBI	AGCT	3 cut(s)	82, 115, 204
AluI	AGCT	3 cut(s)	82, 115, 204
Alw21I	GWGCWC	1 cut(s)	84
Aor51HI	AGCGCT	1 cut(s)	147
AoxI	GGCC	2 cut(s)	45, 66
ApeKI	GCWGC	1 cut(s)	224
Asp700I	GAANNNNTTC	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	148
AspS9I	GGNCC	3 cut(s)	12, 156, 238
AsuHPI	GGTGA	1 cut(s)	284
AvaII	GGWCC	3 cut(s)	12, 156, 238
BaeGI	GKGCMC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	211
BceAI	ACGGC	2 cut(s)	5, 60
BfaI	CTAG	2 cut(s)	17, 267
BfoI	RGCGCY	1 cut(s)	149
BisI	GCNGC	3 cut(s)	62, 225, 280
BlsI	GCNGC	3 cut(s)	63, 226, 281
Bme18I	GGWCC	3 cut(s)	12, 156, 238
BmgT120I	GGNCC	3 cut(s)	12, 156, 238
BmiI	GGNNCC	3 cut(s)	14, 157, 239
BsaHI	GRCGYC	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	21, 69
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse118I	RCCGGY	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	56
BseDI	CCNNGG	2 cut(s)	21, 69
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseMI	GCAATG	1 cut(s)	56
BseSI	GKGCMC	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	211
BsgI	GTGCAG	1 cut(s)	210
Bsh1236I	CGCG	1 cut(s)	282
BshFI	GGCC	2 cut(s)	47, 68
BsiHKAI	GWGCWC	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	22
BsnI	GGCC	2 cut(s)	47, 68
Bsp1286I	GDGCHC	2 cut(s)	41, 84
Bsp143I	GATC	1 cut(s)	298
BspACI	CCGC	2 cut(s)	62, 280
BspANI	GGCC	2 cut(s)	47, 68
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	3 cut(s)	14, 157, 239
BsrDI	GCAATG	1 cut(s)	56
BsrFI	RCCGGY	1 cut(s)	64
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	2 cut(s)	21, 69
BssMI	GATC	1 cut(s)	298
BssNI	GRCGYC	1 cut(s)	168
BssT1I	CCWWGG	1 cut(s)	69
Bst4CI	ACNGT	1 cut(s)	175
BstACI	GRCGYC	1 cut(s)	168
BstAPI	GCANNNNNTGC	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	1 cut(s)	197
BstDSI	CCRYGG	1 cut(s)	21
BstFNI	CGCG	1 cut(s)	282
BstH2I	RGCGCY	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	1 cut(s)	301
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstSLI	GKGCMC	1 cut(s)	41
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	47, 68
BtgI	CCRYGG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	1 cut(s)	66
CfoI	GCGC	1 cut(s)	148
Cfr10I	RCCGGY	1 cut(s)	64
Cfr13I	GGNCC	3 cut(s)	12, 156, 238
CseI	GACGC	3 cut(s)	131, 157, 271
CviAII	CATG	1 cut(s)	242
CviJI	RGCY	9 cut(s)	5, 20, 47, 68, 82, 115, 204, 224, 279
CviKI_1	RGCY	9 cut(s)	5, 20, 47, 68, 82, 115, 204, 224, 279
DdeI	CTNAG	1 cut(s)	197
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
DrdI	GACNNNNNNGTC	1 cut(s)	281
DseDI	GACNNNNNNGTC	1 cut(s)	281
EaeI	YGGCCR	1 cut(s)	66
Ecl136II	GAGCTC	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	84
Eco47I	GGWCC	3 cut(s)	12, 156, 238
Eco47III	AGCGCT	1 cut(s)	147
Eco53kI	GAGCTC	1 cut(s)	82
EcoICRI	GAGCTC	1 cut(s)	82
EcoO109I	RGGNCCY	1 cut(s)	12
EcoT14I	CCWWGG	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	1 cut(s)	245
FaiI	YATR	4 cut(s)	243, 261, 297, 310
FatI	CATG	1 cut(s)	241
Fnu4HI	GCNGC	3 cut(s)	62, 225, 280
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	3 cut(s)	62, 225, 280
FspBI	CTAG	2 cut(s)	17, 267
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	3 cut(s)	62, 225, 280
HaeII	RGCGCY	1 cut(s)	149
HaeIII	GGCC	2 cut(s)	47, 68
HapII	CCGG	1 cut(s)	65
HgaI	GACGC	3 cut(s)	131, 157, 271
HhaI	GCGC	1 cut(s)	148
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	1 cut(s)	245
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HindIII	AAGCTT	1 cut(s)	202
HinfI	GANTC	1 cut(s)	181
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	1 cut(s)	284
Hpy188III	TCNNGA	2 cut(s)	85, 140
Hpy99I	CGWCG	3 cut(s)	46, 80, 125
HpyAV	CCTTC	1 cut(s)	214
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4V	TGCA	1 cut(s)	227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	1 cut(s)	197
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	1 cut(s)	245
HspAI	GCGC	1 cut(s)	146
KroI	GCCGGC	1 cut(s)	64
KroNI	GCCGGC	1 cut(s)	66
Kzo9I	GATC	1 cut(s)	298
LpnPI	CCDG	4 cut(s)	78, 118, 138, 149
Lsp1109I	GCAGC	1 cut(s)	211
MaeI	CTAG	2 cut(s)	17, 267
MaeIII	GTNAC	3 cut(s)	169, 250, 272
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MhlI	GDGCHC	2 cut(s)	41, 84
MluCI	AATT	1 cut(s)	31
MnlI	CCTC	1 cut(s)	58
MroNI	GCCGGC	1 cut(s)	64
MroXI	GAANNNNTTC	1 cut(s)	116
MslI	CAYNNNNRTG	1 cut(s)	246
MspI	CCGG	1 cut(s)	65
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	1 cut(s)	58
NaeI	GCCGGC	1 cut(s)	66
NdeII	GATC	1 cut(s)	298
NgoMIV	GCCGGC	1 cut(s)	64
NlaIII	CATG	1 cut(s)	245
NlaIV	GGNNCC	3 cut(s)	14, 157, 239
NmuCI	GTSAC	3 cut(s)	169, 250, 272
PdiI	GCCGGC	1 cut(s)	66
PdmI	GAANNNNTTC	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	181
PflFI	GACNNNGTC	1 cut(s)	248
PkrI	GCNGC	3 cut(s)	63, 226, 281
PpuMI	RGGWCCY	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	84
Psp5II	RGGWCCY	1 cut(s)	12
PspN4I	GGNNCC	3 cut(s)	14, 157, 239
PspPI	GGNCC	3 cut(s)	12, 156, 238
PspPPI	RGGWCCY	1 cut(s)	12
PsyI	GACNNNGTC	1 cut(s)	248
RseI	CAYNNNNRTG	1 cut(s)	246
SacI	GAGCTC	1 cut(s)	84
SatI	GCNGC	3 cut(s)	62, 225, 280
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	3 cut(s)	12, 156, 238
SduI	GDGCHC	2 cut(s)	41, 84
SetI	ASST	5 cut(s)	14, 75, 84, 117, 206
SinI	GGWCC	3 cut(s)	12, 156, 238
SmiMI	CAYNNNNRTG	1 cut(s)	246
Sse9I	AATT	1 cut(s)	31
SsiI	CCGC	2 cut(s)	62, 280
SspMI	CTAG	2 cut(s)	17, 267
SstI	GAGCTC	1 cut(s)	84
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	175
TaqI	TCGA	3 cut(s)	78, 120, 291
TasI	AATT	1 cut(s)	31
TauI	GCSGC	2 cut(s)	64, 282
TfiI	GAWTC	1 cut(s)	181
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	3 cut(s)	169, 250, 272
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	3 cut(s)	169, 250, 272
TspDTI	ATGAA	1 cut(s)	297
TspRI	CASTG	1 cut(s)	178
Tth111I	GACNNNGTC	1 cut(s)	248
VpaK11BI	GGWCC	3 cut(s)	12, 156, 238
XmnI	GAANNNNTTC	1 cut(s)	116
XspI	CTAG	2 cut(s)	17, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.