Rmu_sc0006959.1_g000016

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006959.1
N/A
Physical Location & Seq
Reverse (-)
54299 .. 54864
566 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 471 bp
atgtttcgcaatgcctggagagtgaatggatcgttgcgggttgaagaagcagagggacaaagggttctctttactttgtctgacgcagcagatagggatcgaatctggaagggagctccttgggggtataaccatgcatcggttgccctagcctattatgatggtgttgctacaatcgaatttgtctcccttacgaagtcttcgtactggatcacattgcagggcagccctcctgcatttcggtctgagagggtgatgacaatgattggtttcactcttggtgatttcaaggagattgataaacaggccaagaaagttagaaatcttcgcatcagggtggaaatacctttcaataggccgctctctttcaaacgctggcctaccttgttcgagcctccattggaggaagatgatgtgactgagcgcacggtgttgggtgtatccctggcggctacggcatctgcatcgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

156

Amino Acids

17.7

Weight (kDa)

9.0

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 361
AciI CCGC 3 cut(s) 37, 359, 449
AclWI GGATC 3 cut(s) 37, 105, 218
AcsI RAATTY 1 cut(s) 179
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 4 cut(s) 44, 289, 352, 370
AjnI CCWGG 2 cut(s) 14, 444
AloI GAACNNNNNNTCC 2 cut(s) 48, 80
AluBI AGCT 1 cut(s) 116
AluI AGCT 1 cut(s) 116
Alw21I GWGCWC 1 cut(s) 118
Alw26I GTCTC 1 cut(s) 190
AlwI GGATC 3 cut(s) 37, 105, 218
AoxI GGCC 3 cut(s) 306, 356, 377
ApeKI GCWGC 2 cut(s) 86, 225
ApoI RAATTY 1 cut(s) 179
AspLEI GCGC 1 cut(s) 426
AsuHPI GGTGA 2 cut(s) 265, 293
BanII GRGCYC 1 cut(s) 118
BarI GAAGNNNNNNTAC 2 cut(s) 188, 220
BbsI GAAGAC 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 118
BbvI GCAGC 2 cut(s) 98, 237
BccI CCATC 1 cut(s) 155
BcgI CGANNNNNNTGC 1 cut(s) 447
BciT130I CCWGG 2 cut(s) 16, 446
BciVI GTATCC 1 cut(s) 451
BcoDI GTCTC 1 cut(s) 190
BfaI CTAG 1 cut(s) 149
BfuI GTATCC 1 cut(s) 451
BisI GCNGC 4 cut(s) 87, 226, 359, 450
BlsI GCNGC 4 cut(s) 88, 227, 360, 451
Bme1390I CCNGG 2 cut(s) 16, 446
BmrFI CCNGG 2 cut(s) 16, 446
BmsI GCATC 3 cut(s) 146, 339, 467
BpiI GAAGAC 1 cut(s) 192
BpmI CTGGAG 1 cut(s) 37
BsaBI GATNNNNATC 1 cut(s) 96
BsaJI CCNNGG 2 cut(s) 119, 444
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse1I ACTGG 1 cut(s) 212
Bse3DI GCAATG 2 cut(s) 16, 215
Bse8I GATNNNNATC 1 cut(s) 96
BseBI CCWGG 2 cut(s) 16, 446
BseDI CCNNGG 2 cut(s) 119, 444
BseJI GATNNNNATC 1 cut(s) 96
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMI GCAATG 2 cut(s) 16, 215
BseMII CTCAG 2 cut(s) 237, 411
BseNI ACTGG 1 cut(s) 212
BseXI GCAGC 2 cut(s) 98, 237
BshFI GGCC 3 cut(s) 308, 358, 379
BsiHKAI GWGCWC 1 cut(s) 118
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 1 cut(s) 190
BsmFI GGGAC 1 cut(s) 69
BsnI GGCC 3 cut(s) 308, 358, 379
Bsp1286I GDGCHC 1 cut(s) 118
Bsp143I GATC 3 cut(s) 29, 97, 210
BspACI CCGC 3 cut(s) 37, 359, 449
BspANI GGCC 3 cut(s) 308, 358, 379
BspCNI CTCAG 2 cut(s) 238, 412
BspPI GGATC 3 cut(s) 37, 105, 218
BsrBI CCGCTC 1 cut(s) 361
BsrDI GCAATG 2 cut(s) 16, 215
BsrI ACTGG 1 cut(s) 212
BssECI CCNNGG 2 cut(s) 119, 444
BssMI GATC 3 cut(s) 29, 97, 210
BssT1I CCWWGG 1 cut(s) 119
Bst2UI CCWGG 2 cut(s) 16, 446
Bst4CI ACNGT 1 cut(s) 430
BstAPI GCANNNNNTGC 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 377
BstDEI CTNAG 2 cut(s) 246, 420
BstHHI GCGC 1 cut(s) 426
BstKTI GATC 3 cut(s) 32, 100, 213
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 3 cut(s) 29, 97, 210
BstMWI GCNNNNNNNGC 2 cut(s) 143, 455
BstNI CCWGG 2 cut(s) 16, 446
BstSCI CCNGG 2 cut(s) 14, 444
BstV1I GCAGC 2 cut(s) 98, 237
BstV2I GAAGAC 1 cut(s) 192
BsuI GTATCC 1 cut(s) 451
BsuRI GGCC 3 cut(s) 308, 358, 379
Cac8I GCNNGC 1 cut(s) 377
CfoI GCGC 1 cut(s) 426
CseI GACGC 1 cut(s) 92
Csp6I GTAC 1 cut(s) 205
CviAII CATG 1 cut(s) 134
CviJI RGCY 8 cut(s) 116, 152, 228, 308, 358, 379, 394, 452
CviKI_1 RGCY 8 cut(s) 116, 152, 228, 308, 358, 379, 394, 452
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 2 cut(s) 246, 420
DpnI GATC 3 cut(s) 31, 99, 212
DpnII GATC 3 cut(s) 29, 97, 210
Ecl136II GAGCTC 1 cut(s) 116
Eco130I CCWWGG 1 cut(s) 119
Eco24I GRGCYC 1 cut(s) 118
Eco53kI GAGCTC 1 cut(s) 116
EcoICRI GAGCTC 1 cut(s) 116
EcoRII CCWGG 2 cut(s) 14, 444
EcoT14I CCWWGG 1 cut(s) 119
EcoT22I ATGCAT 1 cut(s) 139
EcoT38I GRGCYC 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 119
FaeI CATG 1 cut(s) 137
FaiI YATR 3 cut(s) 129, 135, 159
FaqI GGGAC 1 cut(s) 69
FatI CATG 1 cut(s) 133
FauI CCCGC 1 cut(s) 30
Fnu4HI GCNGC 4 cut(s) 87, 226, 359, 450
FriOI GRGCYC 1 cut(s) 118
Fsp4HI GCNGC 4 cut(s) 87, 226, 359, 450
FspBI CTAG 1 cut(s) 149
GlaI GCGC 1 cut(s) 425
GluI GCNGC 4 cut(s) 87, 226, 359, 450
GsuI CTGGAG 1 cut(s) 37
HaeIII GGCC 3 cut(s) 308, 358, 379
HgaI GACGC 1 cut(s) 92
HhaI GCGC 1 cut(s) 426
Hin1II CATG 1 cut(s) 137
Hin6I GCGC 1 cut(s) 424
HinP1I GCGC 1 cut(s) 424
HinfI GANTC 1 cut(s) 102
HphI GGTGA 2 cut(s) 265, 293
Hpy188I TCNGA 2 cut(s) 82, 247
Hpy188III TCNNGA 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 430
HpyCH4V TGCA 4 cut(s) 137, 220, 236, 464
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 455
HpyF3I CTNAG 2 cut(s) 246, 420
Hsp92II CATG 1 cut(s) 137
HspAI GCGC 1 cut(s) 424
Kzo9I GATC 3 cut(s) 29, 97, 210
LmnI GCTCC 2 cut(s) 113, 121
Lsp1109I GCAGC 2 cut(s) 98, 237
LweI GCATC 3 cut(s) 146, 339, 467
MaeI CTAG 1 cut(s) 149
MaeIII GTNAC 1 cut(s) 415
MalI GATC 3 cut(s) 31, 99, 212
MbiI CCGCTC 1 cut(s) 361
MboI GATC 3 cut(s) 29, 97, 210
MboII GAAGA 4 cut(s) 56, 192, 317, 419
MhlI GDGCHC 1 cut(s) 118
MluCI AATT 1 cut(s) 179
MnlI CCTC 5 cut(s) 46, 240, 243, 397, 405
Mph1103I ATGCAT 1 cut(s) 139
MslI CAYNNNNRTG 1 cut(s) 335
MspR9I CCNGG 2 cut(s) 16, 446
MvaI CCWGG 2 cut(s) 16, 446
MwoI GCNNNNNNNGC 2 cut(s) 143, 455
NdeII GATC 3 cut(s) 29, 97, 210
NlaIII CATG 1 cut(s) 137
NmuCI GTSAC 1 cut(s) 415
NsiI ATGCAT 1 cut(s) 139
PcsI WCGNNNNNNNCGW 1 cut(s) 200
PfeI GAWTC 1 cut(s) 102
PkrI GCNGC 4 cut(s) 88, 227, 360, 451
Psp124BI GAGCTC 1 cut(s) 118
Psp6I CCWGG 2 cut(s) 14, 444
PspGI CCWGG 2 cut(s) 14, 444
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 335
SacI GAGCTC 1 cut(s) 118
SatI GCNGC 4 cut(s) 87, 226, 359, 450
Sau3AI GATC 3 cut(s) 29, 97, 210
ScrFI CCNGG 2 cut(s) 16, 446
SduI GDGCHC 1 cut(s) 118
SetI ASST 3 cut(s) 118, 349, 386
SfaNI GCATC 3 cut(s) 146, 339, 467
SmiMI CAYNNNNRTG 1 cut(s) 335
Sse9I AATT 1 cut(s) 179
SsiI CCGC 3 cut(s) 37, 359, 449
SspMI CTAG 1 cut(s) 149
SstI GAGCTC 1 cut(s) 118
StyD4I CCNGG 2 cut(s) 14, 444
StyI CCWWGG 1 cut(s) 119
TaaI ACNGT 1 cut(s) 430
TaqI TCGA 3 cut(s) 100, 177, 390
TaqII GACCGA 1 cut(s) 231
TasI AATT 1 cut(s) 179
TauI GCSGC 2 cut(s) 361, 452
TfiI GAWTC 1 cut(s) 102
TseFI GTSAC 1 cut(s) 415
TseI GCWGC 2 cut(s) 86, 225
Tsp45I GTSAC 1 cut(s) 415
XapI RAATTY 1 cut(s) 179
XspI CTAG 1 cut(s) 149
Zsp2I ATGCAT 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.