Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007021.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

57266 .. 58129

Gene Structure 864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

atgttgcataagatgattatggaaggtgctgtacctgatcttttaacattcaatttgcttattagcaagtattctgagattgggaagatagggatggcatttgagctagtgagtgtcatgaatctgttaggagtttccgctaatacagacactcatggagcaatcttaaatggactgttcagaatttcagctttccgcgcatcccgtagtcttctgtatgaaatgttggccaaaggatttactcccaagtatacaaattatttcactataattaatggtatgtgtagagtgggagatatacaaggagcatttgaactaaaagatcagatggaagctcttggtgtcacttcctgtgacattgctgagagtgctatggttagagggcttgcgaaatgtgggaaggttgaagaagcgatgctggttcttgatcgcatgcttcgaatgcaacttgttccaactactgctacttttactactttgatgcataagttctgcaaagaagccaaccttgcagaggctctaagattgaggggtgtaatgggacattgtggtgtgccactcgatgttgctgcttttaatgttctcatttcaggtctttgtgctaatggtgatgttgtggctgcatttgagctgtacaaggagatgaaacgaagtggtctcttgcccaacacaacaacgtacactcttctccttgctgctgtttcctctggtaataatcacattgaaggtgaagagattttgggagatttattgggaaaggggttgatatctggaaatttggatggaagcaccttaacactgcatgaccaattgaatgttgcaatgggaacattaaactcttggaggtgcaataagtggaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

287

Amino Acids

31.18

Weight (kDa)

6.59

Isoelectric Point (pI)

27.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	12 - 60	5.3e-07	PPR repeat family
PPR_long	PF17177	30 - 168	3.3e-09	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	87 - 111	7.5e-06	PPR repeat
TPR_24	PF23276	123 - 215	8.1e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	124 - 166	2e-08	PPR repeat family
PPR_2	PF13041	152 - 200	2.5e-09	PPR repeat family
PPR_3	PF13812	183 - 234	9.7e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	184 - 216	2.7e-08	PPR repeat
PPR_2	PF13041	188 - 233	1.5e-15	PPR repeat family
PPR	PF01535	191 - 220	2.1e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	251
AccII	CGCG	1 cut(s)	198
AciI	CCGC	2 cut(s)	138, 196
AcoI	YGGCCR	1 cut(s)	228
AcsI	RAATTY	2 cut(s)	183, 775
AfaI	GTAC	3 cut(s)	33, 635, 680
AfiI	CCNNNNNNNGG	1 cut(s)	514
AgsI	TTSAA	5 cut(s)	52, 314, 407, 725, 814
AluBI	AGCT	4 cut(s)	106, 191, 335, 631
AluI	AGCT	4 cut(s)	106, 191, 335, 631
Alw26I	GTCTC	1 cut(s)	662
AoxI	GGCC	1 cut(s)	228
ApeKI	GCWGC	3 cut(s)	569, 620, 695
ApoI	RAATTY	2 cut(s)	183, 775
AseI	ATTAAT	1 cut(s)	273
AspLEI	GCGC	1 cut(s)	200
AsuHPI	GGTGA	2 cut(s)	620, 740
AsuII	TTCGAA	1 cut(s)	439
BalI	TGGCCA	1 cut(s)	230
BarI	GAAGNNNNNNTAC	2 cut(s)	15, 47
BbsI	GAAGAC	1 cut(s)	203
BbvI	GCAGC	3 cut(s)	556, 607, 682
BccI	CCATC	3 cut(s)	88, 322, 776
BcgI	CGANNNNNNTGC	2 cut(s)	551, 585
BcoDI	GTCTC	1 cut(s)	662
BfaI	CTAG	1 cut(s)	107
BisI	GCNGC	3 cut(s)	570, 621, 696
BlsI	GCNGC	3 cut(s)	571, 622, 697
BmsI	GCATC	3 cut(s)	209, 405, 471
BpiI	GAAGAC	1 cut(s)	203
Bpu14I	TTCGAA	1 cut(s)	439
BsaI	GGTCTC	1 cut(s)	662
Bsc4I	CCNNNNNNNGG	1 cut(s)	514
Bse3DI	GCAATG	2 cut(s)	357, 828
BseGI	GGATG	3 cut(s)	99, 200, 787
BseLI	CCNNNNNNNGG	1 cut(s)	514
BseMI	GCAATG	2 cut(s)	357, 828
BseMII	CTCAG	2 cut(s)	66, 354
BseXI	GCAGC	3 cut(s)	556, 607, 682
Bsh1236I	CGCG	1 cut(s)	198
BshFI	GGCC	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	555
BslI	CCNNNNNNNGG	1 cut(s)	514
BsmAI	GTCTC	1 cut(s)	662
BsmFI	GGGAC	1 cut(s)	555
BsmI	GAATGC	1 cut(s)	447
BsnI	GGCC	1 cut(s)	230
Bso31I	GGTCTC	1 cut(s)	662
Bsp119I	TTCGAA	1 cut(s)	439
Bsp1407I	TGTACA	1 cut(s)	633
Bsp143I	GATC	3 cut(s)	37, 322, 427
BspACI	CCGC	2 cut(s)	138, 196
BspANI	GGCC	1 cut(s)	230
BspCNI	CTCAG	2 cut(s)	67, 355
BspFNI	CGCG	1 cut(s)	198
BspHI	TCATGA	1 cut(s)	117
BspT104I	TTCGAA	1 cut(s)	439
BspTNI	GGTCTC	1 cut(s)	662
BsrDI	GCAATG	2 cut(s)	357, 828
BsrGI	TGTACA	1 cut(s)	633
BssMI	GATC	3 cut(s)	37, 322, 427
BssNAI	GTATAC	1 cut(s)	252
Bst1107I	GTATAC	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	177
Bst6I	CTCTTC	2 cut(s)	690, 726
BstAUI	TGTACA	1 cut(s)	633
BstBI	TTCGAA	1 cut(s)	439
BstC8I	GCNNGC	2 cut(s)	387, 434
BstDEI	CTNAG	3 cut(s)	75, 363, 521
BstENI	CCTNNNNNAGG	1 cut(s)	512
BstF5I	GGATG	3 cut(s)	99, 200, 787
BstFNI	CGCG	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	3 cut(s)	40, 325, 430
BstMAI	GTCTC	1 cut(s)	662
BstMBI	GATC	3 cut(s)	37, 322, 427
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 368, 442, 509
BstNSI	RCATGY	1 cut(s)	436
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	3 cut(s)	556, 607, 682
BstV2I	GAAGAC	1 cut(s)	203
BstZ17I	GTATAC	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	230
BtgZI	GCGATG	1 cut(s)	428
BtsCI	GGATG	3 cut(s)	99, 200, 787
BtsI	GCAGTG	1 cut(s)	797
BtsIMutI	CAGTG	1 cut(s)	797
Cac8I	GCNNGC	2 cut(s)	387, 434
CciI	TCATGA	1 cut(s)	117
CfoI	GCGC	1 cut(s)	200
Csp6I	GTAC	3 cut(s)	32, 634, 679
CviAII	CATG	4 cut(s)	118, 155, 433, 803
CviJI	RGCY	9 cut(s)	106, 191, 230, 335, 385, 503, 518, 620, 631
CviKI_1	RGCY	9 cut(s)	106, 191, 230, 335, 385, 503, 518, 620, 631
CviQI	GTAC	3 cut(s)	32, 634, 679
DdeI	CTNAG	3 cut(s)	75, 363, 521
DpnI	GATC	3 cut(s)	39, 324, 429
DpnII	GATC	3 cut(s)	37, 322, 427
EaeI	YGGCCR	1 cut(s)	228
Eam1104I	CTCTTC	2 cut(s)	690, 726
EarI	CTCTTC	2 cut(s)	690, 726
Eco31I	GGTCTC	1 cut(s)	662
Eco32I	GATATC	1 cut(s)	768
EcoNI	CCTNNNNNAGG	1 cut(s)	512
EcoRV	GATATC	1 cut(s)	768
EcoT22I	ATGCAT	1 cut(s)	486
FaeI	CATG	4 cut(s)	121, 158, 436, 806
FalI	AAGNNNNNCTT	2 cut(s)	492, 524
FaqI	GGGAC	1 cut(s)	555
FatI	CATG	4 cut(s)	117, 154, 432, 802
FblI	GTMKAC	1 cut(s)	251
Fnu4HI	GCNGC	3 cut(s)	570, 621, 696
FokI	GGATG	3 cut(s)	106, 187, 794
Fsp4HI	GCNGC	3 cut(s)	570, 621, 696
FspBI	CTAG	1 cut(s)	107
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	3 cut(s)	570, 621, 696
HaeIII	GGCC	1 cut(s)	230
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	4 cut(s)	121, 158, 436, 806
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HinfI	GANTC	1 cut(s)	121
HphI	GGTGA	2 cut(s)	620, 740
Hpy166II	GTNNAC	2 cut(s)	252, 681
Hpy188I	TCNGA	3 cut(s)	76, 182, 327
Hpy188III	TCNNGA	3 cut(s)	118, 425, 771
Hpy8I	GTNNAC	2 cut(s)	252, 681
HpyAV	CCTTC	3 cut(s)	17, 394, 719
HpyCH4III	ACNGT	1 cut(s)	177
HpyCH4IV	ACGT	1 cut(s)	677
HpyCH4V	TGCA	9 cut(s)	7, 445, 484, 495, 512, 623, 802, 821, 849
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 368, 442, 509
HpyF3I	CTNAG	3 cut(s)	75, 363, 521
HpySE526I	ACGT	1 cut(s)	677
Hsp92II	CATG	4 cut(s)	121, 158, 436, 806
HspAI	GCGC	1 cut(s)	198
Kzo9I	GATC	3 cut(s)	37, 322, 427
LmnI	GCTCC	2 cut(s)	158, 305
LpnPI	CCDG	6 cut(s)	48, 364, 404, 576, 693, 756
Lsp1109I	GCAGC	3 cut(s)	556, 607, 682
LweI	GCATC	3 cut(s)	209, 405, 471
MaeI	CTAG	1 cut(s)	107
MaeII	ACGT	1 cut(s)	677
MaeIII	GTNAC	2 cut(s)	343, 353
MalI	GATC	3 cut(s)	39, 324, 429
MboI	GATC	3 cut(s)	37, 322, 427
MboII	GAAGA	5 cut(s)	97, 203, 419, 677, 743
MfeI	CAATTG	1 cut(s)	809
MlsI	TGGCCA	1 cut(s)	230
MluCI	AATT	6 cut(s)	52, 183, 256, 270, 775, 809
MluNI	TGGCCA	1 cut(s)	230
MmeI	TCCRAC	1 cut(s)	479
MnlI	CCTC	5 cut(s)	374, 508, 522, 715, 837
Mox20I	TGGCCA	1 cut(s)	230
Mph1103I	ATGCAT	1 cut(s)	486
MscI	TGGCCA	1 cut(s)	230
MseI	TTAA	6 cut(s)	44, 167, 273, 576, 794, 833
MslI	CAYNNNNRTG	1 cut(s)	549
Msp20I	TGGCCA	1 cut(s)	230
MunI	CAATTG	1 cut(s)	809
Mva1269I	GAATGC	1 cut(s)	447
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	4 cut(s)	197, 368, 442, 509
NdeII	GATC	3 cut(s)	37, 322, 427
NlaIII	CATG	4 cut(s)	121, 158, 436, 806
NmuCI	GTSAC	2 cut(s)	343, 353
NsiI	ATGCAT	1 cut(s)	486
NspI	RCATGY	1 cut(s)	436
NspV	TTCGAA	1 cut(s)	439
PaeI	GCATGC	1 cut(s)	436
PagI	TCATGA	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	1 cut(s)	436
PctI	GAATGC	1 cut(s)	447
PfeI	GAWTC	1 cut(s)	121
PkrI	GCNGC	3 cut(s)	571, 622, 697
PshBI	ATTAAT	1 cut(s)	273
RsaI	GTAC	3 cut(s)	33, 635, 680
RsaNI	GTAC	3 cut(s)	32, 634, 679
RseI	CAYNNNNRTG	1 cut(s)	549
SaqAI	TTAA	6 cut(s)	44, 167, 273, 576, 794, 833
SatI	GCNGC	3 cut(s)	570, 621, 696
Sau3AI	GATC	3 cut(s)	37, 322, 427
SfaNI	GCATC	3 cut(s)	209, 405, 471
SfuI	TTCGAA	1 cut(s)	439
SmiMI	CAYNNNNRTG	1 cut(s)	549
SphI	GCATGC	1 cut(s)	436
Sse9I	AATT	6 cut(s)	52, 183, 256, 270, 775, 809
SsiI	CCGC	2 cut(s)	138, 196
SspMI	CTAG	1 cut(s)	107
TaaI	ACNGT	1 cut(s)	177
TaiI	ACGT	1 cut(s)	680
TaqI	TCGA	2 cut(s)	439, 561
TasI	AATT	6 cut(s)	52, 183, 256, 270, 775, 809
TatI	WGTACW	1 cut(s)	633
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	6 cut(s)	44, 167, 273, 576, 794, 833
Tru9I	TTAA	6 cut(s)	44, 167, 273, 576, 794, 833
TscAI	CASTG	1 cut(s)	804
TseFI	GTSAC	2 cut(s)	343, 353
TseI	GCWGC	3 cut(s)	569, 620, 695
Tsp45I	GTSAC	2 cut(s)	343, 353
TspDTI	ATGAA	3 cut(s)	134, 234, 659
TspRI	CASTG	1 cut(s)	804
VspI	ATTAAT	1 cut(s)	273
XagI	CCTNNNNNAGG	1 cut(s)	512
XapI	RAATTY	2 cut(s)	183, 775
XceI	RCATGY	1 cut(s)	436
XmiI	GTMKAC	1 cut(s)	251
XspI	CTAG	1 cut(s)	107
Zsp2I	ATGCAT	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.