Rmu_sc0007034.1_g000025

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007034.1
N/A
Physical Location & Seq
Reverse (-)
94299 .. 95075
777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007034.1_g000025.1.cds

Sequence Viewer

Length: 777 bp
atgttgaagaaacattttgaaattgaaagagataatttgatccaactttggatagctcagggattgctccagccttcaactgagaaaaatcatcatgaaatggaggatataggcaataaatattttaatactctattgaaaaacttcttatttcaagaggttactaaaggtggcactattaccaagtacactatgcacgatcttgtgcatgatcttgtagaaaaagtatccaaatgcgacggcttgacacaggatttgaatgatacatacgaggttcgacatgttgcacgtattcctccttcaacaccagaaaacatgtcagaagtaactgttaggagattgcactcactattttcaaatgatcaagtctcaaatatcattttctccaagtttagagcattgcgcgtcttaaatttacagagggtaaatattcaagagttgccaaattcatttggcaagttgaagcacttgagatatctagacgtcccatattcaagaatcaaagcacttcccaagtcaattggcaagctctataaccttcaaacattgagaatgcaggaaactgattatctcaaagaggttccaagggaaatgcaaaacttgatcaacttgaggcatctttattttgataagacaatggaatttccggctggaatattgtacgactcagatttcaccacgtattactcagactgcatgtgcactttcaccctctgtgaactgaagaatttttggaaagatagacacacaactcaacaacaattggtaaaacaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 ko04014 map03460 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

258

Amino Acids

30.55

Weight (kDa)

8.54

Isoelectric Point (pI)

44.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 486
AccII CGCG 1 cut(s) 405
AclWI GGATC 1 cut(s) 34
AcsI RAATTY 4 cut(s) 412, 445, 641, 727
AcuI CTGAAG 1 cut(s) 743
AcyI GRCGYC 1 cut(s) 483
AfaI GTAC 2 cut(s) 188, 662
AflIII ACRYGT 2 cut(s) 280, 315
AluBI AGCT 2 cut(s) 56, 529
AluI AGCT 2 cut(s) 56, 529
Alw21I GWGCWC 1 cut(s) 704
Alw26I GTCTC 1 cut(s) 373
Alw44I GTGCAC 1 cut(s) 700
AlwI GGATC 1 cut(s) 34
ApaLI GTGCAC 1 cut(s) 700
ApoI RAATTY 4 cut(s) 412, 445, 641, 727
ArsI GACNNNNNNTTYG 2 cut(s) 238, 270
Asp700I GAANNNNTTC 1 cut(s) 143
AspLEI GCGC 1 cut(s) 405
AsuHPI GGTGA 2 cut(s) 667, 700
BaeGI GKGCMC 1 cut(s) 704
BarI GAAGNNNNNNTAC 2 cut(s) 283, 315
Bbv12I GWGCWC 1 cut(s) 704
BceAI ACGGC 1 cut(s) 256
BciVI GTATCC 1 cut(s) 238
BclI TGATCA 2 cut(s) 361, 603
BcoDI GTCTC 1 cut(s) 373
BfaI CTAG 1 cut(s) 479
BfuI GTATCC 1 cut(s) 238
BmiI GGNNCC 1 cut(s) 582
BmsI GCATC 1 cut(s) 625
BpmI CTGGAG 1 cut(s) 53
Bpu10I CCTNAGC 1 cut(s) 57
BpuEI CTTGAG 2 cut(s) 490, 631
BsaAI YACGTR 2 cut(s) 290, 681
BsaHI GRCGYC 1 cut(s) 483
BsaJI CCNNGG 1 cut(s) 584
Bse3DI GCAATG 1 cut(s) 398
BseDI CCNNGG 1 cut(s) 584
BseMI GCAATG 1 cut(s) 398
BseMII CTCAG 4 cut(s) 71, 72, 681, 702
BseSI GKGCMC 1 cut(s) 704
Bsh1236I CGCG 1 cut(s) 405
BsiHKAI GWGCWC 1 cut(s) 704
BsiSI CCGG 1 cut(s) 647
BslFI GGGAC 1 cut(s) 470
BsmAI GTCTC 1 cut(s) 373
BsmFI GGGAC 1 cut(s) 470
BsmI GAATGC 1 cut(s) 558
Bsp1286I GDGCHC 1 cut(s) 704
Bsp143I GATC 5 cut(s) 39, 199, 211, 361, 603
BspCNI CTCAG 4 cut(s) 70, 73, 680, 701
BspFNI CGCG 1 cut(s) 405
BspHI TCATGA 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 582
BspPI GGATC 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 398
BssECI CCNNGG 1 cut(s) 584
BssMI GATC 5 cut(s) 39, 199, 211, 361, 603
BssNI GRCGYC 1 cut(s) 483
BssT1I CCWWGG 1 cut(s) 584
Bst4CI ACNGT 1 cut(s) 331
BstACI GRCGYC 1 cut(s) 483
BstBAI YACGTR 2 cut(s) 290, 681
BstC8I GCNNGC 1 cut(s) 527
BstDEI CTNAG 4 cut(s) 57, 81, 667, 688
BstFNI CGCG 1 cut(s) 405
BstHHI GCGC 1 cut(s) 405
BstKTI GATC 5 cut(s) 42, 202, 214, 364, 606
BstMAI GTCTC 1 cut(s) 373
BstMBI GATC 5 cut(s) 39, 199, 211, 361, 603
BstNSI RCATGY 3 cut(s) 284, 319, 700
BstSLI GKGCMC 1 cut(s) 704
BstUI CGCG 1 cut(s) 405
BsuI GTATCC 1 cut(s) 238
Cac8I GCNNGC 1 cut(s) 527
CciI TCATGA 1 cut(s) 94
CfoI GCGC 1 cut(s) 405
CseI GACGC 1 cut(s) 394
Csp6I GTAC 2 cut(s) 187, 661
CviAII CATG 5 cut(s) 95, 209, 281, 316, 697
CviJI RGCY 5 cut(s) 56, 73, 243, 529, 650
CviKI_1 RGCY 5 cut(s) 56, 73, 243, 529, 650
CviQI GTAC 2 cut(s) 187, 661
DdeI CTNAG 4 cut(s) 57, 81, 667, 688
DpnI GATC 5 cut(s) 41, 201, 213, 363, 605
DpnII GATC 5 cut(s) 39, 199, 211, 361, 603
Eco130I CCWWGG 1 cut(s) 584
Eco32I GATATC 1 cut(s) 476
Eco57I CTGAAG 1 cut(s) 743
EcoRV GATATC 1 cut(s) 476
EcoT14I CCWWGG 1 cut(s) 584
ErhI CCWWGG 1 cut(s) 584
FaeI CATG 5 cut(s) 98, 212, 284, 319, 700
FaqI GGGAC 1 cut(s) 470
FatI CATG 5 cut(s) 94, 208, 280, 315, 696
FbaI TGATCA 2 cut(s) 361, 603
FspBI CTAG 1 cut(s) 479
GlaI GCGC 1 cut(s) 404
GsuI CTGGAG 1 cut(s) 53
HapII CCGG 1 cut(s) 647
HgaI GACGC 1 cut(s) 394
HhaI GCGC 1 cut(s) 405
Hin1I GRCGYC 1 cut(s) 483
Hin1II CATG 5 cut(s) 98, 212, 284, 319, 700
Hin6I GCGC 1 cut(s) 403
HinP1I GCGC 1 cut(s) 403
HinfI GANTC 2 cut(s) 498, 665
HpaII CCGG 1 cut(s) 647
HphI GGTGA 2 cut(s) 667, 700
Hpy166II GTNNAC 3 cut(s) 189, 702, 719
Hpy188I TCNGA 3 cut(s) 322, 670, 691
Hpy188III TCNNGA 5 cut(s) 95, 155, 434, 479, 495
Hpy8I GTNNAC 3 cut(s) 189, 702, 719
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 3 cut(s) 84, 309, 548
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4IV ACGT 3 cut(s) 289, 483, 680
HpyCH4V TGCA 8 cut(s) 196, 208, 287, 343, 556, 595, 696, 702
HpyF3I CTNAG 4 cut(s) 57, 81, 667, 688
HpySE526I ACGT 3 cut(s) 289, 483, 680
Hsp92I GRCGYC 1 cut(s) 483
Hsp92II CATG 5 cut(s) 98, 212, 284, 319, 700
HspAI GCGC 1 cut(s) 403
Ksp22I TGATCA 2 cut(s) 361, 603
Kzo9I GATC 5 cut(s) 39, 199, 211, 361, 603
LmnI GCTCC 1 cut(s) 72
LpnPI CCDG 7 cut(s) 44, 83, 236, 321, 542, 636, 660
LweI GCATC 1 cut(s) 625
MaeI CTAG 1 cut(s) 479
MaeII ACGT 3 cut(s) 289, 483, 680
MaeIII GTNAC 2 cut(s) 160, 325
MalI GATC 5 cut(s) 41, 201, 213, 363, 605
MboI GATC 5 cut(s) 39, 199, 211, 361, 603
MboII GAAGA 2 cut(s) 19, 736
MfeI CAATTG 2 cut(s) 519, 761
MhlI GDGCHC 1 cut(s) 704
MluCI AATT 8 cut(s) 21, 34, 412, 445, 519, 641, 727, 761
MlyI GAGTC 1 cut(s) 659
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 8 cut(s) 97, 151, 265, 306, 414, 571, 606, 722
MroXI GAANNNNTTC 1 cut(s) 143
MseI TTAA 2 cut(s) 126, 410
MspI CCGG 1 cut(s) 647
MunI CAATTG 2 cut(s) 519, 761
Mva1269I GAATGC 1 cut(s) 558
MvnI CGCG 1 cut(s) 405
NdeII GATC 5 cut(s) 39, 199, 211, 361, 603
NlaIII CATG 5 cut(s) 98, 212, 284, 319, 700
NlaIV GGNNCC 1 cut(s) 582
NspI RCATGY 3 cut(s) 284, 319, 700
PagI TCATGA 1 cut(s) 94
PciI ACATGT 2 cut(s) 280, 315
PctI GAATGC 1 cut(s) 558
PdmI GAANNNNTTC 1 cut(s) 143
PfeI GAWTC 1 cut(s) 498
PleI GAGTC 1 cut(s) 659
PpsI GAGTC 1 cut(s) 659
Ppu21I YACGTR 2 cut(s) 290, 681
PscI ACATGT 2 cut(s) 280, 315
PspN4I GGNNCC 1 cut(s) 582
RsaI GTAC 2 cut(s) 188, 662
RsaNI GTAC 2 cut(s) 187, 661
SaqAI TTAA 2 cut(s) 126, 410
Sau3AI GATC 5 cut(s) 39, 199, 211, 361, 603
SchI GAGTC 1 cut(s) 659
SduI GDGCHC 1 cut(s) 704
SfaNI GCATC 1 cut(s) 625
SmlI CTYRAG 2 cut(s) 469, 610
SmoI CTYRAG 2 cut(s) 469, 610
Sse9I AATT 8 cut(s) 21, 34, 412, 445, 519, 641, 727, 761
SspI AATATT 3 cut(s) 122, 430, 657
SspMI CTAG 1 cut(s) 479
StyI CCWWGG 1 cut(s) 584
TaaI ACNGT 1 cut(s) 331
TaiI ACGT 3 cut(s) 292, 486, 683
TaqI TCGA 1 cut(s) 277
TasI AATT 8 cut(s) 21, 34, 412, 445, 519, 641, 727, 761
TatI WGTACW 1 cut(s) 186
TfiI GAWTC 1 cut(s) 498
Tru1I TTAA 2 cut(s) 126, 410
Tru9I TTAA 2 cut(s) 126, 410
TspDTI ATGAA 2 cut(s) 111, 438
VneI GTGCAC 1 cut(s) 700
XapI RAATTY 4 cut(s) 412, 445, 641, 727
XbaI TCTAGA 1 cut(s) 478
XceI RCATGY 3 cut(s) 284, 319, 700
XmnI GAANNNNTTC 1 cut(s) 143
XspI CTAG 1 cut(s) 479
ZraI GACGTC 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.