Rmu_sc0007038.1_g000019

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007038.1
N/A
Physical Location & Seq
Forward (+)
100088 .. 100453
366 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 366 bp
atggatgattccctccagtacgagtgtatgaatgaagaagaccccagaaggttatgggtctcactcgaagacagatttggcaacgtccgtgactccctgcttcctgacctagaagtgagatggtaccttcgcttctgtgatttcaagtcaactcttgactgcaactcagaagcacttcgcattaaatccttaatggaattctgtggtaaagagatcatagatgcgatgttgattaagaagactctctgtacatttcctgtctctgcattgatggttgctaagaactatcgaatcgatgtcactgcaggacggatcacaaggtttcatgagattattggagctatgaatgtctctgaaataaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

121

Amino Acids

14.16

Weight (kDa)

5.21

Isoelectric Point (pI)

49.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 123
AccB1I GGYRCC 1 cut(s) 123
AclWI GGATC 1 cut(s) 320
AcsI RAATTY 1 cut(s) 197
AfaI GTAC 3 cut(s) 20, 125, 250
AgsI TTSAA 1 cut(s) 145
AjuI GAANNNNNNNTTGG 2 cut(s) 60, 92
AluBI AGCT 1 cut(s) 341
AluI AGCT 1 cut(s) 341
Alw26I GTCTC 3 cut(s) 64, 265, 355
AlwI GGATC 1 cut(s) 320
ApoI RAATTY 1 cut(s) 197
Asp700I GAANNNNTTC 1 cut(s) 174
Asp718I GGTACC 1 cut(s) 123
BanI GGYRCC 1 cut(s) 123
BarI GAAGNNNNNNTAC 2 cut(s) 116, 148
BbsI GAAGAC 3 cut(s) 45, 75, 245
BccI CCATC 2 cut(s) 114, 265
BcgI CGANNNNNNTGC 2 cut(s) 284, 318
BcoDI GTCTC 3 cut(s) 64, 265, 355
BfaI CTAG 1 cut(s) 110
BfmI CTRYAG 1 cut(s) 303
BmiI GGNNCC 1 cut(s) 125
BmsI GCATC 1 cut(s) 211
BpiI GAAGAC 3 cut(s) 45, 75, 245
Bsa29I ATCGAT 1 cut(s) 294
BsaI GGTCTC 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 16
BseCI ATCGAT 1 cut(s) 294
BseGI GGATG 1 cut(s) 10
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 16
BshNI GGYRCC 1 cut(s) 123
BshVI ATCGAT 1 cut(s) 294
BsmAI GTCTC 3 cut(s) 64, 265, 355
Bso31I GGTCTC 1 cut(s) 64
Bsp1407I TGTACA 1 cut(s) 248
Bsp143I GATC 2 cut(s) 213, 312
BspCNI CTCAG 1 cut(s) 179
BspDI ATCGAT 1 cut(s) 294
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 1 cut(s) 125
BspMAI CTGCAG 1 cut(s) 307
BspPI GGATC 1 cut(s) 320
BspT107I GGYRCC 1 cut(s) 123
BspTNI GGTCTC 1 cut(s) 64
BsrGI TGTACA 1 cut(s) 248
BsrI ACTGG 1 cut(s) 16
BssMI GATC 2 cut(s) 213, 312
BstAUI TGTACA 1 cut(s) 248
BstDEI CTNAG 2 cut(s) 166, 279
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 2 cut(s) 216, 315
BstMAI GTCTC 3 cut(s) 64, 265, 355
BstMBI GATC 2 cut(s) 213, 312
BstSFI CTRYAG 1 cut(s) 303
BstV2I GAAGAC 3 cut(s) 45, 75, 245
Bsu15I ATCGAT 1 cut(s) 294
BsuTUI ATCGAT 1 cut(s) 294
BtgZI GCGATG 1 cut(s) 239
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 1 cut(s) 300
CciI TCATGA 1 cut(s) 325
ClaI ATCGAT 1 cut(s) 294
Csp6I GTAC 3 cut(s) 19, 124, 249
CviAII CATG 1 cut(s) 326
CviJI RGCY 1 cut(s) 341
CviKI_1 RGCY 1 cut(s) 341
CviQI GTAC 3 cut(s) 19, 124, 249
DdeI CTNAG 2 cut(s) 166, 279
DpnI GATC 2 cut(s) 215, 314
DpnII GATC 2 cut(s) 213, 312
Eco31I GGTCTC 1 cut(s) 64
EcoRI GAATTC 1 cut(s) 197
FaeI CATG 1 cut(s) 329
FaiI YATR 5 cut(s) 29, 55, 218, 327, 344
FatI CATG 1 cut(s) 325
FokI GGATG 1 cut(s) 17
FspBI CTAG 1 cut(s) 110
Hin1II CATG 1 cut(s) 329
HincII GTYRAC 1 cut(s) 150
HindII GTYRAC 1 cut(s) 150
HinfI GANTC 4 cut(s) 8, 92, 241, 291
Hpy166II GTNNAC 1 cut(s) 150
Hpy188I TCNGA 2 cut(s) 169, 355
Hpy188III TCNNGA 3 cut(s) 104, 155, 326
Hpy8I GTNNAC 1 cut(s) 150
HpyAV CCTTC 2 cut(s) 42, 137
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 3 cut(s) 162, 266, 305
HpyF3I CTNAG 2 cut(s) 166, 279
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 1 cut(s) 329
KpnI GGTACC 1 cut(s) 127
Kzo9I GATC 2 cut(s) 213, 312
LmnI GCTCC 1 cut(s) 338
LpnPI CCDG 6 cut(s) 29, 58, 110, 117, 270, 291
LweI GCATC 1 cut(s) 211
MaeI CTAG 1 cut(s) 110
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 2 cut(s) 89, 298
MalI GATC 2 cut(s) 215, 314
MboI GATC 2 cut(s) 213, 312
MboII GAAGA 4 cut(s) 47, 50, 80, 250
MluCI AATT 1 cut(s) 197
MlyI GAGTC 2 cut(s) 86, 235
MnlI CCTC 1 cut(s) 23
MroXI GAANNNNTTC 1 cut(s) 174
MseI TTAA 3 cut(s) 183, 191, 234
NdeII GATC 2 cut(s) 213, 312
NlaIII CATG 1 cut(s) 329
NlaIV GGNNCC 1 cut(s) 125
NmuCI GTSAC 2 cut(s) 89, 298
PagI TCATGA 1 cut(s) 325
PdmI GAANNNNTTC 1 cut(s) 174
PfeI GAWTC 2 cut(s) 8, 291
PleI GAGTC 2 cut(s) 86, 235
PpsI GAGTC 2 cut(s) 86, 235
PspN4I GGNNCC 1 cut(s) 125
PstI CTGCAG 1 cut(s) 307
RsaI GTAC 3 cut(s) 20, 125, 250
RsaNI GTAC 3 cut(s) 19, 124, 249
SaqAI TTAA 3 cut(s) 183, 191, 234
Sau3AI GATC 2 cut(s) 213, 312
SchI GAGTC 2 cut(s) 86, 235
SetI ASST 7 cut(s) 53, 87, 111, 129, 323, 343, 365
SfaNI GCATC 1 cut(s) 211
SfcI CTRYAG 1 cut(s) 303
Sse9I AATT 1 cut(s) 197
SspMI CTAG 1 cut(s) 110
TaiI ACGT 1 cut(s) 87
TaqI TCGA 3 cut(s) 66, 289, 294
TasI AATT 1 cut(s) 197
TatI WGTACW 1 cut(s) 248
TfiI GAWTC 2 cut(s) 8, 291
Tru1I TTAA 3 cut(s) 183, 191, 234
Tru9I TTAA 3 cut(s) 183, 191, 234
TscAI CASTG 1 cut(s) 307
TseFI GTSAC 2 cut(s) 89, 298
Tsp45I GTSAC 2 cut(s) 89, 298
TspDTI ATGAA 4 cut(s) 44, 48, 314, 359
TspGWI ACGGA 2 cut(s) 77, 325
TspRI CASTG 1 cut(s) 307
XapI RAATTY 1 cut(s) 197
XmnI GAANNNNTTC 1 cut(s) 174
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.