Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007040.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1089 .. 2066

Gene Structure 978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007040.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atggcgactccggttgagcctccgaatggggttagatcccaaggaaagcattatttttcaatgtggcagaccctgtttgagattgataccaaatacgtgccgataaagccgattgggagaggagcctacggcatcgtgtgctcttctgtgaaccgagagaccaacgagaaagttgcgattaagaagatcaacaatgcctttgagaaccggattgatgcgctgaggaccctgcgagaattgaagctgctgcagcatctcaggcatgaaaatgtcattgctttgaaagatgtgatgatgcccattcagaggaacagcttcaaggatgtgtatttggtctatgagctcatggatacggatctccatcagattattaaatcgtctcagccactttccaatgatcattgccaccagagggaggaggatattgaatttatagacaatccaaaggcgaagaagtacatcaagtcattgccatattctcctgggacgcccttctcccgtctttaccctgatgcccatcctttggccatcgatctactacaaaagatgcttgtttttgacccatcaaagaggatcggtgtcactgaagcactccaacacccttacatgtcccaattgtatgatcccaatggtaaccctcccgcagaggtaccaattgatcttgacatagacgaggacttgggagaagagatgataagggagatgatgtggagggaaatgcttcaatatcatcctgaagctgttacaagcaacggtcaagtgtattcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

256

Amino Acids

29.6

Weight (kDa)

5.73

Isoelectric Point (pI)

42.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	649
AccB1I	GGYRCC	1 cut(s)	649
AccB7I	CCANNNNNTGG	1 cut(s)	523
AciI	CCGC	1 cut(s)	642
AclWI	GGATC	4 cut(s)	30, 363, 581, 617
AcoI	YGGCCR	1 cut(s)	525
AcsI	RAATTY	1 cut(s)	428
AcuI	CTGAAG	2 cut(s)	606, 756
AcyI	GRCGYC	1 cut(s)	488
AfaI	GTAC	2 cut(s)	458, 651
AfiI	CCNNNNNNNGG	5 cut(s)	26, 306, 412, 415, 523
AflIII	ACRYGT	1 cut(s)	606
AgsI	TTSAA	6 cut(s)	60, 241, 283, 319, 428, 725
AjnI	CCWGG	1 cut(s)	481
AluBI	AGCT	4 cut(s)	244, 315, 343, 740
AluI	AGCT	4 cut(s)	244, 315, 343, 740
Alw21I	GWGCWC	2 cut(s)	143, 345
Alw26I	GTCTC	2 cut(s)	152, 384
AlwI	GGATC	4 cut(s)	30, 363, 581, 617
AlwNI	CAGNNNCTG	1 cut(s)	73
AoxI	GGCC	1 cut(s)	525
ApeKI	GCWGC	3 cut(s)	244, 247, 250
ApoI	RAATTY	1 cut(s)	428
Asp700I	GAANNNNTTC	2 cut(s)	314, 720
Asp718I	GGTACC	1 cut(s)	649
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	1 cut(s)	225
AvaII	GGWCC	1 cut(s)	225
BalI	TGGCCA	1 cut(s)	527
BanI	GGYRCC	1 cut(s)	649
BanII	GRGCYC	1 cut(s)	345
Bbv12I	GWGCWC	2 cut(s)	143, 345
BbvCI	CCTCAGC	1 cut(s)	221
BbvI	GCAGC	3 cut(s)	231, 234, 262
BccI	CCATC	4 cut(s)	369, 525, 536, 571
BceAI	ACGGC	1 cut(s)	145
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BciT130I	CCWGG	1 cut(s)	483
BciVI	GTATCC	1 cut(s)	343
BclI	TGATCA	1 cut(s)	397
BcoDI	GTCTC	2 cut(s)	152, 384
BfmI	CTRYAG	1 cut(s)	248
BfuI	GTATCC	1 cut(s)	343
BisI	GCNGC	3 cut(s)	245, 248, 251
BlsI	GCNGC	3 cut(s)	246, 249, 252
Bme1390I	CCNGG	1 cut(s)	483
Bme18I	GGWCC	1 cut(s)	225
BmgT120I	GGNCC	1 cut(s)	225
BmiI	GGNNCC	3 cut(s)	124, 227, 651
BmrFI	CCNGG	1 cut(s)	483
BmsI	GCATC	6 cut(s)	141, 205, 262, 285, 502, 537
Bpu10I	CCTNAGC	1 cut(s)	221
Bsa29I	ATCGAT	1 cut(s)	531
BsaAI	YACGTR	1 cut(s)	97
BsaBI	GATNNNNATC	3 cut(s)	354, 360, 516
BsaHI	GRCGYC	1 cut(s)	488
BsaI	GGTCTC	1 cut(s)	152
BsaJI	CCNNGG	2 cut(s)	40, 482
BsaWI	WCCGGW	2 cut(s)	10, 207
BsaXI	ACNNNNNCTCC	2 cut(s)	692, 722
Bsc4I	CCNNNNNNNGG	5 cut(s)	26, 306, 412, 415, 523
Bse3DI	GCAATG	3 cut(s)	273, 400, 467
Bse8I	GATNNNNATC	3 cut(s)	354, 360, 516
BseBI	CCWGG	1 cut(s)	483
BseCI	ATCGAT	1 cut(s)	531
BseDI	CCNNGG	2 cut(s)	40, 482
BseGI	GGATG	3 cut(s)	328, 517, 730
BseJI	GATNNNNATC	3 cut(s)	354, 360, 516
BseLI	CCNNNNNNNGG	5 cut(s)	26, 306, 412, 415, 523
BseMI	GCAATG	3 cut(s)	273, 400, 467
BseMII	CTCAG	3 cut(s)	212, 271, 395
BseRI	GAGGAG	2 cut(s)	135, 431
BseXI	GCAGC	3 cut(s)	231, 234, 262
BshFI	GGCC	1 cut(s)	527
BshNI	GGYRCC	1 cut(s)	649
BshVI	ATCGAT	1 cut(s)	531
BsiHKAI	GWGCWC	2 cut(s)	143, 345
BsiSI	CCGG	2 cut(s)	11, 208
BslFI	GGGAC	2 cut(s)	499, 595
BslI	CCNNNNNNNGG	5 cut(s)	26, 306, 412, 415, 523
BsmAI	GTCTC	2 cut(s)	152, 384
BsmBI	CGTCTC	1 cut(s)	384
BsmFI	GGGAC	2 cut(s)	499, 595
BsnI	GGCC	1 cut(s)	527
Bso31I	GGTCTC	1 cut(s)	152
Bsp1286I	GDGCHC	2 cut(s)	143, 345
Bsp143I	GATC	8 cut(s)	35, 186, 355, 397, 532, 573, 622, 658
BspACI	CCGC	1 cut(s)	642
BspANI	GGCC	1 cut(s)	527
BspCNI	CTCAG	3 cut(s)	213, 270, 394
BspDI	ATCGAT	1 cut(s)	531
BspLI	GGNNCC	3 cut(s)	124, 227, 651
BspMAI	CTGCAG	1 cut(s)	252
BspPI	GGATC	4 cut(s)	30, 363, 581, 617
BspQI	GCTCTTC	1 cut(s)	148
BspT107I	GGYRCC	1 cut(s)	649
BspTNI	GGTCTC	1 cut(s)	152
BsrDI	GCAATG	3 cut(s)	273, 400, 467
BssECI	CCNNGG	2 cut(s)	40, 482
BssMI	GATC	8 cut(s)	35, 186, 355, 397, 532, 573, 622, 658
BssNI	GRCGYC	1 cut(s)	488
BssT1I	CCWWGG	1 cut(s)	40
Bst2UI	CCWGG	1 cut(s)	483
Bst4CI	ACNGT	1 cut(s)	755
Bst6I	CTCTTC	2 cut(s)	148, 681
BstACI	GRCGYC	1 cut(s)	488
BstAPI	GCANNNNNTGC	1 cut(s)	138
BstBAI	YACGTR	1 cut(s)	97
BstDEI	CTNAG	3 cut(s)	221, 257, 381
BstEII	GGTNACC	1 cut(s)	632
BstF5I	GGATG	3 cut(s)	328, 517, 730
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	8 cut(s)	38, 189, 358, 400, 535, 576, 625, 661
BstMAI	GTCTC	2 cut(s)	152, 384
BstMBI	GATC	8 cut(s)	35, 186, 355, 397, 532, 573, 622, 658
BstMWI	GCNNNNNNNGC	4 cut(s)	106, 138, 250, 259
BstNI	CCWGG	1 cut(s)	483
BstNSI	RCATGY	1 cut(s)	610
BstPI	GGTNACC	1 cut(s)	632
BstSCI	CCNGG	1 cut(s)	481
BstSFI	CTRYAG	1 cut(s)	248
BstV1I	GCAGC	3 cut(s)	231, 234, 262
BstX2I	RGATCY	2 cut(s)	35, 355
BstYI	RGATCY	2 cut(s)	35, 355
Bsu15I	ATCGAT	1 cut(s)	531
BsuI	GTATCC	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	527
BsuTUI	ATCGAT	1 cut(s)	531
BtsCI	GGATG	3 cut(s)	328, 517, 730
BtsIMutI	CAGTG	1 cut(s)	582
CaiI	CAGNNNCTG	1 cut(s)	73
CfoI	GCGC	1 cut(s)	220
Cfr13I	GGNCC	1 cut(s)	225
ClaI	ATCGAT	1 cut(s)	531
CseI	GACGC	1 cut(s)	496
Csp6I	GTAC	2 cut(s)	457, 650
CviAII	CATG	3 cut(s)	263, 346, 607
CviJI	RGCY	9 cut(s)	19, 109, 125, 244, 315, 343, 385, 527, 740
CviKI_1	RGCY	9 cut(s)	19, 109, 125, 244, 315, 343, 385, 527, 740
CviQI	GTAC	2 cut(s)	457, 650
DdeI	CTNAG	3 cut(s)	221, 257, 381
DpnI	GATC	8 cut(s)	37, 188, 357, 399, 534, 575, 624, 660
DpnII	GATC	8 cut(s)	35, 186, 355, 397, 532, 573, 622, 658
EaeI	YGGCCR	1 cut(s)	525
Eam1104I	CTCTTC	2 cut(s)	148, 681
EarI	CTCTTC	2 cut(s)	148, 681
Ecl136II	GAGCTC	1 cut(s)	343
Eco130I	CCWWGG	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	345
Eco31I	GGTCTC	1 cut(s)	152
Eco47I	GGWCC	1 cut(s)	225
Eco53kI	GAGCTC	1 cut(s)	343
Eco57I	CTGAAG	2 cut(s)	606, 756
Eco91I	GGTNACC	1 cut(s)	632
EcoICRI	GAGCTC	1 cut(s)	343
EcoO109I	RGGNCCY	1 cut(s)	225
EcoO65I	GGTNACC	1 cut(s)	632
EcoRII	CCWGG	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	40
Esp3I	CGTCTC	1 cut(s)	384
FaeI	CATG	3 cut(s)	266, 349, 610
FaiI	YATR	8 cut(s)	264, 339, 347, 434, 475, 608, 621, 668
FaqI	GGGAC	2 cut(s)	499, 595
FatI	CATG	3 cut(s)	262, 345, 606
FauI	CCCGC	1 cut(s)	649
FbaI	TGATCA	1 cut(s)	397
Fnu4HI	GCNGC	3 cut(s)	245, 248, 251
FokI	GGATG	3 cut(s)	335, 504, 717
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	3 cut(s)	245, 248, 251
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	3 cut(s)	245, 248, 251
HaeIII	GGCC	1 cut(s)	527
HapII	CCGG	2 cut(s)	11, 208
HgaI	GACGC	1 cut(s)	496
HhaI	GCGC	1 cut(s)	220
Hin1I	GRCGYC	1 cut(s)	488
Hin1II	CATG	3 cut(s)	266, 349, 610
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HinfI	GANTC	1 cut(s)	7
HpaII	CCGG	2 cut(s)	11, 208
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	3 cut(s)	24, 306, 366
Hpy188III	TCNNGA	2 cut(s)	662, 734
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	1 cut(s)	502
HpyCH4III	ACNGT	1 cut(s)	755
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	1 cut(s)	250
HpyF10VI	GCNNNNNNNGC	4 cut(s)	106, 138, 250, 259
HpyF3I	CTNAG	3 cut(s)	221, 257, 381
HpySE526I	ACGT	1 cut(s)	96
Hsp92I	GRCGYC	1 cut(s)	488
Hsp92II	CATG	3 cut(s)	266, 349, 610
HspAI	GCGC	1 cut(s)	218
KpnI	GGTACC	1 cut(s)	653
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	8 cut(s)	35, 186, 355, 397, 532, 573, 622, 658
LguI	GCTCTTC	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	122
Lsp1109I	GCAGC	3 cut(s)	231, 234, 262
LweI	GCATC	6 cut(s)	141, 205, 262, 285, 502, 537
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	3 cut(s)	580, 632, 742
MalI	GATC	8 cut(s)	37, 188, 357, 399, 534, 575, 624, 660
MboI	GATC	8 cut(s)	35, 186, 355, 397, 532, 573, 622, 658
MboII	GAAGA	4 cut(s)	135, 196, 463, 698
MfeI	CAATTG	2 cut(s)	614, 654
MflI	RGATCY	2 cut(s)	35, 355
MhlI	GDGCHC	2 cut(s)	143, 345
MlsI	TGGCCA	1 cut(s)	527
MluCI	AATT	4 cut(s)	236, 428, 614, 654
MluNI	TGGCCA	1 cut(s)	527
MmeI	TCCRAC	1 cut(s)	619
Mox20I	TGGCCA	1 cut(s)	527
MroXI	GAANNNNTTC	2 cut(s)	314, 720
MscI	TGGCCA	1 cut(s)	527
MseI	TTAA	2 cut(s)	180, 372
MslI	CAYNNNNRTG	1 cut(s)	267
Msp20I	TGGCCA	1 cut(s)	527
MspI	CCGG	2 cut(s)	11, 208
MspR9I	CCNGG	1 cut(s)	483
MunI	CAATTG	2 cut(s)	614, 654
MvaI	CCWGG	1 cut(s)	483
MwoI	GCNNNNNNNGC	4 cut(s)	106, 138, 250, 259
NdeII	GATC	8 cut(s)	35, 186, 355, 397, 532, 573, 622, 658
NlaIII	CATG	3 cut(s)	266, 349, 610
NlaIV	GGNNCC	3 cut(s)	124, 227, 651
NmuCI	GTSAC	1 cut(s)	580
NspI	RCATGY	1 cut(s)	610
PciI	ACATGT	1 cut(s)	606
PciSI	GCTCTTC	1 cut(s)	148
PdmI	GAANNNNTTC	2 cut(s)	314, 720
PflMI	CCANNNNNTGG	1 cut(s)	523
PkrI	GCNGC	3 cut(s)	246, 249, 252
Ppu21I	YACGTR	1 cut(s)	97
PpuMI	RGGWCCY	1 cut(s)	225
PscI	ACATGT	1 cut(s)	606
Psp124BI	GAGCTC	1 cut(s)	345
Psp5II	RGGWCCY	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	481
PspEI	GGTNACC	1 cut(s)	632
PspGI	CCWGG	1 cut(s)	481
PspN4I	GGNNCC	3 cut(s)	124, 227, 651
PspPI	GGNCC	1 cut(s)	225
PspPPI	RGGWCCY	1 cut(s)	225
PstI	CTGCAG	1 cut(s)	252
PstNI	CAGNNNCTG	1 cut(s)	73
PsuI	RGATCY	2 cut(s)	35, 355
RsaI	GTAC	2 cut(s)	458, 651
RsaNI	GTAC	2 cut(s)	457, 650
RseI	CAYNNNNRTG	1 cut(s)	267
SacI	GAGCTC	1 cut(s)	345
SapI	GCTCTTC	1 cut(s)	148
SaqAI	TTAA	2 cut(s)	180, 372
SatI	GCNGC	3 cut(s)	245, 248, 251
Sau3AI	GATC	8 cut(s)	35, 186, 355, 397, 532, 573, 622, 658
Sau96I	GGNCC	1 cut(s)	225
ScrFI	CCNGG	1 cut(s)	483
SduI	GDGCHC	2 cut(s)	143, 345
SetI	ASST	6 cut(s)	99, 246, 317, 345, 651, 742
SfaNI	GCATC	6 cut(s)	141, 205, 262, 285, 502, 537
SfcI	CTRYAG	1 cut(s)	248
SinI	GGWCC	1 cut(s)	225
SmiMI	CAYNNNNRTG	1 cut(s)	267
Sse9I	AATT	4 cut(s)	236, 428, 614, 654
SsiI	CCGC	1 cut(s)	642
SstI	GAGCTC	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	481
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	1 cut(s)	755
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	1 cut(s)	531
TasI	AATT	4 cut(s)	236, 428, 614, 654
TatI	WGTACW	1 cut(s)	456
Tru1I	TTAA	2 cut(s)	180, 372
Tru9I	TTAA	2 cut(s)	180, 372
TscAI	CASTG	1 cut(s)	589
TseFI	GTSAC	1 cut(s)	580
TseI	GCWGC	3 cut(s)	244, 247, 250
Tsp45I	GTSAC	1 cut(s)	580
TspDTI	ATGAA	1 cut(s)	279
TspGWI	ACGGA	1 cut(s)	368
TspRI	CASTG	1 cut(s)	589
Van91I	CCANNNNNTGG	1 cut(s)	523
VpaK11BI	GGWCC	1 cut(s)	225
XapI	RAATTY	1 cut(s)	428
XceI	RCATGY	1 cut(s)	610
XmnI	GAANNNNTTC	2 cut(s)	314, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.