Rmu_sc0007081.1_g000001

Protein of unknown function (DUF561)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007081.1
N/A
Physical Location & Seq
Reverse (-)
2 .. 394
393 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 255 bp
atgcaggcctcaattttcattccaacttcatcaacctctcactcccttctgaaacctatcacaaaccctcttctgggtcattcgttgtcttcaaaaccatgcttgcatctgaaaagaagagcctctttcaccaccaaagcacttctgtcaactactaaagaatcagtcttgaaagattttcatgaccgcagagctctcaagattatttcaggtttgcagaattttgacaaagaaaatgttgcatcagtcattact
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

85

Amino Acids

9.37

Weight (kDa)

10.22

Isoelectric Point (pI)

26.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 187
AcsI RAATTY 1 cut(s) 220
AfiI CCNNNNNNNGG 2 cut(s) 73, 74
AgsI TTSAA 2 cut(s) 93, 172
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
Alw21I GWGCWC 1 cut(s) 196
AoxI GGCC 1 cut(s) 6
ApoI RAATTY 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 121
BanII GRGCYC 1 cut(s) 196
BbsI GAAGAC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 196
BmsI GCATC 2 cut(s) 115, 251
BpiI GAAGAC 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 182
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 74
BseLI CCNNNNNNNGG 2 cut(s) 73, 74
BshFI GGCC 1 cut(s) 8
BsiHKAI GWGCWC 1 cut(s) 196
BslI CCNNNNNNNGG 2 cut(s) 73, 74
BsnI GGCC 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 196
BspACI CCGC 1 cut(s) 187
BspANI GGCC 1 cut(s) 8
BspHI TCATGA 1 cut(s) 181
BspQI GCTCTTC 1 cut(s) 112
Bst6I CTCTTC 2 cut(s) 75, 112
BstC8I GCNNGC 2 cut(s) 6, 104
BstV2I GAAGAC 1 cut(s) 81
BsuRI GGCC 1 cut(s) 8
Cac8I GCNNGC 2 cut(s) 6, 104
CciI TCATGA 1 cut(s) 181
CviAII CATG 2 cut(s) 99, 182
CviJI RGCY 3 cut(s) 8, 122, 194
CviKI_1 RGCY 3 cut(s) 8, 122, 194
Eam1104I CTCTTC 2 cut(s) 75, 112
EarI CTCTTC 2 cut(s) 75, 112
Ecl136II GAGCTC 1 cut(s) 194
Eco147I AGGCCT 1 cut(s) 8
Eco24I GRGCYC 1 cut(s) 196
Eco53kI GAGCTC 1 cut(s) 194
EcoICRI GAGCTC 1 cut(s) 194
EcoT38I GRGCYC 1 cut(s) 196
FaeI CATG 2 cut(s) 102, 185
FaiI YATR 2 cut(s) 100, 183
FalI AAGNNNNNCTT 2 cut(s) 109, 141
FatI CATG 2 cut(s) 98, 181
FriOI GRGCYC 1 cut(s) 196
HaeIII GGCC 1 cut(s) 8
Hin1II CATG 2 cut(s) 102, 185
HincII GTYRAC 1 cut(s) 150
HindII GTYRAC 1 cut(s) 150
HinfI GANTC 1 cut(s) 161
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 150
Hpy188I TCNGA 2 cut(s) 51, 111
Hpy188III TCNNGA 3 cut(s) 169, 182, 199
Hpy8I GTNNAC 1 cut(s) 150
HpyAV CCTTC 1 cut(s) 56
HpyCH4V TGCA 4 cut(s) 4, 106, 217, 242
Hsp92II CATG 2 cut(s) 102, 185
LguI GCTCTTC 1 cut(s) 112
LpnPI CCDG 2 cut(s) 59, 195
LweI GCATC 2 cut(s) 115, 251
MboII GAAGA 3 cut(s) 62, 81, 129
MhlI GDGCHC 1 cut(s) 196
MluCI AATT 2 cut(s) 12, 220
MmeI TCCRAC 1 cut(s) 47
MnlI CCTC 4 cut(s) 19, 46, 78, 133
NlaIII CATG 2 cut(s) 102, 185
PagI TCATGA 1 cut(s) 181
PceI AGGCCT 1 cut(s) 8
PciSI GCTCTTC 1 cut(s) 112
PfeI GAWTC 1 cut(s) 161
Psp124BI GAGCTC 1 cut(s) 196
SacI GAGCTC 1 cut(s) 196
SapI GCTCTTC 1 cut(s) 112
SduI GDGCHC 1 cut(s) 196
SetI ASST 4 cut(s) 38, 58, 196, 214
SfaNI GCATC 2 cut(s) 115, 251
SgeI CNNG 8 cut(s) 17, 86, 111, 115, 181, 194, 211, 222
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 2 cut(s) 12, 220
SseBI AGGCCT 1 cut(s) 8
SsiI CCGC 1 cut(s) 187
SstI GAGCTC 1 cut(s) 196
StuI AGGCCT 1 cut(s) 8
TasI AATT 2 cut(s) 12, 220
TfiI GAWTC 1 cut(s) 161
TspDTI ATGAA 3 cut(s) 7, 18, 170
XapI RAATTY 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.