Rmu_sc0007109.1_g000018

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007109.1
N/A
Physical Location & Seq
Forward (+)
58700 .. 59486
787 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 402 bp
atgaaccggaagcaaaagcacaaaaactggtcaagaagtgttactgaactggcaaccaaaatgttttgcagaaaagagaagaaaagaaaagaaagaaaaaaagaggaggcagccctagctgacctcaagcagagcccaagcagcgacccactaactcaagccacgtcagcaccgacgacaggtcaccgcggcgactttttcctgccagtttttcgacgactttttccgaccattttttccgaccaaattttctggcgacctatttcaaggatgagtaacctgaacaaattggattttgctccattgggaataactggctctggatatcacaagtgggttcgtgatgtccaccagcatctcaagaccgatggaatcctggatacgattctcgagcctagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

133

Amino Acids

15.42

Weight (kDa)

10.16

Isoelectric Point (pI)

55.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 189
AciI CCGC 2 cut(s) 187, 189
AcsI RAATTY 1 cut(s) 246
AfiI CCNNNNNNNGG 1 cut(s) 179
AgsI TTSAA 1 cut(s) 267
AhdI GACNNNNNGTC 1 cut(s) 180
AjiI CACGTC 1 cut(s) 165
AjnI CCWGG 1 cut(s) 375
AluBI AGCT 2 cut(s) 119, 399
AluI AGCT 2 cut(s) 119, 399
Ama87I CYCGRG 1 cut(s) 389
ApeKI GCWGC 2 cut(s) 110, 141
ApoI RAATTY 1 cut(s) 246
AsuHPI GGTGA 1 cut(s) 176
AvaI CYCGRG 1 cut(s) 389
BanII GRGCYC 1 cut(s) 137
BbvI GCAGC 2 cut(s) 122, 153
BccI CCATC 1 cut(s) 362
BciT130I CCWGG 1 cut(s) 377
BciVI GTATCC 1 cut(s) 373
BfaI CTAG 3 cut(s) 116, 396, 400
BfuI GTATCC 1 cut(s) 373
BisI GCNGC 3 cut(s) 111, 142, 190
BlsI GCNGC 3 cut(s) 112, 143, 191
Bme1390I CCNGG 1 cut(s) 377
BmeRI GACNNNNNGTC 1 cut(s) 180
BmeT110I CYCGRG 1 cut(s) 389
BmgBI CACGTC 1 cut(s) 165
BmrFI CCNGG 1 cut(s) 377
BmsI GCATC 1 cut(s) 364
BpuEI CTTGAG 3 cut(s) 110, 141, 344
BsaJI CCNNGG 1 cut(s) 187
BsaWI WCCGGW 1 cut(s) 6
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse1I ACTGG 4 cut(s) 32, 54, 206, 319
BseBI CCWGG 1 cut(s) 377
BseDI CCNNGG 1 cut(s) 187
BseGI GGATG 1 cut(s) 276
BseLI CCNNNNNNNGG 1 cut(s) 179
BseNI ACTGG 4 cut(s) 32, 54, 206, 319
BseRI GAGGAG 1 cut(s) 119
BseXI GCAGC 2 cut(s) 122, 153
Bsh1236I CGCG 1 cut(s) 189
BsiHKCI CYCGRG 1 cut(s) 389
BsiSI CCGG 1 cut(s) 7
BslI CCNNNNNNNGG 1 cut(s) 179
BsoBI CYCGRG 1 cut(s) 389
Bsp1286I GDGCHC 1 cut(s) 137
BspACI CCGC 2 cut(s) 187, 189
BspFNI CGCG 1 cut(s) 189
BsrI ACTGG 4 cut(s) 32, 54, 206, 319
BssECI CCNNGG 1 cut(s) 187
Bst2UI CCWGG 1 cut(s) 377
BstDSI CCRYGG 1 cut(s) 187
BstEII GGTNACC 1 cut(s) 182
BstF5I GGATG 1 cut(s) 276
BstFNI CGCG 1 cut(s) 189
BstMWI GCNNNNNNNGC 3 cut(s) 116, 141, 167
BstNI CCWGG 1 cut(s) 377
BstPI GGTNACC 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 375
BstUI CGCG 1 cut(s) 189
BstV1I GCAGC 2 cut(s) 122, 153
BsuI GTATCC 1 cut(s) 373
BtgI CCRYGG 1 cut(s) 187
BtrI CACGTC 1 cut(s) 165
BtsCI GGATG 1 cut(s) 276
Cfr42I CCGCGG 1 cut(s) 190
CviJI RGCY 7 cut(s) 113, 119, 135, 161, 318, 394, 399
CviKI_1 RGCY 7 cut(s) 113, 119, 135, 161, 318, 394, 399
DriI GACNNNNNGTC 1 cut(s) 180
Eam1105I GACNNNNNGTC 1 cut(s) 180
Eco24I GRGCYC 1 cut(s) 137
Eco32I GATATC 1 cut(s) 326
Eco88I CYCGRG 1 cut(s) 389
Eco91I GGTNACC 1 cut(s) 182
EcoO65I GGTNACC 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 375
EcoRV GATATC 1 cut(s) 326
EcoT38I GRGCYC 1 cut(s) 137
Fnu4HI GCNGC 3 cut(s) 111, 142, 190
FokI GGATG 1 cut(s) 283
FriOI GRGCYC 1 cut(s) 137
Fsp4HI GCNGC 3 cut(s) 111, 142, 190
FspBI CTAG 3 cut(s) 116, 396, 400
GluI GCNGC 3 cut(s) 111, 142, 190
HapII CCGG 1 cut(s) 7
HinfI GANTC 2 cut(s) 372, 385
HpaII CCGG 1 cut(s) 7
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 1 cut(s) 349
Hpy188I TCNGA 2 cut(s) 228, 241
Hpy188III TCNNGA 5 cut(s) 33, 321, 341, 361, 389
Hpy8I GTNNAC 1 cut(s) 349
Hpy99I CGWCG 2 cut(s) 178, 219
HpyCH4IV ACGT 1 cut(s) 164
HpyCH4V TGCA 1 cut(s) 69
HpyF10VI GCNNNNNNNGC 3 cut(s) 116, 141, 167
HpySE526I ACGT 1 cut(s) 164
KspI CCGCGG 1 cut(s) 190
LmnI GCTCC 1 cut(s) 304
Lsp1109I GCAGC 2 cut(s) 122, 153
LweI GCATC 1 cut(s) 364
MaeI CTAG 3 cut(s) 116, 396, 400
MaeII ACGT 1 cut(s) 164
MaeIII GTNAC 3 cut(s) 40, 182, 275
MboII GAAGA 1 cut(s) 91
MhlI GDGCHC 1 cut(s) 137
MluCI AATT 2 cut(s) 246, 287
MmeI TCCRAC 2 cut(s) 251, 264
MnlI CCTC 3 cut(s) 97, 100, 134
MspA1I CMGCKG 1 cut(s) 189
MspI CCGG 1 cut(s) 7
MspR9I CCNGG 1 cut(s) 377
MvaI CCWGG 1 cut(s) 377
MvnI CGCG 1 cut(s) 189
MwoI GCNNNNNNNGC 3 cut(s) 116, 141, 167
NmuCI GTSAC 1 cut(s) 182
PaeR7I CTCGAG 1 cut(s) 389
PcsI WCGNNNNNNNCGW 1 cut(s) 170
PfeI GAWTC 2 cut(s) 372, 385
PfoI TCCNGGA 1 cut(s) 375
PkrI GCNGC 3 cut(s) 112, 143, 191
Psp6I CCWGG 1 cut(s) 375
PspEI GGTNACC 1 cut(s) 182
PspGI CCWGG 1 cut(s) 375
SacII CCGCGG 1 cut(s) 190
SatI GCNGC 3 cut(s) 111, 142, 190
ScrFI CCNGG 1 cut(s) 377
SduI GDGCHC 1 cut(s) 137
SetI ASST 7 cut(s) 121, 126, 167, 184, 262, 282, 401
SfaNI GCATC 1 cut(s) 364
Sfr274I CTCGAG 1 cut(s) 389
Sfr303I CCGCGG 1 cut(s) 190
SgrBI CCGCGG 1 cut(s) 190
SlaI CTCGAG 1 cut(s) 389
SmlI CTYRAG 4 cut(s) 125, 156, 359, 389
SmoI CTYRAG 4 cut(s) 125, 156, 359, 389
Sse9I AATT 2 cut(s) 246, 287
SsiI CCGC 2 cut(s) 187, 189
SspMI CTAG 3 cut(s) 116, 396, 400
StyD4I CCNGG 1 cut(s) 375
TaiI ACGT 1 cut(s) 167
TaqI TCGA 2 cut(s) 214, 390
TaqII GACCGA 1 cut(s) 380
TasI AATT 2 cut(s) 246, 287
TauI GCSGC 1 cut(s) 192
TfiI GAWTC 2 cut(s) 372, 385
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 2 cut(s) 110, 141
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 246
XhoI CTCGAG 1 cut(s) 389
XspI CTAG 3 cut(s) 116, 396, 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.