Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007115.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

24125 .. 26071

Gene Structure 1947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atgggctgcgggaacttcttcttcaccattctggtgaccttctccgtagctctaatcacatacaacataatcatctcggccaattctccgctccagcaagacctccccggcccctcacggtcgtcgtcttcttcctcgatttccgtggaccccatcatcaagatgccgacggaccgctcgcgagggaaatcggccaactccaagcgactgttccacacggcggttacggcctcggattctgtgtacaacacgtggcagactcggatcatgtactactggttcaagaagtttcagaacgaaccgggttcggaaatgggcgggttcactaggatcttgcattccggtaagcctgataagtatatggatgagatccctaccttcgttgctcagcctttgcctgctggaatggatcggcaagacctccccggcccctcacggtcgtcgtcttcttcctcgatttccgtggaccccatcatcaagatgccgacggaccgctcgcgagggaaatcggccaactccaagcgactgttccacacggcggttacggcctcggattctgtgtacaacacgtggcagactcggatcatgtactactggttcaagaagtttcagaacgaaccgggttcggaaatgggcgggttcactaggatcttgcattccggtaagcctgataagtatatggatgagatccctaccttcgttgctcagcctttgcctgctggaatggatcggagcatgtgcgtggccccctgctccttaatcaaccctgcaatcgctggtgtaagactgagactcgacgacgaagactttggtgcctgcgacgacgaagactttggtgcctgcgacgacgaagactttggtgcctgcgacgacgacgaagactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005801 GO:0005802 GO:0005886 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016763 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:1990585

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

No domains found.

Protein Analysis

294

Amino Acids

32.61

Weight (kDa)

5.19

Isoelectric Point (pI)

58.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HPAT	PF23452	71 - 137	4.6e-27	Hydroxyproline O-arabinosyltransferase family
HPAT	PF23452	177 - 243	4.4e-27	Hydroxyproline O-arabinosyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	812, 836, 860
AccBSI	CCGCTC	3 cut(s)	91, 177, 495
AccII	CGCG	2 cut(s)	181, 499
AciI	CCGC	8 cut(s)	9, 89, 175, 221, 318, 493, 539, 636
AclWI	GGATC	8 cut(s)	272, 338, 364, 417, 590, 656, 682, 735
AcoI	YGGCCR	3 cut(s)	78, 192, 510
AcvI	CACGTG	2 cut(s)	252, 570
AfaI	GTAC	4 cut(s)	245, 272, 563, 590
AfiI	CCNNNNNNNGG	2 cut(s)	220, 538
AflIII	ACRYGT	2 cut(s)	249, 567
AgsI	TTSAA	2 cut(s)	283, 601
AjuI	GAANNNNNNNTTGG	4 cut(s)	194, 226, 512, 544
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
Alw26I	GTCTC	1 cut(s)	784
AlwI	GGATC	8 cut(s)	272, 338, 364, 417, 590, 656, 682, 735
AoxI	GGCC	8 cut(s)	78, 109, 192, 228, 427, 510, 546, 744
ApeKI	GCWGC	1 cut(s)	6
ArsI	GACNNNNNNTTYG	6 cut(s)	791, 815, 823, 839, 847, 871
Asp700I	GAANNNNTTC	1 cut(s)	17
AspS9I	GGNCC	7 cut(s)	110, 148, 172, 428, 466, 490, 745
AsuC2I	CCSGG	4 cut(s)	108, 303, 426, 621
AsuHPI	GGTGA	2 cut(s)	16, 46
AvaII	GGWCC	4 cut(s)	148, 172, 466, 490
BanI	GGYRCC	3 cut(s)	812, 836, 860
BbrPI	CACGTG	2 cut(s)	252, 570
BbsI	GAAGAC	5 cut(s)	120, 438, 810, 834, 858
BccI	CCATC	2 cut(s)	161, 479
BceAI	ACGGC	4 cut(s)	234, 243, 552, 561
BcnI	CCSGG	4 cut(s)	108, 303, 426, 621
BcoDI	GTCTC	1 cut(s)	784
BfaI	CTAG	2 cut(s)	327, 645
BisI	GCNGC	1 cut(s)	7
BlpI	GCTNAGC	2 cut(s)	387, 705
BlsI	GCNGC	1 cut(s)	8
Bme1390I	CCNGG	4 cut(s)	108, 303, 426, 621
Bme18I	GGWCC	4 cut(s)	148, 172, 466, 490
BmgT120I	GGNCC	7 cut(s)	110, 148, 172, 428, 466, 490, 745
BmiI	GGNNCC	8 cut(s)	112, 150, 430, 468, 747, 814, 838, 862
BmrFI	CCNGG	4 cut(s)	108, 303, 426, 621
BmsI	GCATC	2 cut(s)	153, 471
BpiI	GAAGAC	5 cut(s)	120, 438, 810, 834, 858
BpmI	CTGGAG	1 cut(s)	77
Bpu1102I	GCTNAGC	2 cut(s)	387, 705
BpuMI	CCSGG	4 cut(s)	108, 303, 426, 621
BsaAI	YACGTR	2 cut(s)	252, 570
BsaJI	CCNNGG	6 cut(s)	106, 144, 231, 424, 462, 549
BsaWI	WCCGGW	2 cut(s)	341, 659
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 538
Bse1I	ACTGG	2 cut(s)	281, 599
BseDI	CCNNGG	6 cut(s)	106, 144, 231, 424, 462, 549
BseGI	GGATG	2 cut(s)	370, 688
BseLI	CCNNNNNNNGG	2 cut(s)	220, 538
BseMII	CTCAG	3 cut(s)	401, 719, 779
BseNI	ACTGG	2 cut(s)	281, 599
Bsh1236I	CGCG	2 cut(s)	181, 499
Bsh1285I	CGRYCG	2 cut(s)	122, 440
BshFI	GGCC	8 cut(s)	80, 111, 194, 230, 429, 512, 548, 746
BshNI	GGYRCC	3 cut(s)	812, 836, 860
BsiEI	CGRYCG	2 cut(s)	122, 440
BsiSI	CCGG	6 cut(s)	108, 302, 342, 426, 620, 660
BslI	CCNNNNNNNGG	2 cut(s)	220, 538
BsmAI	GTCTC	1 cut(s)	784
BsmI	GAATGC	2 cut(s)	337, 655
BsnI	GGCC	8 cut(s)	80, 111, 194, 230, 429, 512, 548, 746
Bsp1407I	TGTACA	2 cut(s)	243, 561
Bsp143I	GATC	8 cut(s)	264, 330, 369, 409, 582, 648, 687, 727
Bsp1720I	GCTNAGC	2 cut(s)	387, 705
Bsp68I	TCGCGA	2 cut(s)	181, 499
BspACI	CCGC	8 cut(s)	9, 89, 175, 221, 318, 493, 539, 636
BspANI	GGCC	8 cut(s)	80, 111, 194, 230, 429, 512, 548, 746
BspCNI	CTCAG	3 cut(s)	400, 718, 780
BspFNI	CGCG	2 cut(s)	181, 499
BspLI	GGNNCC	8 cut(s)	112, 150, 430, 468, 747, 814, 838, 862
BspPI	GGATC	8 cut(s)	272, 338, 364, 417, 590, 656, 682, 735
BspT107I	GGYRCC	3 cut(s)	812, 836, 860
BsrBI	CCGCTC	3 cut(s)	91, 177, 495
BsrGI	TGTACA	2 cut(s)	243, 561
BsrI	ACTGG	2 cut(s)	281, 599
BssECI	CCNNGG	6 cut(s)	106, 144, 231, 424, 462, 549
BssMI	GATC	8 cut(s)	264, 330, 369, 409, 582, 648, 687, 727
Bst4CI	ACNGT	4 cut(s)	120, 210, 438, 528
BstAUI	TGTACA	2 cut(s)	243, 561
BstBAI	YACGTR	2 cut(s)	252, 570
BstC8I	GCNNGC	7 cut(s)	179, 399, 497, 717, 817, 841, 865
BstDEI	CTNAG	3 cut(s)	387, 705, 788
BstDSI	CCRYGG	2 cut(s)	144, 462
BstEII	GGTNACC	1 cut(s)	34
BstF5I	GGATG	2 cut(s)	370, 688
BstFNI	CGCG	2 cut(s)	181, 499
BstKTI	GATC	8 cut(s)	267, 333, 372, 412, 585, 651, 690, 730
BstMAI	GTCTC	1 cut(s)	784
BstMBI	GATC	8 cut(s)	264, 330, 369, 409, 582, 648, 687, 727
BstMCI	CGRYCG	2 cut(s)	122, 440
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 545
BstNSI	RCATGY	1 cut(s)	739
BstPI	GGTNACC	1 cut(s)	34
BstSCI	CCNGG	4 cut(s)	106, 301, 424, 619
BstUI	CGCG	2 cut(s)	181, 499
BstV2I	GAAGAC	5 cut(s)	120, 438, 810, 834, 858
BstX2I	RGATCY	4 cut(s)	330, 369, 648, 687
BstYI	RGATCY	4 cut(s)	330, 369, 648, 687
BsuRI	GGCC	8 cut(s)	80, 111, 194, 230, 429, 512, 548, 746
BtgI	CCRYGG	2 cut(s)	144, 462
BtsCI	GGATG	2 cut(s)	370, 688
BtuMI	TCGCGA	2 cut(s)	181, 499
Cac8I	GCNNGC	7 cut(s)	179, 399, 497, 717, 817, 841, 865
Cfr13I	GGNCC	7 cut(s)	110, 148, 172, 428, 466, 490, 745
CpoI	CGGWCCG	2 cut(s)	172, 490
Csp6I	GTAC	4 cut(s)	244, 271, 562, 589
CspI	CGGWCCG	2 cut(s)	172, 490
CviAII	CATG	3 cut(s)	268, 586, 736
CviQI	GTAC	4 cut(s)	244, 271, 562, 589
DdeI	CTNAG	3 cut(s)	387, 705, 788
DpnI	GATC	8 cut(s)	266, 332, 371, 411, 584, 650, 689, 729
DpnII	GATC	8 cut(s)	264, 330, 369, 409, 582, 648, 687, 727
EaeI	YGGCCR	3 cut(s)	78, 192, 510
Eco47I	GGWCC	4 cut(s)	148, 172, 466, 490
Eco72I	CACGTG	2 cut(s)	252, 570
Eco91I	GGTNACC	1 cut(s)	34
EcoO65I	GGTNACC	1 cut(s)	34
FaeI	CATG	3 cut(s)	271, 589, 739
FaiI	YATR	9 cut(s)	61, 68, 269, 360, 362, 587, 678, 680, 737
FatI	CATG	3 cut(s)	267, 585, 735
FauI	CCCGC	3 cut(s)	2, 311, 629
Fnu4HI	GCNGC	1 cut(s)	7
FokI	GGATG	2 cut(s)	377, 695
Fsp4HI	GCNGC	1 cut(s)	7
FspBI	CTAG	2 cut(s)	327, 645
GluI	GCNGC	1 cut(s)	7
GsuI	CTGGAG	1 cut(s)	77
HaeIII	GGCC	8 cut(s)	80, 111, 194, 230, 429, 512, 548, 746
HapII	CCGG	6 cut(s)	108, 302, 342, 426, 620, 660
Hin1II	CATG	3 cut(s)	271, 589, 739
HinfI	GANTC	5 cut(s)	236, 259, 554, 577, 792
HpaII	CCGG	6 cut(s)	108, 302, 342, 426, 620, 660
HphI	GGTGA	2 cut(s)	16, 46
Hpy166II	GTNNAC	6 cut(s)	148, 244, 324, 466, 562, 642
Hpy188I	TCNGA	9 cut(s)	235, 264, 294, 310, 553, 582, 612, 628, 732
Hpy188III	TCNNGA	6 cut(s)	160, 180, 283, 478, 498, 601
Hpy8I	GTNNAC	6 cut(s)	148, 244, 324, 466, 562, 642
HpyAV	CCTTC	3 cut(s)	49, 388, 706
HpyCH4III	ACNGT	4 cut(s)	120, 210, 438, 528
HpyCH4IV	ACGT	2 cut(s)	251, 569
HpyCH4V	TGCA	3 cut(s)	337, 655, 770
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 545
HpyF3I	CTNAG	3 cut(s)	387, 705, 788
HpySE526I	ACGT	2 cut(s)	251, 569
Hsp92II	CATG	3 cut(s)	271, 589, 739
Kzo9I	GATC	8 cut(s)	264, 330, 369, 409, 582, 648, 687, 727
LmnI	GCTCC	3 cut(s)	96, 732, 758
LweI	GCATC	2 cut(s)	153, 471
MaeI	CTAG	2 cut(s)	327, 645
MaeII	ACGT	2 cut(s)	251, 569
MaeIII	GTNAC	3 cut(s)	34, 223, 541
MalI	GATC	8 cut(s)	266, 332, 371, 411, 584, 650, 689, 729
MbiI	CCGCTC	3 cut(s)	91, 177, 495
MboI	GATC	8 cut(s)	264, 330, 369, 409, 582, 648, 687, 727
MboII	GAAGA	9 cut(s)	10, 13, 120, 123, 438, 441, 815, 839, 863
MflI	RGATCY	4 cut(s)	330, 369, 648, 687
MluCI	AATT	1 cut(s)	82
MlyI	GAGTC	3 cut(s)	253, 571, 786
MroXI	GAANNNNTTC	1 cut(s)	17
MseI	TTAA	1 cut(s)	758
MslI	CAYNNNNRTG	4 cut(s)	32, 161, 479, 740
MspI	CCGG	6 cut(s)	108, 302, 342, 426, 620, 660
MspR9I	CCNGG	4 cut(s)	108, 303, 426, 621
Mva1269I	GAATGC	2 cut(s)	337, 655
MvnI	CGCG	2 cut(s)	181, 499
MwoI	GCNNNNNNNGC	2 cut(s)	227, 545
NciI	CCSGG	4 cut(s)	108, 303, 426, 621
NdeII	GATC	8 cut(s)	264, 330, 369, 409, 582, 648, 687, 727
NlaIII	CATG	3 cut(s)	271, 589, 739
NlaIV	GGNNCC	8 cut(s)	112, 150, 430, 468, 747, 814, 838, 862
NmeAIII	GCCGAG	1 cut(s)	56
NmuCI	GTSAC	1 cut(s)	34
NruI	TCGCGA	2 cut(s)	181, 499
NspI	RCATGY	1 cut(s)	739
PctI	GAATGC	2 cut(s)	337, 655
PdmI	GAANNNNTTC	1 cut(s)	17
PfeI	GAWTC	2 cut(s)	236, 554
PkrI	GCNGC	1 cut(s)	8
PleI	GAGTC	3 cut(s)	253, 571, 786
PmaCI	CACGTG	2 cut(s)	252, 570
PmlI	CACGTG	2 cut(s)	252, 570
PpsI	GAGTC	3 cut(s)	253, 571, 786
Ppu21I	YACGTR	2 cut(s)	252, 570
PspCI	CACGTG	2 cut(s)	252, 570
PspEI	GGTNACC	1 cut(s)	34
PspN4I	GGNNCC	8 cut(s)	112, 150, 430, 468, 747, 814, 838, 862
PspPI	GGNCC	7 cut(s)	110, 148, 172, 428, 466, 490, 745
PsrI	GAACNNNNNNTAC	4 cut(s)	263, 295, 581, 613
PsuI	RGATCY	4 cut(s)	330, 369, 648, 687
RruI	TCGCGA	2 cut(s)	181, 499
RsaI	GTAC	4 cut(s)	245, 272, 563, 590
RsaNI	GTAC	4 cut(s)	244, 271, 562, 589
RseI	CAYNNNNRTG	4 cut(s)	32, 161, 479, 740
Rsr2I	CGGWCCG	2 cut(s)	172, 490
RsrII	CGGWCCG	2 cut(s)	172, 490
SaqAI	TTAA	1 cut(s)	758
SatI	GCNGC	1 cut(s)	7
Sau3AI	GATC	8 cut(s)	264, 330, 369, 409, 582, 648, 687, 727
Sau96I	GGNCC	7 cut(s)	110, 148, 172, 428, 466, 490, 745
SchI	GAGTC	3 cut(s)	253, 571, 786
ScrFI	CCNGG	4 cut(s)	108, 303, 426, 621
SetI	ASST	8 cut(s)	41, 52, 105, 254, 380, 423, 572, 698
SfaNI	GCATC	2 cut(s)	153, 471
SinI	GGWCC	4 cut(s)	148, 172, 466, 490
SmiMI	CAYNNNNRTG	4 cut(s)	32, 161, 479, 740
Sse9I	AATT	1 cut(s)	82
SsiI	CCGC	8 cut(s)	9, 89, 175, 221, 318, 493, 539, 636
SspMI	CTAG	2 cut(s)	327, 645
StyD4I	CCNGG	4 cut(s)	106, 301, 424, 619
TaaI	ACNGT	4 cut(s)	120, 210, 438, 528
TaiI	ACGT	2 cut(s)	254, 572
TaqI	TCGA	3 cut(s)	137, 455, 795
TasI	AATT	1 cut(s)	82
TatI	WGTACW	4 cut(s)	243, 270, 561, 588
TfiI	GAWTC	2 cut(s)	236, 554
Tru1I	TTAA	1 cut(s)	758
Tru9I	TTAA	1 cut(s)	758
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	1 cut(s)	6
Tsp45I	GTSAC	1 cut(s)	34
TspGWI	ACGGA	5 cut(s)	34, 133, 185, 451, 503
VpaK11BI	GGWCC	4 cut(s)	148, 172, 466, 490
XceI	RCATGY	1 cut(s)	739
XmnI	GAANNNNTTC	1 cut(s)	17
XspI	CTAG	2 cut(s)	327, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.