Rmu_sc0007121.1_g000023

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007121.1
N/A
Physical Location & Seq
Forward (+)
86505 .. 89532
3028 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1098 bp
atgctaaaagccatcaacttgtcccttccagattcagcttcaaccatcgatgtgaatgtcccaagcattgtccgtggagtcattcaggaggctttgcagacggatccacgtatcgctgcaagcttcattaggcttcacttccatgattgctttggttgtgatgcatcaattttgctggacaacagtagcagtgtcgatggcatagacagcgagaaaacagccttttcgaatgtcaatttagtgagaggatttgatgttgtggacaatattaagactgcatttgagaatgcttgtcccagcacggtttcttgtgctgatattcttgccattgcagcagaagagtctgatattcttgccattgcagcagaagagcctgtttctttgtctggaggcccctcatggacagtcctactaggaagaagggatggaacaacagcaaaccgaaccgctgctaatgaagcccttccagctcccacttcaaaccttgatgtactcaagtccaagttctcagctgtaggcctaaacaccaccgatctggttgcacttccacccagcctccttccgaaccagtcgcacccacctgcacctccgagctgcacaccagccggccgaaccagtcgcacccacctgcaccagcccgagcacactcggcctcgcctccctccaacccgcgctgcacacagcttcagccaccgcaccagcccgccttgcagatcccagcacgcccctgccgctcaccttgcacctccgagctgcacaccagcccctgcccagtccgcacgatctgcccctgtgctgctgcatcacgcacgctccagattccagcgaaagaaagaagaagaagaagaacagaggaaaagaaagaagaagaaggaagaaaaagaagaggggacccggctgggcccgaaaaaaaagaagaagaagaaaaaaaaaggagaaggagaagggatgtcgaatgaacctagactcgacttttccatgcttgactcaacaggctcggattaccacagttgggtaaccgatgttgagaaccatcacacttcaaagggaatattacccataatccaggcacctaacccggatcttatgttcaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

365

Amino Acids

39.52

Weight (kDa)

8.42

Isoelectric Point (pI)

57.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 24 - 182 6e-45 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 589, 636
Acc36I ACCTGC 2 cut(s) 589, 636
AccB1I GGYRCC 1 cut(s) 1069
AccBSI CCGCTC 1 cut(s) 734
AccII CGCG 1 cut(s) 672
AciI CCGC 6 cut(s) 447, 670, 694, 704, 732, 777
AclWI GGATC 4 cut(s) 98, 111, 708, 1089
AcoI YGGCCR 1 cut(s) 607
AcuI CTGAAG 1 cut(s) 670
AfaI GTAC 1 cut(s) 492
AfiI CCNNNNNNNGG 1 cut(s) 1012
AgsI TTSAA 4 cut(s) 42, 480, 1044, 1093
AjnI CCWGG 1 cut(s) 1065
AloI GAACNNNNNNTCC 1 cut(s) 1073
AluBI AGCT 7 cut(s) 38, 123, 470, 512, 594, 684, 753
AluI AGCT 7 cut(s) 38, 123, 470, 512, 594, 684, 753
Alw21I GWGCWC 1 cut(s) 645
AlwI GGATC 4 cut(s) 98, 111, 708, 1089
AlwNI CAGNNNCTG 1 cut(s) 767
Ama87I CYCGRG 1 cut(s) 638
AoxI GGCC 5 cut(s) 391, 517, 607, 650, 901
ApaI GGGCCC 1 cut(s) 905
ApeKI GCWGC 9 cut(s) 116, 332, 362, 449, 594, 674, 753, 796, 799
Asp700I GAANNNNTTC 1 cut(s) 462
AspLEI GCGC 1 cut(s) 674
AspS9I GGNCC 4 cut(s) 392, 891, 901, 902
AsuC2I CCSGG 2 cut(s) 895, 1079
AsuHPI GGTGA 1 cut(s) 728
AsuII TTCGAA 1 cut(s) 227
AvaI CYCGRG 1 cut(s) 638
AvaII GGWCC 1 cut(s) 891
BaeGI GKGCMC 1 cut(s) 905
BamHI GGATCC 1 cut(s) 103
BanI GGYRCC 1 cut(s) 1069
BanII GRGCYC 1 cut(s) 905
Bbv12I GWGCWC 1 cut(s) 645
BbvI GCAGC 9 cut(s) 103, 344, 374, 436, 581, 661, 740, 783, 786
BccI CCATC 5 cut(s) 20, 53, 191, 419, 1041
BcgI CGANNNNNNTGC 2 cut(s) 521, 555
BciT130I CCWGG 1 cut(s) 1067
BcnI CCSGG 2 cut(s) 895, 1079
BfaI CTAG 2 cut(s) 413, 963
BfmI CTRYAG 1 cut(s) 513
BfuAI ACCTGC 2 cut(s) 589, 636
Bme1390I CCNGG 3 cut(s) 895, 1067, 1079
Bme18I GGWCC 1 cut(s) 891
BmeT110I CYCGRG 1 cut(s) 638
BmgT120I GGNCC 4 cut(s) 392, 891, 901, 902
BmiI GGNNCC 6 cut(s) 105, 394, 892, 893, 903, 1071
BmrFI CCNGG 3 cut(s) 895, 1067, 1079
BmrI ACTGGG 1 cut(s) 766
BmsI GCATC 3 cut(s) 151, 173, 811
BmuI ACTGGG 1 cut(s) 766
BpmI CTGGAG 2 cut(s) 408, 799
Bpu14I TTCGAA 1 cut(s) 227
BpuEI CTTGAG 1 cut(s) 479
BpuMI CCSGG 2 cut(s) 895, 1079
Bsa29I ATCGAT 1 cut(s) 48
BsaAI YACGTR 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 73
BsaXI ACNNNNNCTCC 4 cut(s) 540, 570, 797, 827
Bsc4I CCNNNNNNNGG 1 cut(s) 1012
Bse118I RCCGGY 1 cut(s) 605
Bse1I ACTGG 3 cut(s) 568, 615, 772
Bse3DI GCAATG 2 cut(s) 327, 357
BseBI CCWGG 1 cut(s) 1067
BseCI ATCGAT 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 73
BseGI GGATG 2 cut(s) 430, 954
BseLI CCNNNNNNNGG 1 cut(s) 1012
BseMI GCAATG 2 cut(s) 327, 357
BseMII CTCAG 1 cut(s) 522
BseNI ACTGG 3 cut(s) 568, 615, 772
BseSI GKGCMC 1 cut(s) 905
BseX3I CGGCCG 1 cut(s) 607
BseXI GCAGC 9 cut(s) 103, 344, 374, 436, 581, 661, 740, 783, 786
BseYI CCCAGC 4 cut(s) 296, 551, 717, 898
BsgI GTGCAG 5 cut(s) 567, 580, 614, 660, 739
Bsh1236I CGCG 1 cut(s) 672
Bsh1285I CGRYCG 1 cut(s) 610
BshFI GGCC 5 cut(s) 393, 519, 609, 652, 903
BshNI GGYRCC 1 cut(s) 1069
BshVI ATCGAT 1 cut(s) 48
BsiEI CGRYCG 1 cut(s) 610
BsiHKAI GWGCWC 1 cut(s) 645
BsiHKCI CYCGRG 1 cut(s) 638
BsiSI CCGG 3 cut(s) 606, 895, 1079
BslFI GGGAC 4 cut(s) 7, 44, 279, 904
BslI CCNNNNNNNGG 1 cut(s) 1012
BsmFI GGGAC 4 cut(s) 7, 44, 279, 904
BsmI GAATGC 1 cut(s) 292
BsnI GGCC 5 cut(s) 393, 519, 609, 652, 903
BsoBI CYCGRG 1 cut(s) 638
Bsp119I TTCGAA 1 cut(s) 227
Bsp120I GGGCCC 1 cut(s) 901
Bsp1286I GDGCHC 2 cut(s) 645, 905
Bsp143I GATC 5 cut(s) 103, 532, 713, 782, 1081
BspACI CCGC 6 cut(s) 447, 670, 694, 704, 732, 777
BspANI GGCC 5 cut(s) 393, 519, 609, 652, 903
BspCNI CTCAG 1 cut(s) 521
BspDI ATCGAT 1 cut(s) 48
BspFNI CGCG 1 cut(s) 672
BspLI GGNNCC 6 cut(s) 105, 394, 892, 893, 903, 1071
BspMI ACCTGC 2 cut(s) 589, 636
BspPI GGATC 4 cut(s) 98, 111, 708, 1089
BspQI GCTCTTC 1 cut(s) 363
BspT104I TTCGAA 1 cut(s) 227
BspT107I GGYRCC 1 cut(s) 1069
BsrBI CCGCTC 1 cut(s) 734
BsrDI GCAATG 2 cut(s) 327, 357
BsrFI RCCGGY 1 cut(s) 605
BsrI ACTGG 3 cut(s) 568, 615, 772
BssAI RCCGGY 1 cut(s) 605
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 5 cut(s) 103, 532, 713, 782, 1081
Bst2UI CCWGG 1 cut(s) 1067
Bst4CI ACNGT 4 cut(s) 185, 304, 406, 1010
Bst6I CTCTTC 3 cut(s) 333, 363, 879
BstAPI GCANNNNNTGC 1 cut(s) 785
BstBAI YACGTR 1 cut(s) 110
BstBI TTCGAA 1 cut(s) 227
BstC8I GCNNGC 5 cut(s) 121, 607, 704, 723, 811
BstDEI CTNAG 1 cut(s) 508
BstDSI CCRYGG 1 cut(s) 73
BstEII GGTNACC 1 cut(s) 1015
BstF5I GGATG 2 cut(s) 430, 954
BstFNI CGCG 1 cut(s) 672
BstHHI GCGC 1 cut(s) 674
BstKTI GATC 5 cut(s) 106, 535, 716, 785, 1084
BstMBI GATC 5 cut(s) 103, 532, 713, 782, 1081
BstMCI CGRYCG 1 cut(s) 610
BstNI CCWGG 1 cut(s) 1067
BstPI GGTNACC 1 cut(s) 1015
BstSCI CCNGG 3 cut(s) 893, 1065, 1077
BstSFI CTRYAG 1 cut(s) 513
BstSLI GKGCMC 1 cut(s) 905
BstUI CGCG 1 cut(s) 672
BstV1I GCAGC 9 cut(s) 103, 344, 374, 436, 581, 661, 740, 783, 786
BstX2I RGATCY 3 cut(s) 103, 713, 1081
BstXI CCANNNNNNTGG 1 cut(s) 535
BstYI RGATCY 3 cut(s) 103, 713, 1081
BstZI CGGCCG 1 cut(s) 607
Bsu15I ATCGAT 1 cut(s) 48
BsuRI GGCC 5 cut(s) 393, 519, 609, 652, 903
BsuTUI ATCGAT 1 cut(s) 48
BtgI CCRYGG 1 cut(s) 73
BtsCI GGATG 2 cut(s) 430, 954
BtsI GCAGTG 1 cut(s) 196
BtsIMutI CAGTG 1 cut(s) 196
BveI ACCTGC 2 cut(s) 589, 636
Cac8I GCNNGC 5 cut(s) 121, 607, 704, 723, 811
CaiI CAGNNNCTG 1 cut(s) 767
CfoI GCGC 1 cut(s) 674
Cfr10I RCCGGY 1 cut(s) 605
Cfr13I GGNCC 4 cut(s) 392, 891, 901, 902
ClaI ATCGAT 1 cut(s) 48
Csp6I GTAC 1 cut(s) 491
CviAII CATG 3 cut(s) 143, 399, 979
CviQI GTAC 1 cut(s) 491
DdeI CTNAG 1 cut(s) 508
DpnI GATC 5 cut(s) 105, 534, 715, 784, 1083
DpnII GATC 5 cut(s) 103, 532, 713, 782, 1081
EaeI YGGCCR 1 cut(s) 607
EagI CGGCCG 1 cut(s) 607
Eam1104I CTCTTC 3 cut(s) 333, 363, 879
EarI CTCTTC 3 cut(s) 333, 363, 879
EclXI CGGCCG 1 cut(s) 607
Eco147I AGGCCT 1 cut(s) 519
Eco24I GRGCYC 1 cut(s) 905
Eco47I GGWCC 1 cut(s) 891
Eco52I CGGCCG 1 cut(s) 607
Eco57I CTGAAG 1 cut(s) 670
Eco88I CYCGRG 1 cut(s) 638
Eco91I GGTNACC 1 cut(s) 1015
EcoO109I RGGNCCY 2 cut(s) 392, 891
EcoO65I GGTNACC 1 cut(s) 1015
EcoRII CCWGG 1 cut(s) 1065
EcoT22I ATGCAT 1 cut(s) 166
EcoT38I GRGCYC 1 cut(s) 905
FaeI CATG 3 cut(s) 146, 402, 982
FaiI YATR 6 cut(s) 144, 203, 400, 980, 1061, 1088
FaqI GGGAC 4 cut(s) 7, 44, 279, 904
FatI CATG 3 cut(s) 142, 398, 978
FauI CCCGC 2 cut(s) 677, 711
FokI GGATG 2 cut(s) 437, 961
FriOI GRGCYC 1 cut(s) 905
FspBI CTAG 2 cut(s) 413, 963
GlaI GCGC 1 cut(s) 673
GsaI CCCAGC 4 cut(s) 300, 555, 721, 902
GsuI CTGGAG 2 cut(s) 408, 799
HaeIII GGCC 5 cut(s) 393, 519, 609, 652, 903
HapII CCGG 3 cut(s) 606, 895, 1079
HhaI GCGC 1 cut(s) 674
Hin1II CATG 3 cut(s) 146, 402, 982
Hin6I GCGC 1 cut(s) 672
HinP1I GCGC 1 cut(s) 672
HindIII AAGCTT 1 cut(s) 121
HinfI GANTC 6 cut(s) 32, 78, 341, 819, 966, 986
HpaII CCGG 3 cut(s) 606, 895, 1079
HphI GGTGA 1 cut(s) 728
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 5 cut(s) 346, 564, 591, 750, 1000
Hpy188III TCNNGA 4 cut(s) 29, 86, 387, 816
Hpy8I GTNNAC 1 cut(s) 262
HpyAV CCTTC 7 cut(s) 35, 414, 473, 569, 865, 932, 938
HpyCH4III ACNGT 4 cut(s) 185, 304, 406, 1010
HpyCH4IV ACGT 1 cut(s) 109
HpyF3I CTNAG 1 cut(s) 508
HpySE526I ACGT 1 cut(s) 109
Hsp92II CATG 3 cut(s) 146, 402, 982
HspAI GCGC 1 cut(s) 672
KflI GGGWCCC 1 cut(s) 891
KroI GCCGGC 1 cut(s) 605
KroNI GCCGGC 1 cut(s) 607
Kzo9I GATC 5 cut(s) 103, 532, 713, 782, 1081
LguI GCTCTTC 1 cut(s) 363
LmnI GCTCC 2 cut(s) 475, 818
Lsp1109I GCAGC 9 cut(s) 103, 344, 374, 436, 581, 661, 740, 783, 786
LweI GCATC 3 cut(s) 151, 173, 811
MaeI CTAG 2 cut(s) 413, 963
MaeII ACGT 1 cut(s) 109
MaeIII GTNAC 1 cut(s) 1015
MalI GATC 5 cut(s) 105, 534, 715, 784, 1083
MbiI CCGCTC 1 cut(s) 734
MboI GATC 5 cut(s) 103, 532, 713, 782, 1081
MflI RGATCY 3 cut(s) 103, 713, 1081
MhlI GDGCHC 2 cut(s) 645, 905
MluCI AATT 2 cut(s) 168, 235
MlyI GAGTC 4 cut(s) 87, 350, 960, 980
MmeI TCCRAC 1 cut(s) 689
Mph1103I ATGCAT 1 cut(s) 166
MroNI GCCGGC 1 cut(s) 605
MroXI GAANNNNTTC 1 cut(s) 462
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 2 cut(s) 50, 141
MspA1I CMGCKG 2 cut(s) 449, 512
MspI CCGG 3 cut(s) 606, 895, 1079
MspR9I CCNGG 3 cut(s) 895, 1067, 1079
Mva1269I GAATGC 1 cut(s) 292
MvaI CCWGG 1 cut(s) 1067
MvnI CGCG 1 cut(s) 672
NaeI GCCGGC 1 cut(s) 607
NciI CCSGG 2 cut(s) 895, 1079
NdeII GATC 5 cut(s) 103, 532, 713, 782, 1081
NgoMIV GCCGGC 1 cut(s) 605
NlaIII CATG 3 cut(s) 146, 402, 982
NlaIV GGNNCC 6 cut(s) 105, 394, 892, 893, 903, 1071
NmeAIII GCCGAG 1 cut(s) 628
NsiI ATGCAT 1 cut(s) 166
NspV TTCGAA 1 cut(s) 227
PaqCI CACCTGC 2 cut(s) 589, 636
PceI AGGCCT 1 cut(s) 519
PciSI GCTCTTC 1 cut(s) 363
PctI GAATGC 1 cut(s) 292
PdiI GCCGGC 1 cut(s) 607
PdmI GAANNNNTTC 1 cut(s) 462
PfeI GAWTC 2 cut(s) 32, 819
PleI GAGTC 4 cut(s) 86, 349, 960, 980
PpsI GAGTC 4 cut(s) 86, 349, 960, 980
Ppu21I YACGTR 1 cut(s) 110
PpuMI RGGWCCY 1 cut(s) 891
Psp5II RGGWCCY 1 cut(s) 891
Psp6I CCWGG 1 cut(s) 1065
PspEI GGTNACC 1 cut(s) 1015
PspFI CCCAGC 4 cut(s) 296, 551, 717, 898
PspGI CCWGG 1 cut(s) 1065
PspN4I GGNNCC 6 cut(s) 105, 394, 892, 893, 903, 1071
PspOMI GGGCCC 1 cut(s) 901
PspPI GGNCC 4 cut(s) 392, 891, 901, 902
PspPPI RGGWCCY 1 cut(s) 891
PstNI CAGNNNCTG 1 cut(s) 767
PsuI RGATCY 3 cut(s) 103, 713, 1081
PvuII CAGCTG 1 cut(s) 512
RsaI GTAC 1 cut(s) 492
RsaNI GTAC 1 cut(s) 491
RseI CAYNNNNRTG 2 cut(s) 50, 141
SapI GCTCTTC 1 cut(s) 363
SaqAI TTAA 1 cut(s) 270
Sau3AI GATC 5 cut(s) 103, 532, 713, 782, 1081
Sau96I GGNCC 4 cut(s) 392, 891, 901, 902
SchI GAGTC 4 cut(s) 87, 350, 960, 980
ScrFI CCNGG 3 cut(s) 895, 1067, 1079
SduI GDGCHC 2 cut(s) 645, 905
SfaNI GCATC 3 cut(s) 151, 173, 811
SfcI CTRYAG 1 cut(s) 513
SfuI TTCGAA 1 cut(s) 227
SinI GGWCC 1 cut(s) 891
SmiMI CAYNNNNRTG 2 cut(s) 50, 141
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
Sse9I AATT 2 cut(s) 168, 235
SseBI AGGCCT 1 cut(s) 519
SsiI CCGC 6 cut(s) 447, 670, 694, 704, 732, 777
SspI AATATT 2 cut(s) 268, 1053
SspMI CTAG 2 cut(s) 413, 963
StuI AGGCCT 1 cut(s) 519
StyD4I CCNGG 3 cut(s) 893, 1065, 1077
TaaI ACNGT 4 cut(s) 185, 304, 406, 1010
TaiI ACGT 1 cut(s) 112
TaqI TCGA 5 cut(s) 48, 195, 227, 953, 969
TasI AATT 2 cut(s) 168, 235
TatI WGTACW 1 cut(s) 490
TauI GCSGC 1 cut(s) 734
TfiI GAWTC 2 cut(s) 32, 819
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 1 cut(s) 196
TseI GCWGC 9 cut(s) 116, 332, 362, 449, 594, 674, 753, 796, 799
TspDTI ATGAA 3 cut(s) 115, 471, 972
TspGWI ACGGA 2 cut(s) 62, 116
TspRI CASTG 1 cut(s) 196
VpaK11BI GGWCC 1 cut(s) 891
XcmI CCANNNNNNNNNTGG 1 cut(s) 149
XmnI GAANNNNTTC 1 cut(s) 462
XspI CTAG 2 cut(s) 413, 963
Zsp2I ATGCAT 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.