Rmu_sc0007123.1_g000001

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007123.1
N/A
Physical Location & Seq
Forward (+)
1 .. 1695
1695 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 429 bp
ctgcgggagacgatggcggcggtttattcgggaagggatgaaccgctgacggagaagcacgtggcggatgcggtggtgtttttggcttgtgaggactcggcgttcgtcaccggccataatttggtggttgatggtggactcggcaccaaacctgcctcgtccacgcctgtagcacagccacgccgacctcaccttgcagcagctgctacttcacagcagtgcagcccatccaagcagcagcagccaggccttagcatccctccagaccggcttccagcctgcccagtcggatcgcctgctgcacagatcttgccgccgccgccggacagccagatcgatcattcaacctccagccccgcatccggcagcaaccacagccccgcctgcatcgatccaagcagcccaatgcggctccgcctgcgcagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

142

Amino Acids

14.79

Weight (kDa)

7.12

Isoelectric Point (pI)

87.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 16 - 47 9.6e-07 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 422
Acc36I ACCTGC 1 cut(s) 160
AccB1I GGYRCC 1 cut(s) 143
AccB7I CCANNNNNTGG 1 cut(s) 121
AclWI GGATC 2 cut(s) 298, 386
AcoI YGGCCR 1 cut(s) 112
AcvI CACGTG 1 cut(s) 61
AfiI CCNNNNNNNGG 2 cut(s) 121, 362
AgsI TTSAA 1 cut(s) 345
AjnI CCWGG 1 cut(s) 244
AleI CACNNNNGTG 1 cut(s) 217
AloI GAACNNNNNNTCC 2 cut(s) 86, 118
AluBI AGCT 1 cut(s) 203
AluI AGCT 1 cut(s) 203
Alw26I GTCTC 1 cut(s) 2
AlwI GGATC 2 cut(s) 298, 386
AlwNI CAGNNNCTG 1 cut(s) 203
AoxI GGCC 2 cut(s) 112, 247
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
AspLEI GCGC 1 cut(s) 423
AsuHPI GGTGA 2 cut(s) 100, 182
BanI GGYRCC 1 cut(s) 143
BbrPI CACGTG 1 cut(s) 61
BccI CCATC 3 cut(s) 7, 125, 235
BciT130I CCWGG 1 cut(s) 246
BcoDI GTCTC 1 cut(s) 2
BfmI CTRYAG 1 cut(s) 168
BfuAI ACCTGC 1 cut(s) 160
BglII AGATCT 1 cut(s) 306
Bme1390I CCNGG 1 cut(s) 246
BmiI GGNNCC 2 cut(s) 145, 413
BmrFI CCNGG 1 cut(s) 246
BmrI ACTGGG 1 cut(s) 278
BmsI GCATC 4 cut(s) 58, 264, 368, 396
BmuI ACTGGG 1 cut(s) 278
BpmI CTGGAG 2 cut(s) 246, 334
Bpu10I CCTNAGC 1 cut(s) 251
Bsa29I ATCGAT 2 cut(s) 336, 390
BsaAI YACGTR 1 cut(s) 61
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 362
Bse118I RCCGGY 2 cut(s) 110, 267
Bse1I ACTGG 1 cut(s) 284
BseBI CCWGG 1 cut(s) 246
BseCI ATCGAT 2 cut(s) 336, 390
BseGI GGATG 5 cut(s) 43, 73, 227, 255, 359
BseLI CCNNNNNNNGG 2 cut(s) 121, 362
BseNI ACTGG 1 cut(s) 284
BsgI GTGCAG 2 cut(s) 241, 285
BshFI GGCC 2 cut(s) 114, 249
BshNI GGYRCC 1 cut(s) 143
BshVI ATCGAT 2 cut(s) 336, 390
BsiSI CCGG 4 cut(s) 111, 268, 323, 363
BslI CCNNNNNNNGG 2 cut(s) 121, 362
BsmAI GTCTC 1 cut(s) 2
BsmBI CGTCTC 1 cut(s) 2
BsnI GGCC 2 cut(s) 114, 249
Bsp143I GATC 5 cut(s) 290, 306, 333, 337, 391
BspANI GGCC 2 cut(s) 114, 249
BspDI ATCGAT 2 cut(s) 336, 390
BspLI GGNNCC 2 cut(s) 145, 413
BspMI ACCTGC 1 cut(s) 160
BspPI GGATC 2 cut(s) 298, 386
BspT107I GGYRCC 1 cut(s) 143
BsrFI RCCGGY 2 cut(s) 110, 267
BsrI ACTGG 1 cut(s) 284
BssAI RCCGGY 2 cut(s) 110, 267
BssMI GATC 5 cut(s) 290, 306, 333, 337, 391
Bst2UI CCWGG 1 cut(s) 246
BstAPI GCANNNNNTGC 1 cut(s) 203
BstBAI YACGTR 1 cut(s) 61
BstC8I GCNNGC 4 cut(s) 280, 297, 385, 419
BstDEI CTNAG 1 cut(s) 251
BstF5I GGATG 5 cut(s) 43, 73, 227, 255, 359
BstHHI GCGC 1 cut(s) 423
BstKTI GATC 5 cut(s) 293, 309, 336, 340, 394
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 5 cut(s) 290, 306, 333, 337, 391
BstMWI GCNNNNNNNGC 6 cut(s) 203, 241, 319, 375, 384, 418
BstNI CCWGG 1 cut(s) 246
BstSCI CCNGG 1 cut(s) 244
BstSFI CTRYAG 1 cut(s) 168
BstX2I RGATCY 1 cut(s) 306
BstYI RGATCY 1 cut(s) 306
Bsu15I ATCGAT 2 cut(s) 336, 390
BsuRI GGCC 2 cut(s) 114, 249
BsuTUI ATCGAT 2 cut(s) 336, 390
BtsCI GGATG 5 cut(s) 43, 73, 227, 255, 359
BtsI GCAGTG 1 cut(s) 224
BtsIMutI CAGTG 1 cut(s) 224
BveI ACCTGC 1 cut(s) 160
Cac8I GCNNGC 4 cut(s) 280, 297, 385, 419
CaiI CAGNNNCTG 1 cut(s) 203
CfoI GCGC 1 cut(s) 423
Cfr10I RCCGGY 2 cut(s) 110, 267
ClaI ATCGAT 2 cut(s) 336, 390
DdeI CTNAG 1 cut(s) 251
DpnI GATC 5 cut(s) 292, 308, 335, 339, 393
DpnII GATC 5 cut(s) 290, 306, 333, 337, 391
EaeI YGGCCR 1 cut(s) 112
EciI GGCGGA 2 cut(s) 80, 404
Eco147I AGGCCT 1 cut(s) 249
Eco72I CACGTG 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 244
Esp3I CGTCTC 1 cut(s) 2
FaiI YATR 1 cut(s) 117
FauI CCCGC 2 cut(s) 364, 388
FokI GGATG 5 cut(s) 50, 80, 214, 242, 346
FspI TGCGCA 1 cut(s) 422
GlaI GCGC 1 cut(s) 422
GsuI CTGGAG 2 cut(s) 246, 334
HaeIII GGCC 2 cut(s) 114, 249
HapII CCGG 4 cut(s) 111, 268, 323, 363
HhaI GCGC 1 cut(s) 423
Hin6I GCGC 1 cut(s) 421
HinP1I GCGC 1 cut(s) 421
HinfI GANTC 2 cut(s) 95, 138
HpaII CCGG 4 cut(s) 111, 268, 323, 363
HphI GGTGA 2 cut(s) 100, 182
Hpy166II GTNNAC 2 cut(s) 137, 162
Hpy188I TCNGA 1 cut(s) 290
Hpy188III TCNNGA 2 cut(s) 30, 263
Hpy8I GTNNAC 2 cut(s) 137, 162
HpyAV CCTTC 1 cut(s) 27
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 4 cut(s) 197, 222, 302, 387
HpyF10VI GCNNNNNNNGC 6 cut(s) 203, 241, 319, 375, 384, 418
HpyF3I CTNAG 1 cut(s) 251
HpySE526I ACGT 1 cut(s) 60
HspAI GCGC 1 cut(s) 421
Kzo9I GATC 5 cut(s) 290, 306, 333, 337, 391
LmnI GCTCC 1 cut(s) 417
LweI GCATC 4 cut(s) 58, 264, 368, 396
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 106
MalI GATC 5 cut(s) 292, 308, 335, 339, 393
MboI GATC 5 cut(s) 290, 306, 333, 337, 391
MflI RGATCY 1 cut(s) 306
MluCI AATT 1 cut(s) 118
MlyI GAGTC 2 cut(s) 89, 132
MmeI TCCRAC 1 cut(s) 268
MnlI CCTC 5 cut(s) 85, 166, 198, 270, 358
MslI CAYNNNNRTG 1 cut(s) 217
MspA1I CMGCKG 2 cut(s) 46, 203
MspI CCGG 4 cut(s) 111, 268, 323, 363
MspR9I CCNGG 1 cut(s) 246
MvaI CCWGG 1 cut(s) 246
MwoI GCNNNNNNNGC 6 cut(s) 203, 241, 319, 375, 384, 418
NdeII GATC 5 cut(s) 290, 306, 333, 337, 391
NlaIV GGNNCC 2 cut(s) 145, 413
NmeAIII GCCGAG 2 cut(s) 77, 120
NmuCI GTSAC 1 cut(s) 106
NsbI TGCGCA 1 cut(s) 422
OliI CACNNNNGTG 1 cut(s) 217
PceI AGGCCT 1 cut(s) 249
PflMI CCANNNNNTGG 1 cut(s) 121
PleI GAGTC 2 cut(s) 89, 132
PmaCI CACGTG 1 cut(s) 61
PmlI CACGTG 1 cut(s) 61
PpsI GAGTC 2 cut(s) 89, 132
Ppu21I YACGTR 1 cut(s) 61
Psp6I CCWGG 1 cut(s) 244
PspCI CACGTG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 2 cut(s) 145, 413
PstNI CAGNNNCTG 1 cut(s) 203
PsuI RGATCY 1 cut(s) 306
PvuII CAGCTG 1 cut(s) 203
RseI CAYNNNNRTG 1 cut(s) 217
Sau3AI GATC 5 cut(s) 290, 306, 333, 337, 391
SchI GAGTC 2 cut(s) 89, 132
ScrFI CCNGG 1 cut(s) 246
SetI ASST 6 cut(s) 63, 154, 190, 195, 205, 350
SfaNI GCATC 4 cut(s) 58, 264, 368, 396
SfcI CTRYAG 1 cut(s) 168
SmiMI CAYNNNNRTG 1 cut(s) 217
Sse9I AATT 1 cut(s) 118
SseBI AGGCCT 1 cut(s) 249
StuI AGGCCT 1 cut(s) 249
StyD4I CCNGG 1 cut(s) 244
TaiI ACGT 1 cut(s) 63
TaqI TCGA 2 cut(s) 336, 390
TasI AATT 1 cut(s) 118
TauI GCSGC 5 cut(s) 20, 316, 319, 322, 412
TscAI CASTG 1 cut(s) 224
TseFI GTSAC 1 cut(s) 106
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 1 cut(s) 54
TspGWI ACGGA 1 cut(s) 65
TspRI CASTG 1 cut(s) 224
Van91I CCANNNNNTGG 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.