Rmu_sc0007139.1_g000002

Cell number regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007139.1
N/A
Physical Location & Seq
Reverse (-)
6871 .. 7809
939 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 360 bp
atggagggcaacagggagagcaatgtccaggaggaatcgagccctcttctgagccagcaattccaggagcctgagaagtcatccaaggccgcgccggcggctcaaaccgacgagaagtctcccgttcagatgggccaggtcaatggccgaggcaatggatgctggtggaccaccgatgggctaccgtatgatgttaagtccacatattctaacatgtcgttgactcacagcagcggggtggtcggtgagcccatgggccggagccaatgggactcggaccttcttgcctgtcttggccgcaacgatgagttctgtagcagcgatcttgaagtttgtgagttttttgttttcctcttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

119

Amino Acids

13.15

Weight (kDa)

4.31

Isoelectric Point (pI)

58.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 92
AciI CCGC 4 cut(s) 90, 98, 234, 298
AcoI YGGCCR 2 cut(s) 145, 295
AfiI CCNNNNNNNGG 2 cut(s) 177, 258
AflIII ACRYGT 1 cut(s) 213
AgsI TTSAA 1 cut(s) 329
AhdI GACNNNNNGTC 1 cut(s) 115
AjnI CCWGG 3 cut(s) 27, 63, 135
Alw26I GTCTC 1 cut(s) 123
AoxI GGCC 5 cut(s) 87, 133, 145, 256, 295
ApeKI GCWGC 2 cut(s) 231, 318
AspLEI GCGC 1 cut(s) 94
AspS9I GGNCC 4 cut(s) 133, 168, 256, 277
AsuHPI GGTGA 1 cut(s) 257
AvaII GGWCC 2 cut(s) 168, 277
BanII GRGCYC 2 cut(s) 44, 252
BbvI GCAGC 2 cut(s) 243, 330
BccI CCATC 2 cut(s) 124, 170
BciT130I CCWGG 3 cut(s) 29, 65, 137
BcoDI GTCTC 1 cut(s) 123
BfmI CTRYAG 1 cut(s) 313
BglI GCCNNNNNGGC 1 cut(s) 95
BisI GCNGC 5 cut(s) 90, 99, 232, 298, 319
BlsI GCNGC 5 cut(s) 91, 100, 233, 299, 320
Bme1390I CCNGG 3 cut(s) 29, 65, 137
Bme18I GGWCC 2 cut(s) 168, 277
BmeRI GACNNNNNGTC 1 cut(s) 115
BmgT120I GGNCC 4 cut(s) 133, 168, 256, 277
BmiI GGNNCC 2 cut(s) 69, 263
BmrFI CCNGG 3 cut(s) 29, 65, 137
BmsI GCATC 1 cut(s) 149
BsaJI CCNNGG 3 cut(s) 84, 148, 252
Bsc4I CCNNNNNNNGG 2 cut(s) 177, 258
Bse118I RCCGGY 1 cut(s) 94
Bse3DI GCAATG 2 cut(s) 28, 160
BseBI CCWGG 3 cut(s) 29, 65, 137
BseDI CCNNGG 3 cut(s) 84, 148, 252
BseGI GGATG 2 cut(s) 80, 164
BseLI CCNNNNNNNGG 2 cut(s) 177, 258
BseMI GCAATG 2 cut(s) 28, 160
BseMII CTCAG 2 cut(s) 41, 63
BseXI GCAGC 2 cut(s) 243, 330
Bsh1236I CGCG 1 cut(s) 92
BshFI GGCC 5 cut(s) 89, 135, 147, 258, 297
BsiSI CCGG 2 cut(s) 95, 259
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 2 cut(s) 177, 258
BsmAI GTCTC 1 cut(s) 123
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 5 cut(s) 89, 135, 147, 258, 297
Bsp1286I GDGCHC 2 cut(s) 44, 252
Bsp143I GATC 1 cut(s) 322
Bsp19I CCATGG 1 cut(s) 252
BspACI CCGC 4 cut(s) 90, 98, 234, 298
BspANI GGCC 5 cut(s) 89, 135, 147, 258, 297
BspCNI CTCAG 2 cut(s) 42, 64
BspFNI CGCG 1 cut(s) 92
BspLI GGNNCC 2 cut(s) 69, 263
BsrDI GCAATG 2 cut(s) 28, 160
BsrFI RCCGGY 1 cut(s) 94
BssAI RCCGGY 1 cut(s) 94
BssECI CCNNGG 3 cut(s) 84, 148, 252
BssMI GATC 1 cut(s) 322
BssT1I CCWWGG 2 cut(s) 84, 252
Bst2UI CCWGG 3 cut(s) 29, 65, 137
Bst4CI ACNGT 1 cut(s) 186
Bst6I CTCTTC 1 cut(s) 51
BstAPI GCANNNNNTGC 1 cut(s) 159
BstC8I GCNNGC 2 cut(s) 56, 96
BstDEI CTNAG 2 cut(s) 50, 72
BstDSI CCRYGG 1 cut(s) 252
BstF5I GGATG 2 cut(s) 80, 164
BstFNI CGCG 1 cut(s) 92
BstHHI GCGC 1 cut(s) 94
BstKTI GATC 1 cut(s) 325
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 1 cut(s) 322
BstMWI GCNNNNNNNGC 3 cut(s) 95, 98, 159
BstNI CCWGG 3 cut(s) 29, 65, 137
BstNSI RCATGY 1 cut(s) 217
BstSCI CCNGG 3 cut(s) 27, 63, 135
BstSFI CTRYAG 1 cut(s) 313
BstUI CGCG 1 cut(s) 92
BstV1I GCAGC 2 cut(s) 243, 330
BstXI CCANNNNNNTGG 1 cut(s) 143
BsuRI GGCC 5 cut(s) 89, 135, 147, 258, 297
BtgI CCRYGG 1 cut(s) 252
BtsCI GGATG 2 cut(s) 80, 164
Cac8I GCNNGC 2 cut(s) 56, 96
CfoI GCGC 1 cut(s) 94
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 4 cut(s) 133, 168, 256, 277
CviAII CATG 2 cut(s) 214, 253
DdeI CTNAG 2 cut(s) 50, 72
DpnI GATC 1 cut(s) 324
DpnII GATC 1 cut(s) 322
DriI GACNNNNNGTC 1 cut(s) 115
EaeI YGGCCR 2 cut(s) 145, 295
Eam1104I CTCTTC 1 cut(s) 51
Eam1105I GACNNNNNGTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 51
Eco130I CCWWGG 2 cut(s) 84, 252
Eco24I GRGCYC 2 cut(s) 44, 252
Eco47I GGWCC 2 cut(s) 168, 277
EcoRII CCWGG 3 cut(s) 27, 63, 135
EcoT14I CCWWGG 2 cut(s) 84, 252
EcoT38I GRGCYC 2 cut(s) 44, 252
ErhI CCWWGG 2 cut(s) 84, 252
FaeI CATG 2 cut(s) 217, 256
FaiI YATR 4 cut(s) 189, 205, 215, 254
FaqI GGGAC 1 cut(s) 284
FatI CATG 2 cut(s) 213, 252
FauI CCCGC 1 cut(s) 227
Fnu4HI GCNGC 5 cut(s) 90, 99, 232, 298, 319
FokI GGATG 2 cut(s) 67, 171
FriOI GRGCYC 2 cut(s) 44, 252
Fsp4HI GCNGC 5 cut(s) 90, 99, 232, 298, 319
GlaI GCGC 1 cut(s) 93
GluI GCNGC 5 cut(s) 90, 99, 232, 298, 319
HaeIII GGCC 5 cut(s) 89, 135, 147, 258, 297
HapII CCGG 2 cut(s) 95, 259
HhaI GCGC 1 cut(s) 94
Hin1II CATG 2 cut(s) 217, 256
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HinfI GANTC 3 cut(s) 35, 223, 272
HpaII CCGG 2 cut(s) 95, 259
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 3 cut(s) 168, 201, 222
Hpy188I TCNGA 3 cut(s) 51, 129, 277
Hpy188III TCNNGA 1 cut(s) 326
Hpy8I GTNNAC 3 cut(s) 168, 201, 222
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 1 cut(s) 290
HpyCH4III ACNGT 1 cut(s) 186
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 98, 159
HpyF3I CTNAG 2 cut(s) 50, 72
Hsp92II CATG 2 cut(s) 217, 256
HspAI GCGC 1 cut(s) 92
KroI GCCGGC 1 cut(s) 94
KroNI GCCGGC 1 cut(s) 96
Kzo9I GATC 1 cut(s) 322
LmnI GCTCC 2 cut(s) 67, 261
Lsp1109I GCAGC 2 cut(s) 243, 330
LweI GCATC 1 cut(s) 149
MalI GATC 1 cut(s) 324
MboI GATC 1 cut(s) 322
MboII GAAGA 1 cut(s) 38
MhlI GDGCHC 2 cut(s) 44, 252
MluCI AATT 1 cut(s) 59
MlyI GAGTC 2 cut(s) 217, 266
MnlI CCTC 3 cut(s) 25, 54, 143
MreI CGCCGGCG 1 cut(s) 94
MroNI GCCGGC 1 cut(s) 94
MseI TTAA 1 cut(s) 195
MspA1I CMGCKG 1 cut(s) 234
MspI CCGG 2 cut(s) 95, 259
MspR9I CCNGG 3 cut(s) 29, 65, 137
MvaI CCWGG 3 cut(s) 29, 65, 137
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 3 cut(s) 95, 98, 159
NaeI GCCGGC 1 cut(s) 96
NcoI CCATGG 1 cut(s) 252
NdeII GATC 1 cut(s) 322
NgoMIV GCCGGC 1 cut(s) 94
NlaIII CATG 2 cut(s) 217, 256
NlaIV GGNNCC 2 cut(s) 69, 263
NmeAIII GCCGAG 1 cut(s) 173
NspI RCATGY 1 cut(s) 217
PciI ACATGT 1 cut(s) 213
PdiI GCCGGC 1 cut(s) 96
PfeI GAWTC 1 cut(s) 35
PfoI TCCNGGA 2 cut(s) 27, 63
PkrI GCNGC 5 cut(s) 91, 100, 233, 299, 320
PleI GAGTC 2 cut(s) 217, 266
PpsI GAGTC 2 cut(s) 217, 266
PscI ACATGT 1 cut(s) 213
Psp6I CCWGG 3 cut(s) 27, 63, 135
PspGI CCWGG 3 cut(s) 27, 63, 135
PspN4I GGNNCC 2 cut(s) 69, 263
PspPI GGNCC 4 cut(s) 133, 168, 256, 277
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 5 cut(s) 90, 99, 232, 298, 319
Sau3AI GATC 1 cut(s) 322
Sau96I GGNCC 4 cut(s) 133, 168, 256, 277
SchI GAGTC 2 cut(s) 217, 266
ScrFI CCNGG 3 cut(s) 29, 65, 137
SduI GDGCHC 2 cut(s) 44, 252
SetI ASST 2 cut(s) 141, 282
SfaNI GCATC 1 cut(s) 149
SfcI CTRYAG 1 cut(s) 313
SgrAI CRCCGGYG 1 cut(s) 94
SinI GGWCC 2 cut(s) 168, 277
Sse9I AATT 1 cut(s) 59
SsiI CCGC 4 cut(s) 90, 98, 234, 298
StyD4I CCNGG 3 cut(s) 27, 63, 135
StyI CCWWGG 2 cut(s) 84, 252
TaaI ACNGT 1 cut(s) 186
TaqI TCGA 1 cut(s) 38
TasI AATT 1 cut(s) 59
TauI GCSGC 3 cut(s) 92, 101, 300
TfiI GAWTC 1 cut(s) 35
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TseI GCWGC 2 cut(s) 231, 318
VpaK11BI GGWCC 2 cut(s) 168, 277
XceI RCATGY 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.