Rmu_sc0007159.1_g000006

nucleobase-ascorbate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007159.1
N/A
Physical Location & Seq
Forward (+)
24084 .. 24659
576 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 459 bp
atggcaaccgggtcgatctcagatttcgtaaacaaggccgagagtgtgaggggtcgagctgatgtgggctctgctgagccaaaggtcgaaacttttgtgccgaggagggatcgcaatccgagagagctgaaatcatgggcgatgagaactgggtttgtgtccattttctcaggggagacggtggagagtaggaggaggaggagtgaagatgagcctgttttgggtagagatgaggagaggagatctggttgcggtgctggtgcgggtgaggaagcgaggaaattttatcctgattttagtaccaggaaggaacgggaactagacattgacggtgggagggttattctagtacaaggagcccgaggtcgacgagaaggacgtcgtcgttttgaagggggcgaacttcagcgtgcttgctgcggcttcaagacttgggatgtgcaggattttgatgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Xan_ur_permease

Protein Analysis

152

Amino Acids

17.21

Weight (kDa)

8.55

Isoelectric Point (pI)

63.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 382
AccI GTMKAC 1 cut(s) 367
AciI CCGC 3 cut(s) 252, 263, 420
AclWI GGATC 1 cut(s) 117
AcsI RAATTY 1 cut(s) 281
AcuI CTGAAG 1 cut(s) 389
AcyI GRCGYC 1 cut(s) 379
AfaI GTAC 2 cut(s) 301, 351
AfiI CCNNNNNNNGG 1 cut(s) 221
AgsI TTSAA 2 cut(s) 392, 427
AjnI CCWGG 1 cut(s) 302
AluBI AGCT 2 cut(s) 59, 127
AluI AGCT 2 cut(s) 59, 127
Alw26I GTCTC 1 cut(s) 170
AlwI GGATC 1 cut(s) 117
Ama87I CYCGRG 1 cut(s) 360
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 1 cut(s) 417
ApoI RAATTY 1 cut(s) 281
AsuC2I CCSGG 1 cut(s) 10
AsuHPI GGTGA 1 cut(s) 278
AvaI CYCGRG 1 cut(s) 360
BanII GRGCYC 2 cut(s) 71, 361
BbvI GCAGC 1 cut(s) 404
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 304
BcnI CCSGG 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 170
BfaI CTAG 2 cut(s) 320, 347
BglII AGATCT 1 cut(s) 242
BisI GCNGC 2 cut(s) 418, 421
BlpI GCTNAGC 1 cut(s) 75
BlsI GCNGC 2 cut(s) 419, 422
Bme1390I CCNGG 2 cut(s) 10, 304
BmeT110I CYCGRG 1 cut(s) 360
BmiI GGNNCC 1 cut(s) 358
BmrFI CCNGG 2 cut(s) 10, 304
BmrI ACTGGG 1 cut(s) 159
BmuI ACTGGG 1 cut(s) 159
Bpu1102I GCTNAGC 1 cut(s) 75
BpuMI CCSGG 1 cut(s) 10
BsaBI GATNNNNATC 1 cut(s) 114
BsaHI GRCGYC 1 cut(s) 379
BsaJI CCNNGG 2 cut(s) 101, 361
BsaXI ACNNNNNCTCC 4 cut(s) 187, 217, 232, 262
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse1I ACTGG 1 cut(s) 154
Bse8I GATNNNNATC 1 cut(s) 114
BseBI CCWGG 1 cut(s) 304
BseDI CCNNGG 2 cut(s) 101, 361
BseGI GGATG 1 cut(s) 442
BseJI GATNNNNATC 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMII CTCAG 3 cut(s) 33, 66, 183
BseNI ACTGG 1 cut(s) 154
BseRI GAGGAG 6 cut(s) 118, 208, 211, 214, 248, 253
BseXI GCAGC 1 cut(s) 404
BshFI GGCC 1 cut(s) 38
BsiHKCI CYCGRG 1 cut(s) 360
BsiSI CCGG 1 cut(s) 9
BslI CCNNNNNNNGG 1 cut(s) 221
BsmAI GTCTC 1 cut(s) 170
BsmBI CGTCTC 1 cut(s) 170
BsnI GGCC 1 cut(s) 38
BsoBI CYCGRG 1 cut(s) 360
Bsp1286I GDGCHC 2 cut(s) 71, 361
Bsp143I GATC 3 cut(s) 15, 109, 242
Bsp1720I GCTNAGC 1 cut(s) 75
BspACI CCGC 3 cut(s) 252, 263, 420
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 3 cut(s) 32, 67, 182
BspLI GGNNCC 1 cut(s) 358
BspPI GGATC 1 cut(s) 117
BsrI ACTGG 1 cut(s) 154
BssECI CCNNGG 2 cut(s) 101, 361
BssMI GATC 3 cut(s) 15, 109, 242
BssNI GRCGYC 1 cut(s) 379
Bst2UI CCWGG 1 cut(s) 304
Bst4CI ACNGT 2 cut(s) 181, 332
BstACI GRCGYC 1 cut(s) 379
BstC8I GCNNGC 2 cut(s) 411, 415
BstDEI CTNAG 3 cut(s) 19, 75, 169
BstF5I GGATG 1 cut(s) 442
BstKTI GATC 3 cut(s) 18, 112, 245
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 3 cut(s) 15, 109, 242
BstNI CCWGG 1 cut(s) 304
BstSCI CCNGG 2 cut(s) 8, 302
BstV1I GCAGC 1 cut(s) 404
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
BsuRI GGCC 1 cut(s) 38
BtgZI GCGATG 1 cut(s) 155
BtsCI GGATG 1 cut(s) 442
Cac8I GCNNGC 2 cut(s) 411, 415
Csp6I GTAC 2 cut(s) 300, 350
CviAII CATG 1 cut(s) 135
CviJI RGCY 8 cut(s) 38, 59, 69, 79, 127, 214, 359, 423
CviKI_1 RGCY 8 cut(s) 38, 59, 69, 79, 127, 214, 359, 423
CviQI GTAC 2 cut(s) 300, 350
DdeI CTNAG 3 cut(s) 19, 75, 169
DpnI GATC 3 cut(s) 17, 111, 244
DpnII GATC 3 cut(s) 15, 109, 242
Eco24I GRGCYC 2 cut(s) 71, 361
Eco57I CTGAAG 1 cut(s) 389
Eco88I CYCGRG 1 cut(s) 360
EcoRII CCWGG 1 cut(s) 302
EcoT38I GRGCYC 2 cut(s) 71, 361
Esp3I CGTCTC 1 cut(s) 170
FaeI CATG 1 cut(s) 138
FaiI YATR 1 cut(s) 136
FatI CATG 1 cut(s) 134
FauI CCCGC 1 cut(s) 256
FblI GTMKAC 1 cut(s) 367
Fnu4HI GCNGC 2 cut(s) 418, 421
FokI GGATG 1 cut(s) 449
FriOI GRGCYC 2 cut(s) 71, 361
Fsp4HI GCNGC 2 cut(s) 418, 421
FspBI CTAG 2 cut(s) 320, 347
GluI GCNGC 2 cut(s) 418, 421
HaeIII GGCC 1 cut(s) 38
HapII CCGG 1 cut(s) 9
Hin1I GRCGYC 1 cut(s) 379
Hin1II CATG 1 cut(s) 138
HincII GTYRAC 1 cut(s) 368
HindII GTYRAC 1 cut(s) 368
HpaII CCGG 1 cut(s) 9
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 2 cut(s) 31, 368
Hpy188I TCNGA 2 cut(s) 22, 120
Hpy188III TCNNGA 2 cut(s) 290, 427
Hpy8I GTNNAC 2 cut(s) 31, 368
Hpy99I CGWCG 3 cut(s) 372, 384, 387
HpyAV CCTTC 3 cut(s) 301, 368, 386
HpyCH4III ACNGT 2 cut(s) 181, 332
HpyCH4IV ACGT 1 cut(s) 379
HpyCH4V TGCA 1 cut(s) 442
HpyF3I CTNAG 3 cut(s) 19, 75, 169
HpySE526I ACGT 1 cut(s) 379
Hsp92I GRCGYC 1 cut(s) 379
Hsp92II CATG 1 cut(s) 138
Kzo9I GATC 3 cut(s) 15, 109, 242
LmnI GCTCC 1 cut(s) 356
Lsp1109I GCAGC 1 cut(s) 404
MaeI CTAG 2 cut(s) 320, 347
MaeII ACGT 1 cut(s) 379
MalI GATC 3 cut(s) 17, 111, 244
MboI GATC 3 cut(s) 15, 109, 242
MboII GAAGA 1 cut(s) 218
MflI RGATCY 1 cut(s) 242
MhlI GDGCHC 2 cut(s) 71, 361
MluCI AATT 1 cut(s) 281
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 2 cut(s) 10, 304
MvaI CCWGG 1 cut(s) 304
NciI CCSGG 1 cut(s) 10
NdeII GATC 3 cut(s) 15, 109, 242
NlaIII CATG 1 cut(s) 138
NlaIV GGNNCC 1 cut(s) 358
NmeAIII GCCGAG 2 cut(s) 64, 126
PcsI WCGNNNNNNNCGW 1 cut(s) 376
PflFI GACNNNGTC 1 cut(s) 381
PkrI GCNGC 2 cut(s) 419, 422
Psp6I CCWGG 1 cut(s) 302
PspGI CCWGG 1 cut(s) 302
PspN4I GGNNCC 1 cut(s) 358
PsuI RGATCY 1 cut(s) 242
PsyI GACNNNGTC 1 cut(s) 381
RsaI GTAC 2 cut(s) 301, 351
RsaNI GTAC 2 cut(s) 300, 350
SalI GTCGAC 1 cut(s) 366
SatI GCNGC 2 cut(s) 418, 421
Sau3AI GATC 3 cut(s) 15, 109, 242
ScrFI CCNGG 2 cut(s) 10, 304
SduI GDGCHC 2 cut(s) 71, 361
SetI ASST 5 cut(s) 61, 87, 129, 367, 382
Sse9I AATT 1 cut(s) 281
SsiI CCGC 3 cut(s) 252, 263, 420
SspMI CTAG 2 cut(s) 320, 347
StyD4I CCNGG 2 cut(s) 8, 302
TaaI ACNGT 2 cut(s) 181, 332
TaiI ACGT 1 cut(s) 382
TaqI TCGA 4 cut(s) 14, 55, 87, 367
TasI AATT 1 cut(s) 281
TatI WGTACW 1 cut(s) 349
TauI GCSGC 1 cut(s) 423
TseI GCWGC 1 cut(s) 417
Tth111I GACNNNGTC 1 cut(s) 381
XapI RAATTY 1 cut(s) 281
XmiI GTMKAC 1 cut(s) 367
XspI CTAG 2 cut(s) 320, 347
ZraI GACGTC 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.