Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007172.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2016

Gene Structure 2016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgagttctacattttcacttgcaccaaaaccttacattagagagaacaatggaaaactcctgcccccaaaatctatgctcacaacaattagagctgaagtgattacagctcccaagcaaagaagcacgcggatttttcctgaactgtcaatacaaggcattcctgttgctgatttgcatgtacaagaaattgttcaaaggcaatccaagacttacaacacagccaatggaggtactagccgaaagccacagttcgatccatgctttcttgaagaagcgtatgaaaggtgcaggaccatctgtgcagaatatgccaagacattctatctaggcactttgctaatgacagaggagcgtcaaaaggcaatatgggcaatctatgtttggtgcagaagaacagatgaactggttgatggccccaattctgggcacatggactctgaagttcttgatagatgggaagagagactagaagacattttcgaaggacggccttatgacatgcttgatgctgcattgactcatact

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00906 ko01062 ko01100 ko01110 map00906 map01062 map01100 map01110

Pfam Domains

Protein Families

SQS_PSY

Protein Analysis

176

Amino Acids

20.26

Weight (kDa)

5.69

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQS_PSY	PF00494	103 - 166	1.1e-12	Squalene/phytoene synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	130
AciI	CCGC	1 cut(s)	130
AclWI	GGATC	1 cut(s)	251
AcuI	CTGAAG	2 cut(s)	117, 462
AfaI	GTAC	2 cut(s)	183, 235
AfiI	CCNNNNNNNGG	2 cut(s)	425, 426
AgsI	TTSAA	2 cut(s)	197, 272
AluBI	AGCT	2 cut(s)	95, 110
AluI	AGCT	2 cut(s)	95, 110
Alw26I	GTCTC	1 cut(s)	460
AlwI	GGATC	1 cut(s)	251
AoxI	GGCC	2 cut(s)	415, 491
ApeKI	GCWGC	1 cut(s)	512
Asp700I	GAANNNNTTC	1 cut(s)	192
AspS9I	GGNCC	2 cut(s)	294, 416
AsuII	TTCGAA	1 cut(s)	483
AvaII	GGWCC	1 cut(s)	294
BaeGI	GKGCMC	1 cut(s)	432
BbsI	GAAGAC	1 cut(s)	480
BbvI	GCAGC	1 cut(s)	499
BccI	CCATC	3 cut(s)	305, 407, 450
BceAI	ACGGC	1 cut(s)	506
BcoDI	GTCTC	1 cut(s)	460
BfaI	CTAG	3 cut(s)	237, 329, 470
BisI	GCNGC	1 cut(s)	513
BlsI	GCNGC	1 cut(s)	514
Bme18I	GGWCC	1 cut(s)	294
BmgT120I	GGNCC	2 cut(s)	294, 416
BmiI	GGNNCC	1 cut(s)	418
BmsI	GCATC	1 cut(s)	499
BpiI	GAAGAC	1 cut(s)	480
Bpu14I	TTCGAA	1 cut(s)	483
Bsc4I	CCNNNNNNNGG	2 cut(s)	425, 426
Bse1I	ACTGG	1 cut(s)	411
BseLI	CCNNNNNNNGG	2 cut(s)	425, 426
BseNI	ACTGG	1 cut(s)	411
BseRI	GAGGAG	1 cut(s)	365
BseSI	GKGCMC	1 cut(s)	432
BseXI	GCAGC	1 cut(s)	499
BsgI	GTGCAG	3 cut(s)	310, 324, 409
Bsh1236I	CGCG	1 cut(s)	130
BshFI	GGCC	2 cut(s)	417, 493
BslI	CCNNNNNNNGG	2 cut(s)	425, 426
BsmAI	GTCTC	1 cut(s)	460
BsmI	GAATGC	1 cut(s)	159
BsnI	GGCC	2 cut(s)	417, 493
Bsp119I	TTCGAA	1 cut(s)	483
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp1407I	TGTACA	1 cut(s)	181
Bsp143I	GATC	1 cut(s)	256
BspACI	CCGC	1 cut(s)	130
BspANI	GGCC	2 cut(s)	417, 493
BspFNI	CGCG	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	418
BspPI	GGATC	1 cut(s)	251
BspT104I	TTCGAA	1 cut(s)	483
BsrGI	TGTACA	1 cut(s)	181
BsrI	ACTGG	1 cut(s)	411
BssMI	GATC	1 cut(s)	256
Bst4CI	ACNGT	2 cut(s)	147, 252
Bst6I	CTCTTC	1 cut(s)	456
BstAPI	GCANNNNNTGC	1 cut(s)	311
BstAUI	TGTACA	1 cut(s)	181
BstBI	TTCGAA	1 cut(s)	483
BstC8I	GCNNGC	1 cut(s)	128
BstFNI	CGCG	1 cut(s)	130
BstKTI	GATC	1 cut(s)	259
BstMAI	GTCTC	1 cut(s)	460
BstMBI	GATC	1 cut(s)	256
BstMWI	GCNNNNNNNGC	2 cut(s)	311, 371
BstNSI	RCATGY	2 cut(s)	182, 505
BstSLI	GKGCMC	1 cut(s)	432
BstUI	CGCG	1 cut(s)	130
BstV1I	GCAGC	1 cut(s)	499
BstV2I	GAAGAC	1 cut(s)	480
BsuRI	GGCC	2 cut(s)	417, 493
Cac8I	GCNNGC	1 cut(s)	128
Cfr13I	GGNCC	2 cut(s)	294, 416
CseI	GACGC	1 cut(s)	344
Csp6I	GTAC	2 cut(s)	182, 234
CviAII	CATG	4 cut(s)	179, 261, 433, 502
CviJI	RGCY	7 cut(s)	95, 110, 224, 240, 247, 417, 493
CviKI_1	RGCY	7 cut(s)	95, 110, 224, 240, 247, 417, 493
CviQI	GTAC	2 cut(s)	182, 234
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
Eco47I	GGWCC	1 cut(s)	294
Eco57I	CTGAAG	2 cut(s)	117, 462
FaeI	CATG	4 cut(s)	182, 264, 436, 505
FatI	CATG	4 cut(s)	178, 260, 432, 501
Fnu4HI	GCNGC	1 cut(s)	513
Fsp4HI	GCNGC	1 cut(s)	513
FspBI	CTAG	3 cut(s)	237, 329, 470
GluI	GCNGC	1 cut(s)	513
HaeIII	GGCC	2 cut(s)	417, 493
HgaI	GACGC	1 cut(s)	344
Hin1II	CATG	4 cut(s)	182, 264, 436, 505
HinfI	GANTC	2 cut(s)	437, 520
Hpy188I	TCNGA	1 cut(s)	442
Hpy188III	TCNNGA	3 cut(s)	140, 269, 449
HpyAV	CCTTC	1 cut(s)	479
HpyCH4III	ACNGT	2 cut(s)	147, 252
HpyCH4V	TGCA	6 cut(s)	23, 178, 291, 305, 390, 515
HpyF10VI	GCNNNNNNNGC	2 cut(s)	311, 371
Hsp92II	CATG	4 cut(s)	182, 264, 436, 505
Kzo9I	GATC	1 cut(s)	256
LmnI	GCTCC	2 cut(s)	115, 352
LpnPI	CCDG	6 cut(s)	74, 153, 177, 277, 392, 411
Lsp1109I	GCAGC	1 cut(s)	499
LweI	GCATC	1 cut(s)	499
MaeI	CTAG	3 cut(s)	237, 329, 470
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MboII	GAAGA	4 cut(s)	284, 405, 473, 485
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	3 cut(s)	87, 189, 421
MlyI	GAGTC	2 cut(s)	431, 514
MnlI	CCTC	2 cut(s)	224, 343
MroXI	GAANNNNTTC	1 cut(s)	192
Mva1269I	GAATGC	1 cut(s)	159
MvnI	CGCG	1 cut(s)	130
MwoI	GCNNNNNNNGC	2 cut(s)	311, 371
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	4 cut(s)	182, 264, 436, 505
NlaIV	GGNNCC	1 cut(s)	418
NspI	RCATGY	2 cut(s)	182, 505
NspV	TTCGAA	1 cut(s)	483
PctI	GAATGC	1 cut(s)	159
PdmI	GAANNNNTTC	1 cut(s)	192
PkrI	GCNGC	1 cut(s)	514
PleI	GAGTC	2 cut(s)	431, 514
PpsI	GAGTC	2 cut(s)	431, 514
PspN4I	GGNNCC	1 cut(s)	418
PspPI	GGNCC	2 cut(s)	294, 416
PsrI	GAACNNNNNNTAC	2 cut(s)	135, 167
RsaI	GTAC	2 cut(s)	183, 235
RsaNI	GTAC	2 cut(s)	182, 234
SatI	GCNGC	1 cut(s)	513
Sau3AI	GATC	1 cut(s)	256
Sau96I	GGNCC	2 cut(s)	294, 416
SchI	GAGTC	2 cut(s)	431, 514
SduI	GDGCHC	1 cut(s)	432
SetI	ASST	5 cut(s)	34, 97, 112, 235, 290
SfaNI	GCATC	1 cut(s)	499
SfuI	TTCGAA	1 cut(s)	483
SinI	GGWCC	1 cut(s)	294
Sse9I	AATT	3 cut(s)	87, 189, 421
SsiI	CCGC	1 cut(s)	130
SspMI	CTAG	3 cut(s)	237, 329, 470
TaaI	ACNGT	2 cut(s)	147, 252
TaqI	TCGA	2 cut(s)	255, 483
TasI	AATT	3 cut(s)	87, 189, 421
TatI	WGTACW	1 cut(s)	181
TseI	GCWGC	1 cut(s)	512
TspDTI	ATGAA	2 cut(s)	297, 417
VpaK11BI	GGWCC	1 cut(s)	294
XceI	RCATGY	2 cut(s)	182, 505
XmnI	GAANNNNTTC	1 cut(s)	192
XspI	CTAG	3 cut(s)	237, 329, 470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.