Rmu_sc0007180.1_g000001

AWPM-19-like family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007180.1
N/A
Physical Location & Seq
Forward (+)
1 .. 3688
3688 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 447 bp
tgttcttgtttcagactggcttgtaaagagattgaacttggttggacaactgggaacttgcgtactttggagaccatgaccataattgtgagtgcaactcaattgttttatacttgtgccatccaagctggagttgaagtggctattgcagaacaaagggatcggattgcagcaagacctgcagcacagccccctgctactcgcctgcatctcctgccgacctcgccacagcctccagcccctgcacctgcacctgcgtccatccctgcatcgctggctcactgcagcacagcccccagcaagctgctgcgtacaaactcgcctgcaagccccgcacaccagcccaccgagcgataccagcccaggccaccgaccagcagcagcagcaccccggcctccgatctgcagcagcaccccggcctccgatctgcaacagactttgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

148

Amino Acids

15.72

Weight (kDa)

8.41

Isoelectric Point (pI)

73.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AWPM-19 PF05512 5 - 44 1.9e-11 AWPM-19-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 256, 262
Acc36I ACCTGC 3 cut(s) 187, 256, 262
AciI CCGC 1 cut(s) 333
AclWI GGATC 1 cut(s) 168
AfaI GTAC 2 cut(s) 64, 313
AgsI TTSAA 2 cut(s) 35, 137
AjnI CCWGG 1 cut(s) 362
AluBI AGCT 2 cut(s) 128, 304
AluI AGCT 2 cut(s) 128, 304
Alw26I GTCTC 1 cut(s) 65
AlwI GGATC 1 cut(s) 168
AlwNI CAGNNNCTG 1 cut(s) 242
AoxI GGCC 3 cut(s) 365, 393, 418
AsuC2I CCSGG 2 cut(s) 392, 417
BccI CCATC 2 cut(s) 128, 269
BciT130I CCWGG 1 cut(s) 364
BcnI CCSGG 2 cut(s) 392, 417
BcoDI GTCTC 1 cut(s) 65
BfmI CTRYAG 3 cut(s) 180, 283, 404
BfuAI ACCTGC 3 cut(s) 187, 256, 262
Bme1390I CCNGG 3 cut(s) 364, 392, 417
BmrFI CCNGG 3 cut(s) 364, 392, 417
BmrI ACTGGG 1 cut(s) 60
BmsI GCATC 2 cut(s) 217, 278
BmuI ACTGGG 1 cut(s) 60
BplI GAGNNNNNCTC 2 cut(s) 82, 114
BpmI CTGGAG 2 cut(s) 150, 219
BpuMI CCSGG 2 cut(s) 392, 417
BsaI GGTCTC 1 cut(s) 65
BsaJI CCNNGG 3 cut(s) 362, 390, 415
BsaXI ACNNNNNCTCC 2 cut(s) 123, 153
Bse1I ACTGG 2 cut(s) 21, 55
BseBI CCWGG 1 cut(s) 364
BseDI CCNNGG 3 cut(s) 362, 390, 415
BseGI GGATG 2 cut(s) 120, 261
BseNI ACTGG 2 cut(s) 21, 55
BseYI CCCAGC 1 cut(s) 296
BsgI GTGCAG 2 cut(s) 228, 234
BshFI GGCC 3 cut(s) 367, 395, 420
BsiSI CCGG 2 cut(s) 392, 417
BsmAI GTCTC 1 cut(s) 65
BsnI GGCC 3 cut(s) 367, 395, 420
Bso31I GGTCTC 1 cut(s) 65
Bsp143I GATC 3 cut(s) 160, 400, 425
BspACI CCGC 1 cut(s) 333
BspANI GGCC 3 cut(s) 367, 395, 420
BspMAI CTGCAG 3 cut(s) 184, 287, 408
BspMI ACCTGC 3 cut(s) 187, 256, 262
BspPI GGATC 1 cut(s) 168
BspTNI GGTCTC 1 cut(s) 65
BsrI ACTGG 2 cut(s) 21, 55
BssECI CCNNGG 3 cut(s) 362, 390, 415
BssMI GATC 3 cut(s) 160, 400, 425
Bst2UI CCWGG 1 cut(s) 364
BstAPI GCANNNNNTGC 2 cut(s) 179, 214
BstC8I GCNNGC 5 cut(s) 206, 276, 302, 324, 328
BstF5I GGATG 2 cut(s) 120, 261
BstKTI GATC 3 cut(s) 163, 403, 428
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 3 cut(s) 160, 400, 425
BstMWI GCNNNNNNNGC 9 cut(s) 125, 179, 214, 223, 275, 332, 349, 358, 384
BstNI CCWGG 1 cut(s) 364
BstSCI CCNGG 3 cut(s) 362, 390, 415
BstSFI CTRYAG 3 cut(s) 180, 283, 404
BsuRI GGCC 3 cut(s) 367, 395, 420
BtgZI GCGATG 1 cut(s) 255
BtsCI GGATG 2 cut(s) 120, 261
BtsI GCAGTG 1 cut(s) 280
BtsIMutI CAGTG 1 cut(s) 280
BveI ACCTGC 3 cut(s) 187, 256, 262
Cac8I GCNNGC 5 cut(s) 206, 276, 302, 324, 328
CaiI CAGNNNCTG 1 cut(s) 242
CseI GACGC 1 cut(s) 246
Csp6I GTAC 2 cut(s) 63, 312
CviAII CATG 1 cut(s) 76
CviQI GTAC 2 cut(s) 63, 312
DpnI GATC 3 cut(s) 162, 402, 427
DpnII GATC 3 cut(s) 160, 400, 425
Eco31I GGTCTC 1 cut(s) 65
EcoRII CCWGG 1 cut(s) 362
FaeI CATG 1 cut(s) 79
FaiI YATR 3 cut(s) 77, 83, 111
FatI CATG 1 cut(s) 75
FauI CCCGC 1 cut(s) 340
FokI GGATG 2 cut(s) 107, 248
GsaI CCCAGC 1 cut(s) 300
GsuI CTGGAG 2 cut(s) 150, 219
HaeIII GGCC 3 cut(s) 367, 395, 420
HapII CCGG 2 cut(s) 392, 417
HgaI GACGC 1 cut(s) 246
Hin1II CATG 1 cut(s) 79
HpaII CCGG 2 cut(s) 392, 417
Hpy188I TCNGA 4 cut(s) 14, 165, 400, 425
HpyF10VI GCNNNNNNNGC 9 cut(s) 125, 179, 214, 223, 275, 332, 349, 358, 384
Hsp92II CATG 1 cut(s) 79
Kzo9I GATC 3 cut(s) 160, 400, 425
LweI GCATC 2 cut(s) 217, 278
MalI GATC 3 cut(s) 162, 402, 427
MboI GATC 3 cut(s) 160, 400, 425
MfeI CAATTG 1 cut(s) 101
MluCI AATT 2 cut(s) 84, 101
MmeI TCCRAC 1 cut(s) 23
MnlI CCTC 4 cut(s) 232, 243, 406, 431
MslI CAYNNNNRTG 1 cut(s) 86
MspI CCGG 2 cut(s) 392, 417
MspR9I CCNGG 3 cut(s) 364, 392, 417
MunI CAATTG 1 cut(s) 101
MvaI CCWGG 1 cut(s) 364
MwoI GCNNNNNNNGC 9 cut(s) 125, 179, 214, 223, 275, 332, 349, 358, 384
NciI CCSGG 2 cut(s) 392, 417
NdeII GATC 3 cut(s) 160, 400, 425
NlaIII CATG 1 cut(s) 79
PaqCI CACCTGC 2 cut(s) 256, 262
Psp6I CCWGG 1 cut(s) 362
PspFI CCCAGC 1 cut(s) 296
PspGI CCWGG 1 cut(s) 362
PstI CTGCAG 3 cut(s) 184, 287, 408
PstNI CAGNNNCTG 1 cut(s) 242
RsaI GTAC 2 cut(s) 64, 313
RsaNI GTAC 2 cut(s) 63, 312
RseI CAYNNNNRTG 1 cut(s) 86
Sau3AI GATC 3 cut(s) 160, 400, 425
ScrFI CCNGG 3 cut(s) 364, 392, 417
SetI ASST 6 cut(s) 130, 181, 224, 250, 256, 306
SfaNI GCATC 2 cut(s) 217, 278
SfcI CTRYAG 3 cut(s) 180, 283, 404
SmiMI CAYNNNNRTG 1 cut(s) 86
Sse9I AATT 2 cut(s) 84, 101
SsiI CCGC 1 cut(s) 333
StyD4I CCNGG 3 cut(s) 362, 390, 415
TasI AATT 2 cut(s) 84, 101
TscAI CASTG 1 cut(s) 287
TspRI CASTG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.