Rmu_sc0007193.1_g000001

Golgin candidate

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007193.1
N/A
Physical Location & Seq
Reverse (-)
4847 .. 5529
683 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 375 bp
atgttgaaatttacttttagtttgatcaggggtaagcatgagtccagtgaagctgctaggagttctacctccgaagacttaaagagaggttttacttcagtaactgatggcagctctgagtctgactcggactccagttcaagttctgattctgaaagtgagcgtgagaaggaggaaaggagaaagcagagggagaagattctagctgagaaagcagcagctaaagctgtggaggccattaaagagaaggaaaatagggttgccagattggaaggggagaagcagagcttggagaaaatacctgaagttcaagcaacaagcacaagaggcttgaaagctacagacgactatgatgcaaaccatggaggcggctga

Protein Analysis

124

Amino Acids

13.61

Weight (kDa)

5.55

Isoelectric Point (pI)

58.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 369
AcsI RAATTY 1 cut(s) 8
AcuI CTGAAG 2 cut(s) 81, 324
AgsI TTSAA 4 cut(s) 7, 141, 311, 334
AjuI GAANNNNNNNTTGG 2 cut(s) 272, 304
AluBI AGCT 7 cut(s) 53, 114, 206, 221, 227, 288, 338
AluI AGCT 7 cut(s) 53, 114, 206, 221, 227, 288, 338
AlwNI CAGNNNCTG 1 cut(s) 104
AoxI GGCC 1 cut(s) 234
ApeKI GCWGC 4 cut(s) 53, 111, 215, 218
ApoI RAATTY 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 81
BbvI GCAGC 4 cut(s) 40, 123, 227, 230
BccI CCATC 1 cut(s) 101
BcgI CGANNNNNNTGC 2 cut(s) 335, 369
BclI TGATCA 1 cut(s) 24
BfaI CTAG 2 cut(s) 57, 203
BfmI CTRYAG 1 cut(s) 339
BisI GCNGC 5 cut(s) 54, 112, 216, 219, 370
BlsI GCNGC 5 cut(s) 55, 113, 217, 220, 371
BmsI GCATC 1 cut(s) 343
BpiI GAAGAC 1 cut(s) 81
BplI GAGNNNNNCTC 2 cut(s) 110, 142
BpmI CTGGAG 1 cut(s) 118
BsaJI CCNNGG 1 cut(s) 361
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bse1I ACTGG 2 cut(s) 45, 135
BseDI CCNNGG 1 cut(s) 361
BseMII CTCAG 2 cut(s) 108, 198
BseNI ACTGG 2 cut(s) 45, 135
BseXI GCAGC 4 cut(s) 40, 123, 227, 230
BshFI GGCC 1 cut(s) 236
BsnI GGCC 1 cut(s) 236
Bsp143I GATC 1 cut(s) 24
Bsp19I CCATGG 1 cut(s) 361
BspACI CCGC 1 cut(s) 369
BspANI GGCC 1 cut(s) 236
BspCNI CTCAG 2 cut(s) 109, 199
BsrI ACTGG 2 cut(s) 45, 135
BssECI CCNNGG 1 cut(s) 361
BssMI GATC 1 cut(s) 24
BssT1I CCWWGG 1 cut(s) 361
BstDEI CTNAG 2 cut(s) 117, 207
BstDSI CCRYGG 1 cut(s) 361
BstKTI GATC 1 cut(s) 27
BstMBI GATC 1 cut(s) 24
BstMWI GCNNNNNNNGC 4 cut(s) 212, 224, 233, 327
BstSFI CTRYAG 1 cut(s) 339
BstV1I GCAGC 4 cut(s) 40, 123, 227, 230
BstV2I GAAGAC 1 cut(s) 81
BsuRI GGCC 1 cut(s) 236
BtgI CCRYGG 1 cut(s) 361
BtsIMutI CAGTG 1 cut(s) 52
CaiI CAGNNNCTG 1 cut(s) 104
CviAII CATG 2 cut(s) 38, 362
DdeI CTNAG 2 cut(s) 117, 207
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 361
Eco57I CTGAAG 2 cut(s) 81, 324
EcoT14I CCWWGG 1 cut(s) 361
ErhI CCWWGG 1 cut(s) 361
FaeI CATG 2 cut(s) 41, 365
FaiI YATR 3 cut(s) 39, 351, 363
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FatI CATG 2 cut(s) 37, 361
FbaI TGATCA 1 cut(s) 24
Fnu4HI GCNGC 5 cut(s) 54, 112, 216, 219, 370
Fsp4HI GCNGC 5 cut(s) 54, 112, 216, 219, 370
FspBI CTAG 2 cut(s) 57, 203
GluI GCNGC 5 cut(s) 54, 112, 216, 219, 370
GsuI CTGGAG 1 cut(s) 118
HaeIII GGCC 1 cut(s) 236
Hin1II CATG 2 cut(s) 41, 365
HinfI GANTC 6 cut(s) 41, 119, 125, 131, 149, 199
Hpy188I TCNGA 6 cut(s) 73, 118, 124, 130, 148, 154
HpyAV CCTTC 3 cut(s) 163, 241, 266
HpyCH4V TGCA 1 cut(s) 356
HpyF10VI GCNNNNNNNGC 4 cut(s) 212, 224, 233, 327
HpyF3I CTNAG 2 cut(s) 117, 207
Hsp92II CATG 2 cut(s) 41, 365
Ksp22I TGATCA 1 cut(s) 24
Kzo9I GATC 1 cut(s) 24
LpnPI CCDG 5 cut(s) 13, 58, 148, 277, 315
Lsp1109I GCAGC 4 cut(s) 40, 123, 227, 230
LweI GCATC 1 cut(s) 343
MaeI CTAG 2 cut(s) 57, 203
MaeIII GTNAC 1 cut(s) 100
MalI GATC 1 cut(s) 26
MboI GATC 1 cut(s) 24
MboII GAAGA 2 cut(s) 86, 208
MluCI AATT 1 cut(s) 8
MlyI GAGTC 4 cut(s) 50, 119, 125, 128
MnlI CCTC 7 cut(s) 79, 80, 166, 183, 226, 320, 359
MseI TTAA 2 cut(s) 80, 240
MwoI GCNNNNNNNGC 4 cut(s) 212, 224, 233, 327
NcoI CCATGG 1 cut(s) 361
NdeII GATC 1 cut(s) 24
NlaIII CATG 2 cut(s) 41, 365
PfeI GAWTC 2 cut(s) 149, 199
PkrI GCNGC 5 cut(s) 55, 113, 217, 220, 371
PleI GAGTC 4 cut(s) 49, 119, 125, 127
PpsI GAGTC 4 cut(s) 49, 119, 125, 127
PstNI CAGNNNCTG 1 cut(s) 104
SaqAI TTAA 2 cut(s) 80, 240
SatI GCNGC 5 cut(s) 54, 112, 216, 219, 370
Sau3AI GATC 1 cut(s) 24
SchI GAGTC 4 cut(s) 50, 119, 125, 128
SfaNI GCATC 1 cut(s) 343
SfcI CTRYAG 1 cut(s) 339
Sse9I AATT 1 cut(s) 8
SsiI CCGC 1 cut(s) 369
SspMI CTAG 2 cut(s) 57, 203
StyI CCWWGG 1 cut(s) 361
TasI AATT 1 cut(s) 8
TauI GCSGC 1 cut(s) 372
TfiI GAWTC 2 cut(s) 149, 199
Tru1I TTAA 2 cut(s) 80, 240
Tru9I TTAA 2 cut(s) 80, 240
TscAI CASTG 1 cut(s) 52
TseI GCWGC 4 cut(s) 53, 111, 215, 218
TspRI CASTG 1 cut(s) 52
XapI RAATTY 1 cut(s) 8
XspI CTAG 2 cut(s) 57, 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.