Rmu_sc0007209.1_g000004

Amidase 1-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007209.1
N/A
Physical Location & Seq
Reverse (-)
17442 .. 23448
6007 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1692 bp
atgaataaaggaatacgcgaaaagatgttatcatctgttgagatatttagcttccttatctgtctggactttgttcctgaaacagggaatatgatcaagtttagatcaggcagtttgacacgcctcaaatcaaacatgccactcaaaatgctcattactaacacaaaagttgggaggaacacagaggccttagttgctggtgttacagagaggacattaaggcatccagatgctatggcttctgtgtttaatgcagttgattctatcagcgcagaattggctaccatcatccaattagaggcccctgatgaaatctctgtaaccaagaaggatgcgaaaatagaagacctgatggaaatgaaccagggtttgctccaatgcatgggggtcagccatgcttcaatcgaatccattcttcgaactatactcaaatacaagttggctttcaagttgacaggagctcgtggtggaggttctaactggagtcgtgtggattccattgctgaacagcggccattggtggacaaggtattcaagtttgctttggtggttcatcctgaggtgattactaatacctttttctcccttgaatttcaacttggaatcagatttgatatggctggatatgtgactggatttggaaatcctgattgggcaaggactcacccagctgctgaatcaacagctccttctgtttctacaatcttagaaggaggtgccacatgtattggtagaactatcatggatgaaatggcatacagggttcctggaggatcttctagtggctctgctgttgtagtgagtgcaggccttgcagatttttccttaggaactgacagcggaggaagtgtaagagttcctgcttcatattgtggaatttttgggttccgaccttctcatggtgtcatttctacttctggagttgttcctttggcacaaagttttgatactgtgggatggttcgctagggatcctgtggttttgagtagagtaggacgggcattactgcaaattgctgatgcacatcctgtcagaccagctcaattgatcattgctgaagactgtttccagctttcaagcattccaagtgatcgagtaaaacaaggacttgttcactcagttgagaagttatttgggggtcatgttttaaagcatgcaaaccttggggatgttgtgaaggacaaagttccaagtttgaactgtttctttgagaaaggaaagacaagtcaagaggataacataccatccttggcagccctatcaagtgccatgcgaacactcgaaagacctgatataggtcctgcggaccggataaatgaacgtgtatgggaagccgtcagggcaacagatgaaaatatcgatatttgtcactctgtgaagactgaactatgtgctgctctcactgaacttcttggggatgctggtgtccttgcaattcctacagttccagggcttccaccaaaactacatacggatcctactacacttgaaacatatcgccacagggcttttagctttttgtccattgccgtagtatctggattctgccaggtggtcataccactaggcatgtacgaaggcttaccagtgtcggtttccttgctggcaaagcacggctcagatggattcctgctcagtcttgtggagactctctatgccaccctcaaagaacaagttggaagcttgaaatga

Protein Analysis

563

Amino Acids

60.59

Weight (kDa)

6.25

Isoelectric Point (pI)

31.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Amidase PF01425 254 - 327 1.1e-28 Amidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 716
AccB7I CCANNNNNTGG 1 cut(s) 382
AccII CGCG 1 cut(s) 18
AciI CCGC 3 cut(s) 511, 840, 1304
AclWI GGATC 5 cut(s) 781, 965, 978, 1469, 1482
AcoI YGGCCR 1 cut(s) 512
AcsI RAATTY 2 cut(s) 590, 876
AcuI CTGAAG 1 cut(s) 1077
AdeI CACNNNGTG 1 cut(s) 1375
AfaI GTAC 1 cut(s) 1574
AfiI CCNNNNNNNGG 5 cut(s) 83, 298, 382, 899, 1295
AflIII ACRYGT 2 cut(s) 722, 1321
AgsI TTSAA 9 cut(s) 402, 448, 535, 590, 596, 1077, 1198, 1490, 1687
AjnI CCWGG 4 cut(s) 363, 766, 1447, 1548
AjuI GAANNNNNNNTTGG 4 cut(s) 582, 614, 634, 666
AluBI AGCT 8 cut(s) 51, 461, 671, 686, 1040, 1072, 1515, 1683
AluI AGCT 8 cut(s) 51, 461, 671, 686, 1040, 1072, 1515, 1683
Alw21I GWGCWC 1 cut(s) 463
Alw26I GTCTC 1 cut(s) 1640
AlwI GGATC 5 cut(s) 781, 965, 978, 1469, 1482
AlwNI CAGNNNCTG 1 cut(s) 674
AoxI GGCC 4 cut(s) 186, 300, 512, 808
ApeKI GCWGC 3 cut(s) 671, 1253, 1394
ApoI RAATTY 2 cut(s) 590, 876
Asp700I GAANNNNTTC 2 cut(s) 411, 1202
AspLEI GCGC 1 cut(s) 272
AspS9I GGNCC 3 cut(s) 301, 1298, 1306
AsuHPI GGTGA 2 cut(s) 574, 656
AsuII TTCGAA 1 cut(s) 418
AvaII GGWCC 2 cut(s) 1298, 1306
AxyI CCTNAGG 2 cut(s) 558, 826
BamHI GGATCC 2 cut(s) 970, 1474
BanI GGYRCC 1 cut(s) 716
BanII GRGCYC 1 cut(s) 463
BauI CACGAG 1 cut(s) 462
BbsI GAAGAC 3 cut(s) 351, 1065, 1385
Bbv12I GWGCWC 1 cut(s) 463
BbvI GCAGC 3 cut(s) 658, 1265, 1381
BccI CCATC 5 cut(s) 293, 346, 951, 1252, 1616
BceAI ACGGC 3 cut(s) 1319, 1514, 1630
BciT130I CCWGG 4 cut(s) 365, 768, 1449, 1550
BclI TGATCA 2 cut(s) 93, 1047
BcoDI GTCTC 1 cut(s) 1640
BfaI CTAG 3 cut(s) 780, 966, 1565
BfmI CTRYAG 1 cut(s) 1440
BglI GCCNNNNNGGC 1 cut(s) 1340
BisI GCNGC 4 cut(s) 512, 672, 1254, 1395
BlsI GCNGC 4 cut(s) 513, 673, 1255, 1396
Bme1390I CCNGG 4 cut(s) 365, 768, 1449, 1550
Bme18I GGWCC 2 cut(s) 1298, 1306
BmgT120I GGNCC 3 cut(s) 301, 1298, 1306
BmiI GGNNCC 6 cut(s) 303, 718, 765, 887, 972, 1476
BmrFI CCNGG 4 cut(s) 365, 768, 1449, 1550
BmsI GCATC 5 cut(s) 220, 232, 322, 1009, 1408
BpiI GAAGAC 3 cut(s) 351, 1065, 1385
BpmI CTGGAG 3 cut(s) 502, 789, 939
Bpu14I TTCGAA 1 cut(s) 418
Bsa29I ATCGAT 1 cut(s) 1359
BsaBI GATNNNNATC 1 cut(s) 1023
BsaJI CCNNGG 4 cut(s) 364, 1162, 1248, 1448
BsaWI WCCGGW 1 cut(s) 1308
BsaXI ACNNNNNCTCC 2 cut(s) 834, 864
Bsc4I CCNNNNNNNGG 5 cut(s) 83, 298, 382, 899, 1295
Bse1I ACTGG 3 cut(s) 485, 637, 1586
Bse21I CCTNAGG 2 cut(s) 558, 826
Bse3DI GCAATG 3 cut(s) 498, 1050, 1524
Bse8I GATNNNNATC 1 cut(s) 1023
BseBI CCWGG 4 cut(s) 365, 768, 1449, 1550
BseCI ATCGAT 1 cut(s) 1359
BseDI CCNNGG 4 cut(s) 364, 1162, 1248, 1448
BseJI GATNNNNATC 1 cut(s) 1023
BseLI CCNNNNNNNGG 5 cut(s) 83, 298, 382, 899, 1295
BseMI GCAATG 3 cut(s) 498, 1050, 1524
BseMII CTCAG 4 cut(s) 549, 1131, 1632, 1648
BseNI ACTGG 3 cut(s) 485, 637, 1586
BseXI GCAGC 3 cut(s) 658, 1265, 1381
BseYI CCCAGC 1 cut(s) 667
BsgI GTGCAG 1 cut(s) 825
Bsh1236I CGCG 1 cut(s) 18
BshFI GGCC 4 cut(s) 188, 302, 514, 810
BshNI GGYRCC 1 cut(s) 716
BshVI ATCGAT 1 cut(s) 1359
BsiHKAI GWGCWC 1 cut(s) 463
BsiSI CCGG 1 cut(s) 1309
BslI CCNNNNNNNGG 5 cut(s) 83, 298, 382, 899, 1295
BsmAI GTCTC 1 cut(s) 1640
BsmI GAATGC 1 cut(s) 1080
BsnI GGCC 4 cut(s) 188, 302, 514, 810
Bsp119I TTCGAA 1 cut(s) 418
Bsp1286I GDGCHC 1 cut(s) 463
Bsp143I GATC 7 cut(s) 93, 104, 773, 970, 1047, 1090, 1474
BspACI CCGC 3 cut(s) 511, 840, 1304
BspANI GGCC 4 cut(s) 188, 302, 514, 810
BspCNI CTCAG 4 cut(s) 550, 1130, 1631, 1647
BspDI ATCGAT 1 cut(s) 1359
BspFNI CGCG 1 cut(s) 18
BspLI GGNNCC 6 cut(s) 303, 718, 765, 887, 972, 1476
BspPI GGATC 5 cut(s) 781, 965, 978, 1469, 1482
BspT104I TTCGAA 1 cut(s) 418
BspT107I GGYRCC 1 cut(s) 716
BsrDI GCAATG 3 cut(s) 498, 1050, 1524
BsrI ACTGG 3 cut(s) 485, 637, 1586
BssECI CCNNGG 4 cut(s) 364, 1162, 1248, 1448
BssMI GATC 7 cut(s) 93, 104, 773, 970, 1047, 1090, 1474
BssSI CACGAG 1 cut(s) 462
BssT1I CCWWGG 2 cut(s) 1162, 1248
Bst2BI CACGAG 1 cut(s) 462
Bst2UI CCWGG 4 cut(s) 365, 768, 1449, 1550
Bst4CI ACNGT 4 cut(s) 952, 1064, 1202, 1444
BstAPI GCANNNNNTGC 1 cut(s) 812
BstBI TTCGAA 1 cut(s) 418
BstC8I GCNNGC 3 cut(s) 808, 1155, 1605
BstDEI CTNAG 7 cut(s) 190, 558, 706, 826, 1117, 1618, 1634
BstENI CCTNNNNNAGG 2 cut(s) 81, 1293
BstFNI CGCG 1 cut(s) 18
BstHHI GCGC 1 cut(s) 272
BstKTI GATC 7 cut(s) 96, 107, 776, 973, 1050, 1093, 1477
BstMAI GTCTC 1 cut(s) 1640
BstMBI GATC 7 cut(s) 93, 104, 773, 970, 1047, 1090, 1474
BstMWI GCNNNNNNNGC 5 cut(s) 194, 278, 812, 1340, 1609
BstNI CCWGG 4 cut(s) 365, 768, 1449, 1550
BstNSI RCATGY 4 cut(s) 139, 726, 1157, 1573
BstSCI CCNGG 4 cut(s) 363, 766, 1447, 1548
BstSFI CTRYAG 1 cut(s) 1440
BstUI CGCG 1 cut(s) 18
BstV1I GCAGC 3 cut(s) 658, 1265, 1381
BstV2I GAAGAC 3 cut(s) 351, 1065, 1385
BstX2I RGATCY 3 cut(s) 773, 970, 1474
BstYI RGATCY 3 cut(s) 773, 970, 1474
Bsu15I ATCGAT 1 cut(s) 1359
Bsu36I CCTNAGG 2 cut(s) 558, 826
BsuRI GGCC 4 cut(s) 188, 302, 514, 810
BsuTUI ATCGAT 1 cut(s) 1359
BtsIMutI CAGTG 2 cut(s) 1401, 1593
Cac8I GCNNGC 3 cut(s) 808, 1155, 1605
CaiI CAGNNNCTG 1 cut(s) 674
CfoI GCGC 1 cut(s) 272
Cfr13I GGNCC 3 cut(s) 301, 1298, 1306
ClaI ATCGAT 1 cut(s) 1359
CpoI CGGWCCG 1 cut(s) 1306
Csp6I GTAC 1 cut(s) 1573
CspCI CAANNNNNGTGG 2 cut(s) 709, 744
CspI CGGWCCG 1 cut(s) 1306
CviQI GTAC 1 cut(s) 1573
DdeI CTNAG 7 cut(s) 190, 558, 706, 826, 1117, 1618, 1634
DpnI GATC 7 cut(s) 95, 106, 775, 972, 1049, 1092, 1476
DpnII GATC 7 cut(s) 93, 104, 773, 970, 1047, 1090, 1474
DraI TTTAAA 1 cut(s) 1149
DraIII CACNNNGTG 1 cut(s) 1375
EaeI YGGCCR 1 cut(s) 512
Ecl136II GAGCTC 1 cut(s) 461
Eco130I CCWWGG 2 cut(s) 1162, 1248
Eco147I AGGCCT 2 cut(s) 188, 810
Eco24I GRGCYC 1 cut(s) 463
Eco47I GGWCC 2 cut(s) 1298, 1306
Eco53kI GAGCTC 1 cut(s) 461
Eco57I CTGAAG 1 cut(s) 1077
Eco81I CCTNAGG 2 cut(s) 558, 826
EcoICRI GAGCTC 1 cut(s) 461
EcoNI CCTNNNNNAGG 2 cut(s) 81, 1293
EcoO109I RGGNCCY 2 cut(s) 301, 1298
EcoRII CCWGG 4 cut(s) 363, 766, 1447, 1548
EcoT14I CCWWGG 2 cut(s) 1162, 1248
EcoT22I ATGCAT 1 cut(s) 383
EcoT38I GRGCYC 1 cut(s) 463
ErhI CCWWGG 2 cut(s) 1162, 1248
FbaI TGATCA 2 cut(s) 93, 1047
Fnu4HI GCNGC 4 cut(s) 512, 672, 1254, 1395
FriOI GRGCYC 1 cut(s) 463
Fsp4HI GCNGC 4 cut(s) 512, 672, 1254, 1395
FspBI CTAG 3 cut(s) 780, 966, 1565
GlaI GCGC 1 cut(s) 271
GluI GCNGC 4 cut(s) 512, 672, 1254, 1395
GsaI CCCAGC 1 cut(s) 671
GsuI CTGGAG 3 cut(s) 502, 789, 939
HaeIII GGCC 4 cut(s) 188, 302, 514, 810
HapII CCGG 1 cut(s) 1309
HhaI GCGC 1 cut(s) 272
Hin6I GCGC 1 cut(s) 270
HinP1I GCGC 1 cut(s) 270
HincII GTYRAC 1 cut(s) 453
HindII GTYRAC 1 cut(s) 453
HindIII AAGCTT 1 cut(s) 1681
HpaII CCGG 1 cut(s) 1309
HphI GGTGA 2 cut(s) 574, 656
Hpy166II GTNNAC 3 cut(s) 453, 523, 1114
Hpy188I TCNGA 4 cut(s) 608, 890, 1034, 1621
Hpy188III TCNNGA 8 cut(s) 65, 77, 227, 557, 647, 918, 1229, 1539
Hpy8I GTNNAC 3 cut(s) 453, 523, 1114
HpyAV CCTTC 6 cut(s) 322, 699, 704, 903, 1171, 1571
HpyCH4III ACNGT 4 cut(s) 952, 1064, 1202, 1444
HpyCH4IV ACGT 1 cut(s) 1321
HpyCH4V TGCA 8 cut(s) 254, 381, 806, 815, 1009, 1022, 1157, 1433
HpyF10VI GCNNNNNNNGC 5 cut(s) 194, 278, 812, 1340, 1609
HpyF3I CTNAG 7 cut(s) 190, 558, 706, 826, 1117, 1618, 1634
HpySE526I ACGT 1 cut(s) 1321
HspAI GCGC 1 cut(s) 270
Ksp22I TGATCA 2 cut(s) 93, 1047
Kzo9I GATC 7 cut(s) 93, 104, 773, 970, 1047, 1090, 1474
LmnI GCTCC 3 cut(s) 378, 458, 691
Lsp1109I GCAGC 3 cut(s) 658, 1265, 1381
LweI GCATC 5 cut(s) 220, 232, 322, 1009, 1408
MaeI CTAG 3 cut(s) 780, 966, 1565
MaeII ACGT 1 cut(s) 1321
MaeIII GTNAC 4 cut(s) 202, 319, 628, 1367
MalI GATC 7 cut(s) 95, 106, 775, 972, 1049, 1092, 1476
MboI GATC 7 cut(s) 93, 104, 773, 970, 1047, 1090, 1474
MboII GAAGA 5 cut(s) 356, 407, 768, 1070, 1390
MfeI CAATTG 1 cut(s) 1043
MflI RGATCY 3 cut(s) 773, 970, 1474
MhlI GDGCHC 1 cut(s) 463
MluCI AATT 7 cut(s) 275, 293, 590, 876, 1011, 1043, 1434
MlyI GAGTC 3 cut(s) 493, 655, 1642
MmeI TCCRAC 2 cut(s) 913, 1657
Mph1103I ATGCAT 1 cut(s) 383
MroXI GAANNNNTTC 2 cut(s) 411, 1202
MseI TTAA 3 cut(s) 218, 249, 1148
MslI CAYNNNNRTG 1 cut(s) 228
MspA1I CMGCKG 3 cut(s) 511, 671, 840
MspI CCGG 1 cut(s) 1309
MspR9I CCNGG 4 cut(s) 365, 768, 1449, 1550
MunI CAATTG 1 cut(s) 1043
Mva1269I GAATGC 1 cut(s) 1080
MvaI CCWGG 4 cut(s) 365, 768, 1449, 1550
MvnI CGCG 1 cut(s) 18
MwoI GCNNNNNNNGC 5 cut(s) 194, 278, 812, 1340, 1609
NdeII GATC 7 cut(s) 93, 104, 773, 970, 1047, 1090, 1474
NlaIV GGNNCC 6 cut(s) 303, 718, 765, 887, 972, 1476
NmuCI GTSAC 2 cut(s) 628, 1367
NsiI ATGCAT 1 cut(s) 383
NspI RCATGY 4 cut(s) 139, 726, 1157, 1573
NspV TTCGAA 1 cut(s) 418
PaeI GCATGC 1 cut(s) 1157
PceI AGGCCT 2 cut(s) 188, 810
PciI ACATGT 1 cut(s) 722
PctI GAATGC 1 cut(s) 1080
PdmI GAANNNNTTC 2 cut(s) 411, 1202
PfeI GAWTC 7 cut(s) 260, 407, 494, 603, 677, 1542, 1626
PflMI CCANNNNNTGG 1 cut(s) 382
PfoI TCCNGGA 1 cut(s) 766
PkrI GCNGC 4 cut(s) 513, 673, 1255, 1396
PleI GAGTC 3 cut(s) 492, 655, 1642
PpsI GAGTC 3 cut(s) 492, 655, 1642
PpuMI RGGWCCY 1 cut(s) 1298
PscI ACATGT 1 cut(s) 722
Psp124BI GAGCTC 1 cut(s) 463
Psp5II RGGWCCY 1 cut(s) 1298
Psp6I CCWGG 4 cut(s) 363, 766, 1447, 1548
PspFI CCCAGC 1 cut(s) 667
PspGI CCWGG 4 cut(s) 363, 766, 1447, 1548
PspN4I GGNNCC 6 cut(s) 303, 718, 765, 887, 972, 1476
PspPI GGNCC 3 cut(s) 301, 1298, 1306
PspPPI RGGWCCY 1 cut(s) 1298
PstNI CAGNNNCTG 1 cut(s) 674
PsuI RGATCY 3 cut(s) 773, 970, 1474
PvuII CAGCTG 1 cut(s) 671
RsaI GTAC 1 cut(s) 1574
RsaNI GTAC 1 cut(s) 1573
RseI CAYNNNNRTG 1 cut(s) 228
Rsr2I CGGWCCG 1 cut(s) 1306
RsrII CGGWCCG 1 cut(s) 1306
SacI GAGCTC 1 cut(s) 463
SaqAI TTAA 3 cut(s) 218, 249, 1148
SatI GCNGC 4 cut(s) 512, 672, 1254, 1395
Sau3AI GATC 7 cut(s) 93, 104, 773, 970, 1047, 1090, 1474
Sau96I GGNCC 3 cut(s) 301, 1298, 1306
SchI GAGTC 3 cut(s) 493, 655, 1642
ScrFI CCNGG 4 cut(s) 365, 768, 1449, 1550
SduI GDGCHC 1 cut(s) 463
SfaNI GCATC 5 cut(s) 220, 232, 322, 1009, 1408
SfcI CTRYAG 1 cut(s) 1440
SfuI TTCGAA 1 cut(s) 418
SinI GGWCC 2 cut(s) 1298, 1306
SmiMI CAYNNNNRTG 1 cut(s) 228
SphI GCATGC 1 cut(s) 1157
Sse9I AATT 7 cut(s) 275, 293, 590, 876, 1011, 1043, 1434
SseBI AGGCCT 2 cut(s) 188, 810
SsiI CCGC 3 cut(s) 511, 840, 1304
SspMI CTAG 3 cut(s) 780, 966, 1565
SstI GAGCTC 1 cut(s) 463
StuI AGGCCT 2 cut(s) 188, 810
StyD4I CCNGG 4 cut(s) 363, 766, 1447, 1548
StyI CCWWGG 2 cut(s) 1162, 1248
TaaI ACNGT 4 cut(s) 952, 1064, 1202, 1444
TaiI ACGT 1 cut(s) 1324
TaqI TCGA 5 cut(s) 405, 418, 1093, 1281, 1359
TasI AATT 7 cut(s) 275, 293, 590, 876, 1011, 1043, 1434
TauI GCSGC 1 cut(s) 514
TfiI GAWTC 7 cut(s) 260, 407, 494, 603, 677, 1542, 1626
Tru1I TTAA 3 cut(s) 218, 249, 1148
Tru9I TTAA 3 cut(s) 218, 249, 1148
TscAI CASTG 2 cut(s) 1408, 1593
TseFI GTSAC 2 cut(s) 628, 1367
TseI GCWGC 3 cut(s) 671, 1253, 1394
Tsp45I GTSAC 2 cut(s) 628, 1367
TspDTI ATGAA 8 cut(s) 17, 324, 374, 542, 762, 855, 1332, 1365
TspGWI ACGGA 1 cut(s) 1487
TspRI CASTG 2 cut(s) 1408, 1593
Van91I CCANNNNNTGG 1 cut(s) 382
VpaK11BI GGWCC 2 cut(s) 1298, 1306
XagI CCTNNNNNAGG 2 cut(s) 81, 1293
XapI RAATTY 2 cut(s) 590, 876
XceI RCATGY 4 cut(s) 139, 726, 1157, 1573
XmnI GAANNNNTTC 2 cut(s) 411, 1202
XspI CTAG 3 cut(s) 780, 966, 1565
Zsp2I ATGCAT 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.