Rmu_sc0007232.1_g000008

Indole-3-acetic acid-induced protein ARG7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007232.1
N/A
Physical Location & Seq
Forward (+)
26532 .. 27252
721 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 432 bp
atgacacccaatacgaggaagacgaagaggatgaagaagatgaagtcatcgtgtttgacaagctcggcgtcgttgcgagctgctgatgatgatgactgtttggatatggatctggagaccttccgctcgaacgaaggagctgaagtagtggcttggctgttgggactgttgttgtcttcaacctcacccactacgatcgaactggcccggaccaattacttctggctcggtctcgctggacatgtggccatctgcattggcaatggcgcctactacaccagattcatcatgctcgcgtcatacttgaaccacaccgggttcaagatgctcattgtacaagtcgaggaggagtacggcttcaccaaccaaggtccgctagcgatcccattcgacgagtcactcttcgaagaggtggttcggtacatttcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

143

Amino Acids

16.02

Weight (kDa)

5.14

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 79 - 142 1.7e-14 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 266
AccBSI CCGCTC 1 cut(s) 126
AccII CGCG 1 cut(s) 296
AciI CCGC 2 cut(s) 124, 374
AclWI GGATC 2 cut(s) 117, 376
AcoI YGGCCR 1 cut(s) 246
AcuI CTGAAG 1 cut(s) 162
AcyI GRCGYC 2 cut(s) 68, 267
AfaI GTAC 3 cut(s) 336, 353, 422
AfiI CCNNNNNNNGG 1 cut(s) 15
AflIII ACRYGT 1 cut(s) 241
AgsI TTSAA 3 cut(s) 180, 307, 322
AluBI AGCT 3 cut(s) 63, 80, 140
AluI AGCT 3 cut(s) 63, 80, 140
Alw26I GTCTC 2 cut(s) 110, 236
AlwI GGATC 2 cut(s) 117, 376
AoxI GGCC 2 cut(s) 204, 246
ApeKI GCWGC 1 cut(s) 80
AspLEI GCGC 1 cut(s) 269
AspS9I GGNCC 3 cut(s) 205, 210, 371
AsuC2I CCSGG 2 cut(s) 208, 316
AsuHPI GGTGA 2 cut(s) 177, 352
AsuII TTCGAA 1 cut(s) 405
AsuNHI GCTAGC 1 cut(s) 376
AvaII GGWCC 2 cut(s) 210, 371
BalI TGGCCA 1 cut(s) 248
BanI GGYRCC 1 cut(s) 266
BbsI GAAGAC 2 cut(s) 26, 168
BbvI GCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 257
BceAI ACGGC 1 cut(s) 370
BcnI CCSGG 2 cut(s) 208, 316
BcoDI GTCTC 2 cut(s) 110, 236
BfaI CTAG 1 cut(s) 377
BfoI RGCGCY 1 cut(s) 270
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 2 cut(s) 208, 316
Bme18I GGWCC 2 cut(s) 210, 371
BmgT120I GGNCC 3 cut(s) 205, 210, 371
BmiI GGNNCC 1 cut(s) 268
BmrFI CCNGG 2 cut(s) 208, 316
BmsI GCATC 1 cut(s) 315
BmtI GCTAGC 1 cut(s) 380
BpiI GAAGAC 2 cut(s) 26, 168
BpmI CTGGAG 1 cut(s) 134
Bpu14I TTCGAA 1 cut(s) 405
BpuMI CCSGG 2 cut(s) 208, 316
BsaBI GATNNNNATC 1 cut(s) 108
BsaHI GRCGYC 2 cut(s) 68, 267
BsaI GGTCTC 2 cut(s) 110, 236
BsaJI CCNNGG 1 cut(s) 367
BsaXI ACNNNNNCTCC 2 cut(s) 129, 159
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 207
Bse3DI GCAATG 1 cut(s) 268
Bse8I GATNNNNATC 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 367
BseGI GGATG 1 cut(s) 36
BseJI GATNNNNATC 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 15
BseMI GCAATG 1 cut(s) 268
BseNI ACTGG 1 cut(s) 207
BseRI GAGGAG 2 cut(s) 359, 362
BseXI GCAGC 1 cut(s) 67
Bsh1236I CGCG 1 cut(s) 296
Bsh1285I CGRYCG 1 cut(s) 198
BshFI GGCC 2 cut(s) 206, 248
BshNI GGYRCC 1 cut(s) 266
BsiEI CGRYCG 1 cut(s) 198
BsiSI CCGG 2 cut(s) 208, 315
BslFI GGGAC 1 cut(s) 177
BslI CCNNNNNNNGG 1 cut(s) 15
BsmAI GTCTC 2 cut(s) 110, 236
BsmFI GGGAC 1 cut(s) 177
BsnI GGCC 2 cut(s) 206, 248
Bso31I GGTCTC 2 cut(s) 110, 236
Bsp119I TTCGAA 1 cut(s) 405
Bsp1407I TGTACA 1 cut(s) 334
Bsp143I GATC 3 cut(s) 109, 195, 381
BspACI CCGC 2 cut(s) 124, 374
BspANI GGCC 2 cut(s) 206, 248
BspFNI CGCG 1 cut(s) 296
BspLI GGNNCC 1 cut(s) 268
BspOI GCTAGC 1 cut(s) 380
BspPI GGATC 2 cut(s) 117, 376
BspT104I TTCGAA 1 cut(s) 405
BspT107I GGYRCC 1 cut(s) 266
BspTNI GGTCTC 2 cut(s) 110, 236
BsrBI CCGCTC 1 cut(s) 126
BsrDI GCAATG 1 cut(s) 268
BsrGI TGTACA 1 cut(s) 334
BsrI ACTGG 1 cut(s) 207
BssECI CCNNGG 1 cut(s) 367
BssMI GATC 3 cut(s) 109, 195, 381
BssNI GRCGYC 2 cut(s) 68, 267
BssT1I CCWWGG 1 cut(s) 367
Bst4CI ACNGT 2 cut(s) 98, 168
Bst6I CTCTTC 3 cut(s) 20, 402, 407
BstACI GRCGYC 2 cut(s) 68, 267
BstAUI TGTACA 1 cut(s) 334
BstBI TTCGAA 1 cut(s) 405
BstC8I GCNNGC 3 cut(s) 78, 294, 378
BstF5I GGATG 1 cut(s) 36
BstFNI CGCG 1 cut(s) 296
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 1 cut(s) 269
BstKTI GATC 3 cut(s) 112, 198, 384
BstMAI GTCTC 2 cut(s) 110, 236
BstMBI GATC 3 cut(s) 109, 195, 381
BstMCI CGRYCG 1 cut(s) 198
BstNSI RCATGY 1 cut(s) 245
BstSCI CCNGG 2 cut(s) 206, 314
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 1 cut(s) 67
BstV2I GAAGAC 2 cut(s) 26, 168
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BsuRI GGCC 2 cut(s) 206, 248
BtsCI GGATG 1 cut(s) 36
Cac8I GCNNGC 3 cut(s) 78, 294, 378
CfoI GCGC 1 cut(s) 269
Cfr13I GGNCC 3 cut(s) 205, 210, 371
CseI GACGC 2 cut(s) 57, 285
Csp6I GTAC 3 cut(s) 335, 352, 421
CviAII CATG 2 cut(s) 242, 289
CviJI RGCY 9 cut(s) 63, 80, 140, 152, 157, 206, 226, 248, 357
CviKI_1 RGCY 9 cut(s) 63, 80, 140, 152, 157, 206, 226, 248, 357
CviQI GTAC 3 cut(s) 335, 352, 421
DinI GGCGCC 1 cut(s) 268
DpnI GATC 3 cut(s) 111, 197, 383
DpnII GATC 3 cut(s) 109, 195, 381
EaeI YGGCCR 1 cut(s) 246
Eam1104I CTCTTC 3 cut(s) 20, 402, 407
EarI CTCTTC 3 cut(s) 20, 402, 407
Eco130I CCWWGG 1 cut(s) 367
Eco31I GGTCTC 2 cut(s) 110, 236
Eco47I GGWCC 2 cut(s) 210, 371
Eco57I CTGAAG 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 367
EgeI GGCGCC 1 cut(s) 268
EheI GGCGCC 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 367
FaeI CATG 2 cut(s) 245, 292
FaiI YATR 4 cut(s) 107, 243, 290, 301
FaqI GGGAC 1 cut(s) 177
FatI CATG 2 cut(s) 241, 288
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 1 cut(s) 43
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 1 cut(s) 377
GlaI GCGC 1 cut(s) 268
GluI GCNGC 1 cut(s) 81
GsuI CTGGAG 1 cut(s) 134
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 2 cut(s) 206, 248
HapII CCGG 2 cut(s) 208, 315
HgaI GACGC 2 cut(s) 57, 285
HhaI GCGC 1 cut(s) 269
Hin1I GRCGYC 2 cut(s) 68, 267
Hin1II CATG 2 cut(s) 245, 292
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HinfI GANTC 2 cut(s) 282, 395
HpaII CCGG 2 cut(s) 208, 315
HphI GGTGA 2 cut(s) 177, 352
Hpy188III TCNNGA 3 cut(s) 113, 322, 429
Hpy99I CGWCG 2 cut(s) 73, 395
HpyAV CCTTC 2 cut(s) 128, 130
HpyCH4III ACNGT 2 cut(s) 98, 168
HpyCH4V TGCA 1 cut(s) 255
Hsp92I GRCGYC 2 cut(s) 68, 267
Hsp92II CATG 2 cut(s) 245, 292
HspAI GCGC 1 cut(s) 267
KasI GGCGCC 1 cut(s) 266
Kzo9I GATC 3 cut(s) 109, 195, 381
LmnI GCTCC 1 cut(s) 137
LpnPI CCDG 7 cut(s) 98, 188, 208, 221, 222, 292, 328
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 1 cut(s) 315
MaeI CTAG 1 cut(s) 377
MaeIII GTNAC 1 cut(s) 396
MalI GATC 3 cut(s) 111, 197, 383
MbiI CCGCTC 1 cut(s) 126
MboI GATC 3 cut(s) 109, 195, 381
MboII GAAGA 7 cut(s) 31, 37, 46, 49, 168, 394, 419
MflI RGATCY 1 cut(s) 109
MlsI TGGCCA 1 cut(s) 248
MluCI AATT 1 cut(s) 214
MluNI TGGCCA 1 cut(s) 248
Mly113I GGCGCC 1 cut(s) 267
MlyI GAGTC 1 cut(s) 404
MnlI CCTC 6 cut(s) 9, 21, 193, 337, 340, 403
Mox20I TGGCCA 1 cut(s) 248
MscI TGGCCA 1 cut(s) 248
Msp20I TGGCCA 1 cut(s) 248
MspI CCGG 2 cut(s) 208, 315
MspR9I CCNGG 2 cut(s) 208, 316
MvnI CGCG 1 cut(s) 296
NarI GGCGCC 1 cut(s) 267
NciI CCSGG 2 cut(s) 208, 316
NdeII GATC 3 cut(s) 109, 195, 381
NheI GCTAGC 1 cut(s) 376
NlaIII CATG 2 cut(s) 245, 292
NlaIV GGNNCC 1 cut(s) 268
NmeAIII GCCGAG 1 cut(s) 44
NmuCI GTSAC 1 cut(s) 396
NspI RCATGY 1 cut(s) 245
NspV TTCGAA 1 cut(s) 405
PciI ACATGT 1 cut(s) 241
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PfeI GAWTC 1 cut(s) 282
PkrI GCNGC 1 cut(s) 82
Ple19I CGATCG 1 cut(s) 198
PleI GAGTC 1 cut(s) 403
PluTI GGCGCC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 403
PscI ACATGT 1 cut(s) 241
PspN4I GGNNCC 1 cut(s) 268
PspPI GGNCC 3 cut(s) 205, 210, 371
PsuI RGATCY 1 cut(s) 109
PvuI CGATCG 1 cut(s) 198
RsaI GTAC 3 cut(s) 336, 353, 422
RsaNI GTAC 3 cut(s) 335, 352, 421
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 3 cut(s) 109, 195, 381
Sau96I GGNCC 3 cut(s) 205, 210, 371
SchI GAGTC 1 cut(s) 404
ScrFI CCNGG 2 cut(s) 208, 316
SetI ASST 7 cut(s) 65, 82, 122, 142, 185, 373, 414
SfaNI GCATC 1 cut(s) 315
SfoI GGCGCC 1 cut(s) 268
SfuI TTCGAA 1 cut(s) 405
SinI GGWCC 2 cut(s) 210, 371
Sse9I AATT 1 cut(s) 214
SsiI CCGC 2 cut(s) 124, 374
SspDI GGCGCC 1 cut(s) 266
SspMI CTAG 1 cut(s) 377
StyD4I CCNGG 2 cut(s) 206, 314
StyI CCWWGG 1 cut(s) 367
TaaI ACNGT 2 cut(s) 98, 168
TaqI TCGA 5 cut(s) 128, 198, 342, 390, 405
TaqII GACCGA 1 cut(s) 218
TasI AATT 1 cut(s) 214
TatI WGTACW 1 cut(s) 334
TfiI GAWTC 1 cut(s) 282
TseFI GTSAC 1 cut(s) 396
TseI GCWGC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 396
TspDTI ATGAA 3 cut(s) 47, 56, 274
VpaK11BI GGWCC 2 cut(s) 210, 371
XceI RCATGY 1 cut(s) 245
XspI CTAG 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.