Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007300.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

108694 .. 109155

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atgaagaagttcattaagggcatgataaccaaactcgagaactatgacaatgaagagcatgacgaggaagaggaaatggagatgtgcatggctttagcgtttcttaaagagaagatcgaagaggacgaagagtgggcaaggctagttatggaaatagaatatgagaacgatgaagagatttatgccggacaataccgtggtatcattcccgatggcgggattctcatcagtggctgccagacccaccaaacttctgctgatgcaaatcctacaggagatccagacgaagcttatggagctcttactaatgcaatgctgaccatacttgaggaaacagatggtgaaatttcataccaagaccttgtttacaggacaaggcagattctgtcagaaacgggttactcccagcgacctgggctttattgcagtgaccaatacgtcgatactcagtttttgggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006508 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009314 GO:0009411 GO:0009416 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009636 GO:0009987 GO:0010035 GO:0010225 GO:0010421 GO:0010467 GO:0010941 GO:0010942 GO:0012501 GO:0016020 GO:0016485 GO:0016540 GO:0016787 GO:0019538 GO:0030054 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0036473 GO:0036474 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051604 GO:0051716 GO:0055044 GO:0065007 GO:0070011 GO:0070301 GO:0070887 GO:0071236 GO:0071704 GO:0071944 GO:0097237 GO:0097468 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C14

Protein Analysis

153

Amino Acids

17.54

Weight (kDa)

4.09

Isoelectric Point (pI)

33.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C14	PF00656	38 - 144	2e-08	Caspase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	437
AciI	CCGC	1 cut(s)	216
AclWI	GGATC	1 cut(s)	272
AcsI	RAATTY	1 cut(s)	345
AfiI	CCNNNNNNNGG	2 cut(s)	215, 216
AjnI	CCWGG	1 cut(s)	412
AluBI	AGCT	2 cut(s)	290, 299
AluI	AGCT	2 cut(s)	290, 299
Alw21I	GWGCWC	1 cut(s)	301
AlwI	GGATC	1 cut(s)	272
AlwNI	CAGNNNCTG	2 cut(s)	234, 385
Ama87I	CYCGRG	1 cut(s)	35
ApeKI	GCWGC	1 cut(s)	234
ApoI	RAATTY	1 cut(s)	345
Asp700I	GAANNNNTTC	1 cut(s)	8
AsuHPI	GGTGA	1 cut(s)	353
AvaI	CYCGRG	1 cut(s)	35
BaeI	ACNNNNGTAYC	2 cut(s)	184, 217
BanII	GRGCYC	1 cut(s)	301
Bbv12I	GWGCWC	1 cut(s)	301
BbvI	GCAGC	1 cut(s)	221
BccI	CCATC	2 cut(s)	206, 332
BciT130I	CCWGG	1 cut(s)	414
BfaI	CTAG	1 cut(s)	143
BfmI	CTRYAG	1 cut(s)	270
BisI	GCNGC	1 cut(s)	235
BlsI	GCNGC	1 cut(s)	236
Bme1390I	CCNGG	1 cut(s)	414
BmeT110I	CYCGRG	1 cut(s)	35
BmrFI	CCNGG	1 cut(s)	414
BmsI	GCATC	1 cut(s)	250
BpuEI	CTTGAG	1 cut(s)	347
BsaBI	GATNNNNATC	2 cut(s)	224, 264
BsaJI	CCNNGG	2 cut(s)	196, 413
Bsc4I	CCNNNNNNNGG	2 cut(s)	215, 216
Bse3DI	GCAATG	1 cut(s)	318
Bse8I	GATNNNNATC	2 cut(s)	224, 264
BseBI	CCWGG	1 cut(s)	414
BseDI	CCNNGG	2 cut(s)	196, 413
BseJI	GATNNNNATC	2 cut(s)	224, 264
BseLI	CCNNNNNNNGG	2 cut(s)	215, 216
BseMI	GCAATG	1 cut(s)	318
BseMII	CTCAG	1 cut(s)	461
BseXI	GCAGC	1 cut(s)	221
BseYI	CCCAGC	1 cut(s)	405
BsiHKAI	GWGCWC	1 cut(s)	301
BsiHKCI	CYCGRG	1 cut(s)	35
BsiSI	CCGG	1 cut(s)	186
BslI	CCNNNNNNNGG	2 cut(s)	215, 216
BsoBI	CYCGRG	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	301
Bsp143I	GATC	2 cut(s)	114, 277
BspACI	CCGC	1 cut(s)	216
BspCNI	CTCAG	1 cut(s)	460
BspPI	GGATC	1 cut(s)	272
BspQI	GCTCTTC	1 cut(s)	48
BsrDI	GCAATG	1 cut(s)	318
BssECI	CCNNGG	2 cut(s)	196, 413
BssMI	GATC	2 cut(s)	114, 277
Bst2UI	CCWGG	1 cut(s)	414
Bst4CI	ACNGT	1 cut(s)	197
Bst6I	CTCTTC	5 cut(s)	48, 63, 114, 123, 168
BstDEI	CTNAG	1 cut(s)	447
BstDSI	CCRYGG	1 cut(s)	196
BstKTI	GATC	2 cut(s)	117, 280
BstMBI	GATC	2 cut(s)	114, 277
BstMWI	GCNNNNNNNGC	2 cut(s)	296, 415
BstNI	CCWGG	1 cut(s)	414
BstSCI	CCNGG	1 cut(s)	412
BstSFI	CTRYAG	1 cut(s)	270
BstV1I	GCAGC	1 cut(s)	221
BstX2I	RGATCY	1 cut(s)	277
BstXI	CCANNNNNNTGG	1 cut(s)	413
BstYI	RGATCY	1 cut(s)	277
BtgI	CCRYGG	1 cut(s)	196
BtsI	GCAGTG	1 cut(s)	433
BtsIMutI	CAGTG	2 cut(s)	235, 433
CaiI	CAGNNNCTG	2 cut(s)	234, 385
CviAII	CATG	3 cut(s)	22, 59, 88
CviJI	RGCY	7 cut(s)	92, 142, 234, 290, 299, 418, 459
CviKI_1	RGCY	7 cut(s)	92, 142, 234, 290, 299, 418, 459
DdeI	CTNAG	1 cut(s)	447
DpnI	GATC	2 cut(s)	116, 279
DpnII	GATC	2 cut(s)	114, 277
DrdI	GACNNNNNNGTC	1 cut(s)	437
DseDI	GACNNNNNNGTC	1 cut(s)	437
Eam1104I	CTCTTC	5 cut(s)	48, 63, 114, 123, 168
EarI	CTCTTC	5 cut(s)	48, 63, 114, 123, 168
Ecl136II	GAGCTC	1 cut(s)	299
Eco24I	GRGCYC	1 cut(s)	301
Eco53kI	GAGCTC	1 cut(s)	299
Eco88I	CYCGRG	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	412
EcoT38I	GRGCYC	1 cut(s)	301
FaeI	CATG	3 cut(s)	25, 62, 91
FatI	CATG	3 cut(s)	21, 58, 87
FauI	CCCGC	1 cut(s)	209
Fnu4HI	GCNGC	1 cut(s)	235
FriOI	GRGCYC	1 cut(s)	301
Fsp4HI	GCNGC	1 cut(s)	235
FspBI	CTAG	1 cut(s)	143
GluI	GCNGC	1 cut(s)	235
GsaI	CCCAGC	1 cut(s)	409
HapII	CCGG	1 cut(s)	186
Hin1II	CATG	3 cut(s)	25, 62, 91
HindIII	AAGCTT	1 cut(s)	288
HinfI	GANTC	2 cut(s)	220, 382
HpaII	CCGG	1 cut(s)	186
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	1 cut(s)	391
Hpy188III	TCNNGA	3 cut(s)	37, 209, 281
Hpy8I	GTNNAC	1 cut(s)	367
Hpy99I	CGWCG	1 cut(s)	443
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4IV	ACGT	1 cut(s)	438
HpyCH4V	TGCA	4 cut(s)	87, 263, 311, 426
HpyF10VI	GCNNNNNNNGC	2 cut(s)	296, 415
HpyF3I	CTNAG	1 cut(s)	447
HpySE526I	ACGT	1 cut(s)	438
Hsp92II	CATG	3 cut(s)	25, 62, 91
Kzo9I	GATC	2 cut(s)	114, 277
LguI	GCTCTTC	1 cut(s)	48
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	8 cut(s)	199, 251, 258, 294, 355, 399, 419, 426
Lsp1109I	GCAGC	1 cut(s)	221
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	1 cut(s)	143
MaeII	ACGT	1 cut(s)	438
MaeIII	GTNAC	2 cut(s)	398, 428
MalI	GATC	2 cut(s)	116, 279
MboI	GATC	2 cut(s)	114, 277
MboII	GAAGA	7 cut(s)	16, 65, 80, 124, 131, 140, 185
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	1 cut(s)	301
MluCI	AATT	1 cut(s)	345
MnlI	CCTC	4 cut(s)	58, 64, 115, 322
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	2 cut(s)	15, 105
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	1 cut(s)	414
MvaI	CCWGG	1 cut(s)	414
MwoI	GCNNNNNNNGC	2 cut(s)	296, 415
NdeII	GATC	2 cut(s)	114, 277
NlaIII	CATG	3 cut(s)	25, 62, 91
NmuCI	GTSAC	1 cut(s)	428
PaeR7I	CTCGAG	1 cut(s)	35
PciSI	GCTCTTC	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	220, 382
PkrI	GCNGC	1 cut(s)	236
Psp124BI	GAGCTC	1 cut(s)	301
Psp6I	CCWGG	1 cut(s)	412
PspFI	CCCAGC	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	412
PstNI	CAGNNNCTG	2 cut(s)	234, 385
PsuI	RGATCY	1 cut(s)	277
SacI	GAGCTC	1 cut(s)	301
SapI	GCTCTTC	1 cut(s)	48
SaqAI	TTAA	2 cut(s)	15, 105
SatI	GCNGC	1 cut(s)	235
Sau3AI	GATC	2 cut(s)	114, 277
ScrFI	CCNGG	1 cut(s)	414
SduI	GDGCHC	1 cut(s)	301
SetI	ASST	5 cut(s)	292, 301, 363, 415, 441
SfaNI	GCATC	1 cut(s)	250
SfcI	CTRYAG	1 cut(s)	270
Sfr274I	CTCGAG	1 cut(s)	35
SlaI	CTCGAG	1 cut(s)	35
SmlI	CTYRAG	2 cut(s)	35, 326
SmoI	CTYRAG	2 cut(s)	35, 326
Sse9I	AATT	1 cut(s)	345
SsiI	CCGC	1 cut(s)	216
SspMI	CTAG	1 cut(s)	143
SstI	GAGCTC	1 cut(s)	301
StyD4I	CCNGG	1 cut(s)	412
TaaI	ACNGT	1 cut(s)	197
TaiI	ACGT	1 cut(s)	441
TaqI	TCGA	3 cut(s)	36, 117, 441
TasI	AATT	1 cut(s)	345
TfiI	GAWTC	2 cut(s)	220, 382
Tru1I	TTAA	2 cut(s)	15, 105
Tru9I	TTAA	2 cut(s)	15, 105
TscAI	CASTG	2 cut(s)	235, 433
TseFI	GTSAC	1 cut(s)	428
TseI	GCWGC	1 cut(s)	234
Tsp45I	GTSAC	1 cut(s)	428
TspDTI	ATGAA	4 cut(s)	17, 66, 186, 339
TspRI	CASTG	2 cut(s)	235, 433
XapI	RAATTY	1 cut(s)	345
XhoI	CTCGAG	1 cut(s)	35
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.