Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007364.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

21235 .. 23629

Gene Structure 2395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

atgctggggtatgatttagttgttgttgatgccatgcataaggcaacctatgcaagtagaatttgtcacttgtgccgacctaattttgaagcaaaagttactgctgtagatgatcgttaccagattggaatctacactgtacgtaagattcaatacggtgaagagatcacattggactacaactctattaaggagagtaaggaagaatatgaagcatcagattgtttgtgcggcagtcaagtttgccggggaggttacctgaatttgataggcgaaggatcattcttggagggtcaaacatatgctgcatatgctccacaagatggcaattggattgctcgtattgcaacattgcttgtgggtgaggaaagaacacaatcttgtatagcttatgaaattggaaggcttcgttcaatgaaatgtttaaatgcttataaaattctcaaacgcttatgcctccgcgacacccccgagctccgtgctcctgagctccaccctcccaagcttcccgctcacaagcttcaactcacgccttcgcgacaaccccgagcttccctctcacgagctttcgctcacgccttcgaggcaccccggagcttcccgctcacgagcttcagctcacgccttcggtcaaccccgagcttccactcacgccttcgcagcaactctgaacttctgctcaagccttcccggcaaccccgaactacccgctcaggccttcgctgcacccccgagcttccgctcacgcctttgcggcaacctcgagcttccgctcactccttagcggtactcccgagcttcccgctcacgccttcgctgcacccccgagcttcccactcacgagcttccactcactcctccgcggcacgcccgagcttcccgctcacgagcttcctctcacgccttcgctacaaccccgagcttccgctcacgccttcgcgacaaccccgagcttccgctcacgccttcccggcaacccacgagcttccctctcacgccttcccggcacccctgagcttctcgctcacgccttctcggcaacccacgagcttcccgcttactaattcccgctcacgccttcacgacacccccgagcttcccgcttactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0042800 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051276 GO:0051568 GO:0061458 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

369

Amino Acids

41.27

Weight (kDa)

9.76

Isoelectric Point (pI)

61.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SET	PF00856	8 - 61	2.5e-08	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	435
AccB1I	GGYRCC	2 cut(s)	586, 1006
AccB7I	CCANNNNNTGG	1 cut(s)	323
AccII	CGCG	4 cut(s)	462, 538, 863, 940
AclWI	GGATC	1 cut(s)	286
AcsI	RAATTY	3 cut(s)	60, 262, 438
AcuI	CTGAAG	1 cut(s)	598
AfaI	GTAC	2 cut(s)	141, 789
AfiI	CCNNNNNNNGG	1 cut(s)	323
AgsI	TTSAA	4 cut(s)	89, 152, 414, 524
Alw21I	GWGCWC	3 cut(s)	477, 484, 492
AlwI	GGATC	1 cut(s)	286
AoxI	GGCC	1 cut(s)	715
ApeKI	GCWGC	4 cut(s)	305, 660, 723, 817
ApoI	RAATTY	3 cut(s)	60, 262, 438
AsuC2I	CCSGG	5 cut(s)	248, 592, 691, 971, 1004
AsuHPI	GGTGA	2 cut(s)	170, 374
BanI	GGYRCC	2 cut(s)	586, 1006
BanII	GRGCYC	2 cut(s)	477, 492
BauI	CACGAG	6 cut(s)	561, 607, 840, 886, 980, 1045
Bbv12I	GWGCWC	3 cut(s)	477, 484, 492
BbvI	GCAGC	4 cut(s)	292, 672, 710, 804
BccI	CCATC	1 cut(s)	317
BcgI	CGANNNNNNTGC	2 cut(s)	461, 495
BcnI	CCSGG	5 cut(s)	248, 592, 691, 971, 1004
BfaI	CTAG	1 cut(s)	1108
BfmI	CTRYAG	1 cut(s)	105
BglI	GCCNNNNNGGC	6 cut(s)	584, 691, 754, 971, 1004, 1036
BisI	GCNGC	7 cut(s)	232, 306, 661, 724, 755, 818, 864
BlsI	GCNGC	7 cut(s)	233, 307, 662, 725, 756, 819, 865
Bme1390I	CCNGG	5 cut(s)	248, 592, 691, 971, 1004
BmiI	GGNNCC	2 cut(s)	588, 1008
BmrFI	CCNGG	5 cut(s)	248, 592, 691, 971, 1004
BmsI	GCATC	2 cut(s)	19, 224
BplI	GAGNNNNNCTC	4 cut(s)	540, 572, 974, 1006
Bpu10I	CCTNAGC	4 cut(s)	486, 712, 781, 1013
BpuEI	CTTGAG	1 cut(s)	665
BpuMI	CCSGG	5 cut(s)	248, 592, 691, 971, 1004
BsaAI	YACGTR	1 cut(s)	143
BsaBI	GATNNNNATC	1 cut(s)	128
BsaJI	CCNNGG	3 cut(s)	247, 590, 861
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
Bse3DI	GCAATG	1 cut(s)	350
Bse8I	GATNNNNATC	1 cut(s)	128
BseDI	CCNNGG	3 cut(s)	247, 590, 861
BseJI	GATNNNNATC	1 cut(s)	128
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseMI	GCAATG	1 cut(s)	350
BseMII	CTCAG	3 cut(s)	477, 726, 1004
BseRI	GAGGAG	1 cut(s)	847
BseXI	GCAGC	4 cut(s)	292, 672, 710, 804
BseYI	CCCAGC	1 cut(s)	4
BsgI	GTGCAG	2 cut(s)	709, 803
Bsh1236I	CGCG	4 cut(s)	462, 538, 863, 940
BshFI	GGCC	1 cut(s)	717
BshNI	GGYRCC	2 cut(s)	586, 1006
BsiHKAI	GWGCWC	3 cut(s)	477, 484, 492
BsiSI	CCGG	5 cut(s)	247, 592, 691, 971, 1004
BslI	CCNNNNNNNGG	1 cut(s)	323
BsnI	GGCC	1 cut(s)	717
Bsp1286I	GDGCHC	3 cut(s)	477, 484, 492
Bsp143I	GATC	3 cut(s)	112, 165, 278
Bsp68I	TCGCGA	2 cut(s)	538, 940
BspANI	GGCC	1 cut(s)	717
BspCNI	CTCAG	3 cut(s)	478, 725, 1005
BspFNI	CGCG	4 cut(s)	462, 538, 863, 940
BspLI	GGNNCC	2 cut(s)	588, 1008
BspPI	GGATC	1 cut(s)	286
BspT107I	GGYRCC	2 cut(s)	586, 1006
BsrDI	GCAATG	1 cut(s)	350
BssECI	CCNNGG	3 cut(s)	247, 590, 861
BssMI	GATC	3 cut(s)	112, 165, 278
BssSI	CACGAG	6 cut(s)	561, 607, 840, 886, 980, 1045
Bst2BI	CACGAG	6 cut(s)	561, 607, 840, 886, 980, 1045
Bst4CI	ACNGT	2 cut(s)	139, 158
Bst6I	CTCTTC	1 cut(s)	156
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstBAI	YACGTR	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	868
BstDEI	CTNAG	4 cut(s)	486, 712, 781, 1013
BstDSI	CCRYGG	1 cut(s)	861
BstEII	GGTNACC	1 cut(s)	254
BstFNI	CGCG	4 cut(s)	462, 538, 863, 940
BstKTI	GATC	3 cut(s)	115, 168, 281
BstMBI	GATC	3 cut(s)	112, 165, 278
BstPI	GGTNACC	1 cut(s)	254
BstSCI	CCNGG	5 cut(s)	246, 590, 689, 969, 1002
BstSFI	CTRYAG	1 cut(s)	105
BstSNI	TACGTA	1 cut(s)	143
BstUI	CGCG	4 cut(s)	462, 538, 863, 940
BstV1I	GCAGC	4 cut(s)	292, 672, 710, 804
BsuRI	GGCC	1 cut(s)	717
BtgI	CCRYGG	1 cut(s)	861
BtsIMutI	CAGTG	1 cut(s)	135
BtuMI	TCGCGA	2 cut(s)	538, 940
Cac8I	GCNNGC	1 cut(s)	868
Cfr42I	CCGCGG	1 cut(s)	864
Csp6I	GTAC	2 cut(s)	140, 788
CviAII	CATG	1 cut(s)	34
CviQI	GTAC	2 cut(s)	140, 788
DdeI	CTNAG	4 cut(s)	486, 712, 781, 1013
DpnI	GATC	3 cut(s)	114, 167, 280
DpnII	GATC	3 cut(s)	112, 165, 278
DraI	TTTAAA	1 cut(s)	426
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Ecl136II	GAGCTC	2 cut(s)	475, 490
Eco105I	TACGTA	1 cut(s)	143
Eco147I	AGGCCT	1 cut(s)	717
Eco24I	GRGCYC	2 cut(s)	477, 492
Eco53kI	GAGCTC	2 cut(s)	475, 490
Eco57I	CTGAAG	1 cut(s)	598
Eco91I	GGTNACC	1 cut(s)	254
EcoICRI	GAGCTC	2 cut(s)	475, 490
EcoO65I	GGTNACC	1 cut(s)	254
EcoT22I	ATGCAT	1 cut(s)	39
EcoT38I	GRGCYC	2 cut(s)	477, 492
FaeI	CATG	1 cut(s)	37
FatI	CATG	1 cut(s)	33
FauI	CCCGC	8 cut(s)	517, 609, 716, 810, 888, 1062, 1076, 1108
FauNDI	CATATG	2 cut(s)	301, 310
Fnu4HI	GCNGC	7 cut(s)	232, 306, 661, 724, 755, 818, 864
FriOI	GRGCYC	2 cut(s)	477, 492
Fsp4HI	GCNGC	7 cut(s)	232, 306, 661, 724, 755, 818, 864
FspBI	CTAG	1 cut(s)	1108
GluI	GCNGC	7 cut(s)	232, 306, 661, 724, 755, 818, 864
GsaI	CCCAGC	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	717
HapII	CCGG	5 cut(s)	247, 592, 691, 971, 1004
Hin1II	CATG	1 cut(s)	37
HincII	GTYRAC	1 cut(s)	633
HindII	GTYRAC	1 cut(s)	633
HindIII	AAGCTT	2 cut(s)	503, 518
HinfI	GANTC	2 cut(s)	129, 148
HpaII	CCGG	5 cut(s)	247, 592, 691, 971, 1004
HphI	GGTGA	2 cut(s)	170, 374
Hpy166II	GTNNAC	1 cut(s)	633
Hpy188I	TCNGA	2 cut(s)	220, 670
Hpy188III	TCNNGA	9 cut(s)	485, 537, 561, 607, 793, 840, 886, 939, 1082
Hpy8I	GTNNAC	1 cut(s)	633
HpyCH4III	ACNGT	2 cut(s)	139, 158
HpyCH4IV	ACGT	1 cut(s)	142
HpyCH4V	TGCA	6 cut(s)	37, 53, 308, 347, 726, 820
HpyF3I	CTNAG	4 cut(s)	486, 712, 781, 1013
HpySE526I	ACGT	1 cut(s)	142
Hsp92II	CATG	1 cut(s)	37
KspI	CCGCGG	1 cut(s)	864
Kzo9I	GATC	3 cut(s)	112, 165, 278
LmnI	GCTCC	5 cut(s)	319, 480, 487, 495, 594
Lsp1109I	GCAGC	4 cut(s)	292, 672, 710, 804
LweI	GCATC	2 cut(s)	19, 224
MaeI	CTAG	1 cut(s)	1108
MaeII	ACGT	1 cut(s)	142
MaeIII	GTNAC	4 cut(s)	65, 97, 116, 254
MalI	GATC	3 cut(s)	114, 167, 280
MboI	GATC	3 cut(s)	112, 165, 278
MboII	GAAGA	2 cut(s)	173, 215
MfeI	CAATTG	1 cut(s)	328
MhlI	GDGCHC	3 cut(s)	477, 484, 492
MluCI	AATT	7 cut(s)	60, 82, 262, 328, 396, 438, 1063
Mph1103I	ATGCAT	1 cut(s)	39
MseI	TTAA	2 cut(s)	189, 425
MspA1I	CMGCKG	1 cut(s)	863
MspI	CCGG	5 cut(s)	247, 592, 691, 971, 1004
MspR9I	CCNGG	5 cut(s)	248, 592, 691, 971, 1004
MunI	CAATTG	1 cut(s)	328
MvnI	CGCG	4 cut(s)	462, 538, 863, 940
NciI	CCSGG	5 cut(s)	248, 592, 691, 971, 1004
NdeI	CATATG	2 cut(s)	301, 310
NdeII	GATC	3 cut(s)	112, 165, 278
NlaIII	CATG	1 cut(s)	37
NlaIV	GGNNCC	2 cut(s)	588, 1008
NmeAIII	GCCGAG	1 cut(s)	1015
NmuCI	GTSAC	1 cut(s)	65
NruI	TCGCGA	2 cut(s)	538, 940
NsiI	ATGCAT	1 cut(s)	39
PaeR7I	CTCGAG	1 cut(s)	762
PceI	AGGCCT	1 cut(s)	717
PcsI	WCGNNNNNNNCGW	1 cut(s)	1089
PfeI	GAWTC	2 cut(s)	129, 148
PflMI	CCANNNNNTGG	1 cut(s)	323
PkrI	GCNGC	7 cut(s)	233, 307, 662, 725, 756, 819, 865
Ppu21I	YACGTR	1 cut(s)	143
PsiI	TTATAA	1 cut(s)	435
Psp124BI	GAGCTC	2 cut(s)	477, 492
PspEI	GGTNACC	1 cut(s)	254
PspFI	CCCAGC	1 cut(s)	4
PspN4I	GGNNCC	2 cut(s)	588, 1008
PspXI	VCTCGAGB	1 cut(s)	762
RruI	TCGCGA	2 cut(s)	538, 940
RsaI	GTAC	2 cut(s)	141, 789
RsaNI	GTAC	2 cut(s)	140, 788
SacI	GAGCTC	2 cut(s)	477, 492
SacII	CCGCGG	1 cut(s)	864
SaqAI	TTAA	2 cut(s)	189, 425
SatI	GCNGC	7 cut(s)	232, 306, 661, 724, 755, 818, 864
Sau3AI	GATC	3 cut(s)	112, 165, 278
ScrFI	CCNGG	5 cut(s)	248, 592, 691, 971, 1004
SduI	GDGCHC	3 cut(s)	477, 484, 492
SfaNI	GCATC	2 cut(s)	19, 224
SfcI	CTRYAG	1 cut(s)	105
Sfr274I	CTCGAG	1 cut(s)	762
Sfr303I	CCGCGG	1 cut(s)	864
SgrBI	CCGCGG	1 cut(s)	864
SlaI	CTCGAG	1 cut(s)	762
SmlI	CTYRAG	2 cut(s)	680, 762
SmoI	CTYRAG	2 cut(s)	680, 762
SnaBI	TACGTA	1 cut(s)	143
Sse9I	AATT	7 cut(s)	60, 82, 262, 328, 396, 438, 1063
SseBI	AGGCCT	1 cut(s)	717
SspMI	CTAG	1 cut(s)	1108
SstI	GAGCTC	2 cut(s)	477, 492
StuI	AGGCCT	1 cut(s)	717
StyD4I	CCNGG	5 cut(s)	246, 590, 689, 969, 1002
TaaI	ACNGT	2 cut(s)	139, 158
TaiI	ACGT	1 cut(s)	145
TaqI	TCGA	2 cut(s)	582, 763
TaqII	GACCGA	1 cut(s)	618
TasI	AATT	7 cut(s)	60, 82, 262, 328, 396, 438, 1063
TauI	GCSGC	3 cut(s)	234, 757, 866
TfiI	GAWTC	2 cut(s)	129, 148
Tru1I	TTAA	2 cut(s)	189, 425
Tru9I	TTAA	2 cut(s)	189, 425
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	4 cut(s)	305, 660, 723, 817
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	3 cut(s)	225, 408, 431
TspGWI	ACGGA	1 cut(s)	467
TspRI	CASTG	1 cut(s)	142
Van91I	CCANNNNNTGG	1 cut(s)	323
XapI	RAATTY	3 cut(s)	60, 262, 438
XhoI	CTCGAG	1 cut(s)	762
XspI	CTAG	1 cut(s)	1108
Zsp2I	ATGCAT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.