Rmu_sc0007364.1_g000011

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007364.1
N/A
Physical Location & Seq
Reverse (-)
58852 .. 60178
1327 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 516 bp
atggtggtggcttttactatttctgtctctgtgaagaggcgaggaggtcagcgcaacggtaagtctttcgaatccatagcaccgccgaactggtcttcaattgccagctgctttttggtttctgacaatcttgatggatcaaggcagttaagaaatgggttctctagctttttggggtctaatgagggaagaggttgggagaccactgtgaagaagaatcaggttttgaaggccgagacggatggtatgagaatgcgtgtatccgagcttgagaaggagtgttccaacgtgagacaagagatcaagaagtggggaaatataacgaagaaacttggattcaagatcaaatcccagatcagtgttacctggatcgcgggtcgttgcggtacgggtacgtggtacgggatcgctgggtttgtcggctcgatcggtcggctcgatcgggtacgttgtgcagtgctcaagagggatctgttagcaaacagctcgacgaaaatggaaaaggtgagaaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

171

Amino Acids

18.98

Weight (kDa)

10.33

Isoelectric Point (pI)

28.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 374
AciI CCGC 3 cut(s) 83, 374, 384
AclWI GGATC 4 cut(s) 145, 377, 413, 477
AfaI GTAC 4 cut(s) 388, 394, 401, 447
AgsI TTSAA 3 cut(s) 99, 229, 340
AjnI CCWGG 1 cut(s) 365
AluBI AGCT 4 cut(s) 108, 168, 268, 486
AluI AGCT 4 cut(s) 108, 168, 268, 486
Alw21I GWGCWC 1 cut(s) 462
Alw26I GTCTC 4 cut(s) 31, 194, 230, 286
AlwI GGATC 4 cut(s) 145, 377, 413, 477
AoxI GGCC 1 cut(s) 231
ApeKI GCWGC 1 cut(s) 108
AspLEI GCGC 1 cut(s) 54
AsuII TTCGAA 1 cut(s) 69
BbsI GAAGAC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 462
BbvI GCAGC 1 cut(s) 95
BccI CCATC 2 cut(s) 128, 236
BcgI CGANNNNNNTGC 2 cut(s) 468, 502
BciT130I CCWGG 1 cut(s) 367
BciVI GTATCC 1 cut(s) 271
BcoDI GTCTC 4 cut(s) 31, 194, 230, 286
BfaI CTAG 1 cut(s) 165
BfuI GTATCC 1 cut(s) 271
BisI GCNGC 1 cut(s) 109
BlsI GCNGC 1 cut(s) 110
Bme1390I CCNGG 1 cut(s) 367
BmrFI CCNGG 1 cut(s) 367
BpiI GAAGAC 1 cut(s) 87
Bpu14I TTCGAA 1 cut(s) 69
BpuEI CTTGAG 2 cut(s) 290, 446
BsaAI YACGTR 1 cut(s) 396
BsaI GGTCTC 1 cut(s) 194
Bse1I ACTGG 1 cut(s) 95
BseBI CCWGG 1 cut(s) 367
BseGI GGATG 1 cut(s) 247
BseNI ACTGG 1 cut(s) 95
BseRI GAGGAG 1 cut(s) 57
BseXI GCAGC 1 cut(s) 95
BseYI CCCAGC 1 cut(s) 410
BsgI GTGCAG 1 cut(s) 474
Bsh1236I CGCG 1 cut(s) 374
Bsh1285I CGRYCG 3 cut(s) 429, 433, 442
BshFI GGCC 1 cut(s) 233
BsiEI CGRYCG 3 cut(s) 429, 433, 442
BsiHKAI GWGCWC 1 cut(s) 462
BsmAI GTCTC 4 cut(s) 31, 194, 230, 286
BsmBI CGTCTC 1 cut(s) 230
BsmI GAATGC 1 cut(s) 258
BsnI GGCC 1 cut(s) 233
Bso31I GGTCTC 1 cut(s) 194
Bsp119I TTCGAA 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 462
Bsp143I GATC 9 cut(s) 137, 300, 342, 354, 369, 405, 426, 439, 469
BspACI CCGC 3 cut(s) 83, 374, 384
BspANI GGCC 1 cut(s) 233
BspFNI CGCG 1 cut(s) 374
BspPI GGATC 4 cut(s) 145, 377, 413, 477
BspT104I TTCGAA 1 cut(s) 69
BspTNI GGTCTC 1 cut(s) 194
BsrI ACTGG 1 cut(s) 95
BssMI GATC 9 cut(s) 137, 300, 342, 354, 369, 405, 426, 439, 469
Bst2UI CCWGG 1 cut(s) 367
Bst4CI ACNGT 2 cut(s) 59, 208
Bst6I CTCTTC 2 cut(s) 29, 184
BstBAI YACGTR 1 cut(s) 396
BstBI TTCGAA 1 cut(s) 69
BstC8I GCNNGC 1 cut(s) 106
BstF5I GGATG 1 cut(s) 247
BstFNI CGCG 1 cut(s) 374
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 9 cut(s) 140, 303, 345, 357, 372, 408, 429, 442, 472
BstMAI GTCTC 4 cut(s) 31, 194, 230, 286
BstMBI GATC 9 cut(s) 137, 300, 342, 354, 369, 405, 426, 439, 469
BstMCI CGRYCG 3 cut(s) 429, 433, 442
BstNI CCWGG 1 cut(s) 367
BstSCI CCNGG 1 cut(s) 365
BstUI CGCG 1 cut(s) 374
BstV1I GCAGC 1 cut(s) 95
BstV2I GAAGAC 1 cut(s) 87
BstX2I RGATCY 1 cut(s) 469
BstYI RGATCY 1 cut(s) 469
BsuI GTATCC 1 cut(s) 271
BsuRI GGCC 1 cut(s) 233
BtsCI GGATG 1 cut(s) 247
BtsI GCAGTG 1 cut(s) 462
BtsIMutI CAGTG 3 cut(s) 204, 364, 462
Cac8I GCNNGC 1 cut(s) 106
CfoI GCGC 1 cut(s) 54
Csp6I GTAC 4 cut(s) 387, 393, 400, 446
CviJI RGCY 8 cut(s) 11, 108, 168, 233, 268, 423, 436, 486
CviKI_1 RGCY 8 cut(s) 11, 108, 168, 233, 268, 423, 436, 486
CviQI GTAC 4 cut(s) 387, 393, 400, 446
DpnI GATC 9 cut(s) 139, 302, 344, 356, 371, 407, 428, 441, 471
DpnII GATC 9 cut(s) 137, 300, 342, 354, 369, 405, 426, 439, 469
Eam1104I CTCTTC 2 cut(s) 29, 184
EarI CTCTTC 2 cut(s) 29, 184
Eco31I GGTCTC 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 365
Esp3I CGTCTC 1 cut(s) 230
FaiI YATR 3 cut(s) 77, 248, 320
FauI CCCGC 1 cut(s) 367
Fnu4HI GCNGC 1 cut(s) 109
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 1 cut(s) 109
FspBI CTAG 1 cut(s) 165
GlaI GCGC 1 cut(s) 53
GluI GCNGC 1 cut(s) 109
GsaI CCCAGC 1 cut(s) 414
HaeIII GGCC 1 cut(s) 233
HhaI GCGC 1 cut(s) 54
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HinfI GANTC 3 cut(s) 71, 217, 336
Hpy188I TCNGA 2 cut(s) 124, 265
Hpy188III TCNNGA 4 cut(s) 131, 304, 340, 463
Hpy99I CGWCG 1 cut(s) 493
HpyAV CCTTC 2 cut(s) 223, 268
HpyCH4III ACNGT 2 cut(s) 59, 208
HpyCH4IV ACGT 3 cut(s) 288, 395, 448
HpyCH4V TGCA 1 cut(s) 455
HpySE526I ACGT 3 cut(s) 288, 395, 448
HspAI GCGC 1 cut(s) 52
Kzo9I GATC 9 cut(s) 137, 300, 342, 354, 369, 405, 426, 439, 469
LpnPI CCDG 7 cut(s) 76, 118, 206, 352, 365, 379, 396
Lsp1109I GCAGC 1 cut(s) 95
MaeI CTAG 1 cut(s) 165
MaeII ACGT 3 cut(s) 288, 395, 448
MaeIII GTNAC 1 cut(s) 361
MalI GATC 9 cut(s) 139, 302, 344, 356, 371, 407, 428, 441, 471
MboI GATC 9 cut(s) 137, 300, 342, 354, 369, 405, 426, 439, 469
MboII GAAGA 6 cut(s) 46, 87, 201, 223, 226, 337
MfeI CAATTG 1 cut(s) 99
MflI RGATCY 1 cut(s) 469
MhlI GDGCHC 1 cut(s) 462
MluCI AATT 2 cut(s) 99, 511
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 6 cut(s) 30, 35, 38, 178, 185, 459
MseI TTAA 2 cut(s) 149, 514
MspA1I CMGCKG 1 cut(s) 108
MspR9I CCNGG 1 cut(s) 367
MunI CAATTG 1 cut(s) 99
Mva1269I GAATGC 1 cut(s) 258
MvaI CCWGG 1 cut(s) 367
MvnI CGCG 1 cut(s) 374
NdeII GATC 9 cut(s) 137, 300, 342, 354, 369, 405, 426, 439, 469
NmeAIII GCCGAG 1 cut(s) 259
NspV TTCGAA 1 cut(s) 69
PcsI WCGNNNNNNNCGW 1 cut(s) 435
PctI GAATGC 1 cut(s) 258
PfeI GAWTC 3 cut(s) 71, 217, 336
PkrI GCNGC 1 cut(s) 110
Ple19I CGATCG 2 cut(s) 429, 442
Ppu21I YACGTR 1 cut(s) 396
Psp6I CCWGG 1 cut(s) 365
PspFI CCCAGC 1 cut(s) 410
PspGI CCWGG 1 cut(s) 365
PsuI RGATCY 1 cut(s) 469
PvuI CGATCG 2 cut(s) 429, 442
PvuII CAGCTG 1 cut(s) 108
RsaI GTAC 4 cut(s) 388, 394, 401, 447
RsaNI GTAC 4 cut(s) 387, 393, 400, 446
SaqAI TTAA 2 cut(s) 149, 514
SatI GCNGC 1 cut(s) 109
Sau3AI GATC 9 cut(s) 137, 300, 342, 354, 369, 405, 426, 439, 469
ScrFI CCNGG 1 cut(s) 367
SduI GDGCHC 1 cut(s) 462
SfuI TTCGAA 1 cut(s) 69
SmlI CTYRAG 2 cut(s) 269, 461
SmoI CTYRAG 2 cut(s) 269, 461
Sse9I AATT 2 cut(s) 99, 511
SsiI CCGC 3 cut(s) 83, 374, 384
SspMI CTAG 1 cut(s) 165
StyD4I CCNGG 1 cut(s) 365
TaaI ACNGT 2 cut(s) 59, 208
TaiI ACGT 3 cut(s) 291, 398, 451
TaqI TCGA 4 cut(s) 69, 425, 438, 488
TaqII GACCGA 1 cut(s) 419
TasI AATT 2 cut(s) 99, 511
TfiI GAWTC 3 cut(s) 71, 217, 336
Tru1I TTAA 2 cut(s) 149, 514
Tru9I TTAA 2 cut(s) 149, 514
TscAI CASTG 3 cut(s) 211, 364, 462
TseI GCWGC 1 cut(s) 108
TspGWI ACGGA 1 cut(s) 254
TspRI CASTG 3 cut(s) 211, 364, 462
XcmI CCANNNNNNNNNTGG 1 cut(s) 112
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.