Rmu_sc0007369.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007369.1
N/A
Physical Location & Seq
Reverse (-)
16217 .. 16916
700 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 501 bp
atgttaccttttcggttgcaggagctgtttccccactcacaccacaggcattgtgtgatgcaattgcacaataatttcaaatcagatggccatactggtctggagttaaagcaaaggctgcggactattgcacgagcaagtaccatgacacaatacacaaaggctatgaatgatttggcaaaagtttcattcacagcttggcaatggtgtaatgataggcctgctgttcactggtccaggtctcactttgatgagatcctgaaatgtgatgttctgttgaacaatcacatcctgaaatgtgatgttctgttgaacaatcacagaaaaggaatcccagttgaagtaggaatcctaagtcaactaggagtgagctcggaaaaatggtgtctggaaatgagaaatggaagagtcccagttggactaggaaacctgattacactaggagtcttgatgctgctaggagacctagtgagactaggagatgttgtggcttcaagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

166

Amino Acids

18.93

Weight (kDa)

9.33

Isoelectric Point (pI)

35.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 121
AclWI GGATC 1 cut(s) 250
AcoI YGGCCR 1 cut(s) 88
AfaI GTAC 1 cut(s) 142
AgsI TTSAA 5 cut(s) 79, 280, 313, 341, 495
AjnI CCWGG 1 cut(s) 236
AluBI AGCT 3 cut(s) 25, 197, 372
AluI AGCT 3 cut(s) 25, 197, 372
Alw21I GWGCWC 1 cut(s) 374
Alw26I GTCTC 3 cut(s) 246, 456, 466
AlwI GGATC 1 cut(s) 250
AlwNI CAGNNNCTG 1 cut(s) 25
AoxI GGCC 2 cut(s) 88, 218
ApeKI GCWGC 2 cut(s) 118, 454
AspS9I GGNCC 1 cut(s) 234
AvaII GGWCC 1 cut(s) 234
BalI TGGCCA 1 cut(s) 90
BanII GRGCYC 1 cut(s) 374
BauI CACGAG 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 374
BbvI GCAGC 2 cut(s) 105, 441
BccI CCATC 1 cut(s) 80
BciT130I CCWGG 1 cut(s) 238
BcoDI GTCTC 3 cut(s) 246, 456, 466
BfaI CTAG 6 cut(s) 362, 422, 440, 458, 467, 476
BisI GCNGC 2 cut(s) 119, 455
BlsI GCNGC 2 cut(s) 120, 456
Bme1390I CCNGG 1 cut(s) 238
Bme18I GGWCC 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 234
BmrFI CCNGG 1 cut(s) 238
BmrI ACTGGG 2 cut(s) 329, 407
BmsI GCATC 2 cut(s) 48, 441
BmuI ACTGGG 2 cut(s) 329, 407
BpmI CTGGAG 1 cut(s) 122
BsaI GGTCTC 2 cut(s) 246, 456
BsaXI ACNNNNNCTCC 4 cut(s) 453, 471, 483, 501
Bse1I ACTGG 4 cut(s) 100, 236, 335, 413
Bse3DI GCAATG 1 cut(s) 209
BseBI CCWGG 1 cut(s) 238
BseGI GGATG 1 cut(s) 288
BseMI GCAATG 1 cut(s) 209
BseNI ACTGG 4 cut(s) 100, 236, 335, 413
BseXI GCAGC 2 cut(s) 105, 441
BshFI GGCC 2 cut(s) 90, 220
BsiHKAI GWGCWC 1 cut(s) 374
BslFI GGGAC 1 cut(s) 395
BsmAI GTCTC 3 cut(s) 246, 456, 466
BsmFI GGGAC 1 cut(s) 395
BsnI GGCC 2 cut(s) 90, 220
Bso31I GGTCTC 2 cut(s) 246, 456
Bsp1286I GDGCHC 1 cut(s) 374
Bsp143I GATC 1 cut(s) 255
BspACI CCGC 1 cut(s) 121
BspANI GGCC 2 cut(s) 90, 220
BspPI GGATC 1 cut(s) 250
BspTNI GGTCTC 2 cut(s) 246, 456
BsrDI GCAATG 1 cut(s) 209
BsrI ACTGG 4 cut(s) 100, 236, 335, 413
BssMI GATC 1 cut(s) 255
BssSI CACGAG 1 cut(s) 132
Bst2BI CACGAG 1 cut(s) 132
Bst2UI CCWGG 1 cut(s) 238
Bst6I CTCTTC 1 cut(s) 400
BstAPI GCANNNNNTGC 1 cut(s) 118
BstC8I GCNNGC 1 cut(s) 222
BstDEI CTNAG 1 cut(s) 353
BstF5I GGATG 1 cut(s) 288
BstKTI GATC 1 cut(s) 258
BstMAI GTCTC 3 cut(s) 246, 456, 466
BstMBI GATC 1 cut(s) 255
BstMWI GCNNNNNNNGC 1 cut(s) 118
BstNI CCWGG 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 236
BstV1I GCAGC 2 cut(s) 105, 441
BstX2I RGATCY 1 cut(s) 255
BstYI RGATCY 1 cut(s) 255
BsuRI GGCC 2 cut(s) 90, 220
BtsCI GGATG 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 229
Cac8I GCNNGC 1 cut(s) 222
CaiI CAGNNNCTG 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 234
Csp6I GTAC 1 cut(s) 141
CspCI CAANNNNNGTGG 2 cut(s) 32, 67
CviAII CATG 1 cut(s) 145
CviJI RGCY 8 cut(s) 25, 90, 118, 164, 197, 220, 372, 491
CviKI_1 RGCY 8 cut(s) 25, 90, 118, 164, 197, 220, 372, 491
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 1 cut(s) 353
DpnI GATC 1 cut(s) 257
DpnII GATC 1 cut(s) 255
EaeI YGGCCR 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 400
EarI CTCTTC 1 cut(s) 400
Ecl136II GAGCTC 1 cut(s) 372
Eco147I AGGCCT 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 374
Eco31I GGTCTC 2 cut(s) 246, 456
Eco47I GGWCC 1 cut(s) 234
Eco53kI GAGCTC 1 cut(s) 372
EcoICRI GAGCTC 1 cut(s) 372
EcoRII CCWGG 1 cut(s) 236
EcoT38I GRGCYC 1 cut(s) 374
FaeI CATG 1 cut(s) 148
FaiI YATR 3 cut(s) 93, 146, 167
FaqI GGGAC 1 cut(s) 395
FatI CATG 1 cut(s) 144
Fnu4HI GCNGC 2 cut(s) 119, 455
FokI GGATG 1 cut(s) 275
FriOI GRGCYC 1 cut(s) 374
Fsp4HI GCNGC 2 cut(s) 119, 455
FspBI CTAG 6 cut(s) 362, 422, 440, 458, 467, 476
GluI GCNGC 2 cut(s) 119, 455
GsuI CTGGAG 1 cut(s) 122
HaeIII GGCC 2 cut(s) 90, 220
Hin1II CATG 1 cut(s) 148
HincII GTYRAC 1 cut(s) 359
HindII GTYRAC 1 cut(s) 359
HinfI GANTC 4 cut(s) 330, 348, 408, 444
Hpy166II GTNNAC 2 cut(s) 229, 359
Hpy188I TCNGA 2 cut(s) 85, 376
Hpy188III TCNNGA 6 cut(s) 101, 259, 292, 389, 448, 495
Hpy8I GTNNAC 2 cut(s) 229, 359
HpyCH4V TGCA 4 cut(s) 19, 61, 67, 131
HpyF10VI GCNNNNNNNGC 1 cut(s) 118
HpyF3I CTNAG 1 cut(s) 353
Hsp92II CATG 1 cut(s) 148
Kzo9I GATC 1 cut(s) 255
LmnI GCTCC 1 cut(s) 22
Lsp1109I GCAGC 2 cut(s) 105, 441
LweI GCATC 2 cut(s) 48, 441
MaeI CTAG 6 cut(s) 362, 422, 440, 458, 467, 476
MaeIII GTNAC 1 cut(s) 3
MalI GATC 1 cut(s) 257
MboI GATC 1 cut(s) 255
MboII GAAGA 1 cut(s) 417
MfeI CAATTG 1 cut(s) 62
MflI RGATCY 1 cut(s) 255
MhlI GDGCHC 1 cut(s) 374
MlsI TGGCCA 1 cut(s) 90
MluCI AATT 2 cut(s) 62, 73
MluNI TGGCCA 1 cut(s) 90
MlyI GAGTC 2 cut(s) 417, 453
MmeI TCCRAC 1 cut(s) 397
Mox20I TGGCCA 1 cut(s) 90
MscI TGGCCA 1 cut(s) 90
MseI TTAA 1 cut(s) 107
MslI CAYNNNNRTG 1 cut(s) 249
Msp20I TGGCCA 1 cut(s) 90
MspR9I CCNGG 1 cut(s) 238
MunI CAATTG 1 cut(s) 62
MvaI CCWGG 1 cut(s) 238
MwoI GCNNNNNNNGC 1 cut(s) 118
NdeII GATC 1 cut(s) 255
NlaIII CATG 1 cut(s) 148
PceI AGGCCT 1 cut(s) 220
PfeI GAWTC 2 cut(s) 330, 348
PkrI GCNGC 2 cut(s) 120, 456
PleI GAGTC 2 cut(s) 416, 452
PpsI GAGTC 2 cut(s) 416, 452
Psp124BI GAGCTC 1 cut(s) 374
Psp6I CCWGG 1 cut(s) 236
PspGI CCWGG 1 cut(s) 236
PspPI GGNCC 1 cut(s) 234
PstNI CAGNNNCTG 1 cut(s) 25
PsuI RGATCY 1 cut(s) 255
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
RseI CAYNNNNRTG 1 cut(s) 249
SacI GAGCTC 1 cut(s) 374
SaqAI TTAA 1 cut(s) 107
SatI GCNGC 2 cut(s) 119, 455
Sau3AI GATC 1 cut(s) 255
Sau96I GGNCC 1 cut(s) 234
SchI GAGTC 2 cut(s) 417, 453
ScrFI CCNGG 1 cut(s) 238
SduI GDGCHC 1 cut(s) 374
SetI ASST 7 cut(s) 10, 27, 199, 242, 374, 432, 468
SfaNI GCATC 2 cut(s) 48, 441
SinI GGWCC 1 cut(s) 234
SmiMI CAYNNNNRTG 1 cut(s) 249
Sse9I AATT 2 cut(s) 62, 73
SseBI AGGCCT 1 cut(s) 220
SsiI CCGC 1 cut(s) 121
SspMI CTAG 6 cut(s) 362, 422, 440, 458, 467, 476
SstI GAGCTC 1 cut(s) 374
StuI AGGCCT 1 cut(s) 220
StyD4I CCNGG 1 cut(s) 236
TasI AATT 2 cut(s) 62, 73
TfiI GAWTC 2 cut(s) 330, 348
Tru1I TTAA 1 cut(s) 107
Tru9I TTAA 1 cut(s) 107
TscAI CASTG 1 cut(s) 236
TseI GCWGC 2 cut(s) 118, 454
TspDTI ATGAA 2 cut(s) 177, 182
TspRI CASTG 1 cut(s) 236
VpaK11BI GGWCC 1 cut(s) 234
XspI CTAG 6 cut(s) 362, 422, 440, 458, 467, 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.