Rmu_sc0007380.1_g000015

Aminotransferase class-V

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007380.1
N/A
Physical Location & Seq
Forward (+)
54000 .. 56185
2186 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 753 bp
atgctaattggggttactgggacatatctatccgtaggaaatactcacacttgcgagagttatgttggtcttcggactacaaaattggtgtatcaagcaggcaaatacatcaagaaatgcttagggggtggagaagaggatgcactcatgttttgtggccagggcaccacttcagcaattaaaaggttccaagaggtgatgggtgttaccgtaccatcaattttaagagagagggtcataaacactcttggtacccaagaaagatgggtggtgtttgttggtccctatgagcaccactcgaaccttgtttcgtggcggcaaagcctggctgaagtagttgagattggtctaaatgatgaaggcttactggatatggaagctcttacactgcaactcgagtcattcaaacatgctaaccgcccgattttgggttccttctcggcttgtagtaatgtcaccggagtttatccggacacacgagcaattgcacgacttcttcatcaatatggaggatttgtgtgctttgaagatcttctatcttctccaccgtccacttgtgaaggtggaactgttgattatgtcaatggcttcagtgaaaaggctagaggcggctgcgactgcgcagggcagtacggccacgctcttctcggaatcgacgagactagctcacatgcctatagatgtgccatccagaatggttatgtgggattgaaacccggatggactcgaatcagttttccctactacatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

250

Amino Acids

27.31

Weight (kDa)

5.97

Isoelectric Point (pI)

26.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_5 PF00266 11 - 174 1.9e-09 Aminotransferase class-V
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 622
Acc65I GGTACC 1 cut(s) 251
AccB1I GGYRCC 2 cut(s) 164, 251
AccIII TCCGGA 1 cut(s) 469
AciI CCGC 3 cut(s) 316, 418, 609
AcoI YGGCCR 2 cut(s) 157, 634
AcuI CTGAAG 3 cut(s) 156, 351, 574
AfaI GTAC 3 cut(s) 213, 253, 632
AfiI CCNNNNNNNGG 2 cut(s) 427, 428
AgsI TTSAA 3 cut(s) 406, 527, 712
AjnI CCWGG 2 cut(s) 159, 324
AluBI AGCT 2 cut(s) 380, 666
AluI AGCT 2 cut(s) 380, 666
Alw21I GWGCWC 1 cut(s) 294
Alw26I GTCTC 1 cut(s) 653
Ama87I CYCGRG 1 cut(s) 395
Aor13HI TCCGGA 1 cut(s) 469
AoxI GGCC 2 cut(s) 157, 634
ApeKI GCWGC 1 cut(s) 612
Asp700I GAANNNNTTC 1 cut(s) 531
Asp718I GGTACC 1 cut(s) 251
AspLEI GCGC 1 cut(s) 623
AspS9I GGNCC 1 cut(s) 281
AsuC2I CCSGG 1 cut(s) 717
AsuHPI GGTGA 2 cut(s) 208, 448
AvaI CYCGRG 1 cut(s) 395
AvaII GGWCC 1 cut(s) 281
BaeGI GKGCMC 1 cut(s) 167
BalI TGGCCA 1 cut(s) 159
BanI GGYRCC 2 cut(s) 164, 251
BauI CACGAG 1 cut(s) 477
BbsI GAAGAC 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 294
BbvI GCAGC 1 cut(s) 599
BccI CCATC 5 cut(s) 193, 223, 258, 695, 714
BceAI ACGGC 1 cut(s) 649
BciT130I CCWGG 2 cut(s) 161, 326
BcnI CCSGG 1 cut(s) 717
BcoDI GTCTC 1 cut(s) 653
BfaI CTAG 2 cut(s) 603, 663
BfmI CTRYAG 1 cut(s) 676
BglII AGATCT 1 cut(s) 529
BisI GCNGC 3 cut(s) 317, 610, 613
BlsI GCNGC 3 cut(s) 318, 611, 614
Bme1390I CCNGG 3 cut(s) 161, 326, 717
Bme18I GGWCC 1 cut(s) 281
BmeT110I CYCGRG 1 cut(s) 395
BmgT120I GGNCC 1 cut(s) 281
BmiI GGNNCC 5 cut(s) 166, 188, 253, 283, 433
BmrFI CCNGG 3 cut(s) 161, 326, 717
BmrI ACTGGG 1 cut(s) 27
BmsI GCATC 1 cut(s) 130
BmuI ACTGGG 1 cut(s) 27
BpiI GAAGAC 1 cut(s) 62
BplI GAGNNNNNCTC 4 cut(s) 281, 313, 650, 682
Bpu10I CCTNAGC 1 cut(s) 121
BpuMI CCSGG 1 cut(s) 717
BsaJI CCNNGG 1 cut(s) 160
BsaWI WCCGGW 2 cut(s) 458, 469
BsaXI ACNNNNNCTCC 2 cut(s) 501, 531
Bsc4I CCNNNNNNNGG 2 cut(s) 427, 428
Bse1I ACTGG 2 cut(s) 22, 372
BseAI TCCGGA 1 cut(s) 469
BseBI CCWGG 2 cut(s) 161, 326
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 3 cut(s) 145, 687, 725
BseLI CCNNNNNNNGG 2 cut(s) 427, 428
BseNI ACTGG 2 cut(s) 22, 372
BseSI GKGCMC 1 cut(s) 167
BseXI GCAGC 1 cut(s) 599
BshFI GGCC 2 cut(s) 159, 636
BshNI GGYRCC 2 cut(s) 164, 251
BsiHKAI GWGCWC 1 cut(s) 294
BsiHKCI CYCGRG 1 cut(s) 395
BsiSI CCGG 3 cut(s) 459, 470, 717
BslFI GGGAC 2 cut(s) 34, 267
BslI CCNNNNNNNGG 2 cut(s) 427, 428
BsmAI GTCTC 1 cut(s) 653
BsmFI GGGAC 2 cut(s) 34, 267
BsnI GGCC 2 cut(s) 159, 636
BsoBI CYCGRG 1 cut(s) 395
Bsp1286I GDGCHC 2 cut(s) 167, 294
Bsp13I TCCGGA 1 cut(s) 469
Bsp143I GATC 1 cut(s) 529
BspACI CCGC 3 cut(s) 316, 418, 609
BspANI GGCC 2 cut(s) 159, 636
BspEI TCCGGA 1 cut(s) 469
BspLI GGNNCC 5 cut(s) 166, 188, 253, 283, 433
BspQI GCTCTTC 1 cut(s) 648
BspT107I GGYRCC 2 cut(s) 164, 251
BsrI ACTGG 2 cut(s) 22, 372
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 1 cut(s) 529
BssSI CACGAG 1 cut(s) 477
Bst2BI CACGAG 1 cut(s) 477
Bst2UI CCWGG 2 cut(s) 161, 326
Bst4CI ACNGT 3 cut(s) 211, 549, 571
Bst6I CTCTTC 2 cut(s) 129, 648
BstC8I GCNNGC 1 cut(s) 100
BstDEI CTNAG 1 cut(s) 121
BstF5I GGATG 3 cut(s) 145, 687, 725
BstHHI GCGC 1 cut(s) 623
BstKTI GATC 1 cut(s) 532
BstMAI GTCTC 1 cut(s) 653
BstMBI GATC 1 cut(s) 529
BstMWI GCNNNNNNNGC 1 cut(s) 618
BstNI CCWGG 2 cut(s) 161, 326
BstNSI RCATGY 2 cut(s) 413, 674
BstSCI CCNGG 3 cut(s) 159, 324, 715
BstSFI CTRYAG 1 cut(s) 676
BstSLI GKGCMC 1 cut(s) 167
BstV1I GCAGC 1 cut(s) 599
BstV2I GAAGAC 1 cut(s) 62
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
BsuRI GGCC 2 cut(s) 159, 636
BtsCI GGATG 3 cut(s) 145, 687, 725
BtsI GCAGTG 1 cut(s) 386
BtsIMutI CAGTG 2 cut(s) 386, 598
Cac8I GCNNGC 1 cut(s) 100
CfoI GCGC 1 cut(s) 623
Cfr13I GGNCC 1 cut(s) 281
Csp6I GTAC 3 cut(s) 212, 252, 631
CviAII CATG 3 cut(s) 148, 410, 671
CviQI GTAC 3 cut(s) 212, 252, 631
DdeI CTNAG 1 cut(s) 121
DpnI GATC 1 cut(s) 531
DpnII GATC 1 cut(s) 529
EaeI YGGCCR 2 cut(s) 157, 634
Eam1104I CTCTTC 2 cut(s) 129, 648
EarI CTCTTC 2 cut(s) 129, 648
Eco47I GGWCC 1 cut(s) 281
Eco57I CTGAAG 3 cut(s) 156, 351, 574
Eco88I CYCGRG 1 cut(s) 395
EcoRII CCWGG 2 cut(s) 159, 324
FaeI CATG 3 cut(s) 151, 413, 674
FalI AAGNNNNNCTT 2 cut(s) 104, 136
FaqI GGGAC 2 cut(s) 34, 267
FatI CATG 3 cut(s) 147, 409, 670
Fnu4HI GCNGC 3 cut(s) 317, 610, 613
FokI GGATG 3 cut(s) 152, 674, 732
Fsp4HI GCNGC 3 cut(s) 317, 610, 613
FspBI CTAG 2 cut(s) 603, 663
FspI TGCGCA 1 cut(s) 622
GlaI GCGC 1 cut(s) 622
GluI GCNGC 3 cut(s) 317, 610, 613
HaeIII GGCC 2 cut(s) 159, 636
HapII CCGG 3 cut(s) 459, 470, 717
HhaI GCGC 1 cut(s) 623
Hin1II CATG 3 cut(s) 151, 413, 674
Hin6I GCGC 1 cut(s) 621
HinP1I GCGC 1 cut(s) 621
HinfI GANTC 4 cut(s) 398, 651, 724, 729
HpaII CCGG 3 cut(s) 459, 470, 717
HphI GGTGA 2 cut(s) 208, 448
Hpy166II GTNNAC 1 cut(s) 552
Hpy188I TCNGA 2 cut(s) 75, 650
Hpy188III TCNNGA 3 cut(s) 112, 470, 691
Hpy8I GTNNAC 1 cut(s) 552
Hpy99I CGWCG 1 cut(s) 659
HpyAV CCTTC 3 cut(s) 353, 445, 554
HpyCH4III ACNGT 3 cut(s) 211, 549, 571
HpyCH4V TGCA 3 cut(s) 143, 391, 488
HpyF10VI GCNNNNNNNGC 1 cut(s) 618
HpyF3I CTNAG 1 cut(s) 121
Hsp92II CATG 3 cut(s) 151, 413, 674
HspAI GCGC 1 cut(s) 621
Kpn2I TCCGGA 1 cut(s) 469
KpnI GGTACC 1 cut(s) 255
Kzo9I GATC 1 cut(s) 529
LguI GCTCTTC 1 cut(s) 648
Lsp1109I GCAGC 1 cut(s) 599
LweI GCATC 1 cut(s) 130
MaeI CTAG 2 cut(s) 603, 663
MaeIII GTNAC 3 cut(s) 13, 205, 454
MalI GATC 1 cut(s) 531
MboI GATC 1 cut(s) 529
MboII GAAGA 7 cut(s) 62, 146, 488, 524, 531, 539, 635
MfeI CAATTG 1 cut(s) 483
MflI RGATCY 1 cut(s) 529
MhlI GDGCHC 2 cut(s) 167, 294
MlsI TGGCCA 1 cut(s) 159
MluCI AATT 5 cut(s) 6, 83, 177, 219, 483
MluNI TGGCCA 1 cut(s) 159
MlyI GAGTC 2 cut(s) 407, 718
MnlI CCTC 5 cut(s) 130, 187, 225, 503, 599
Mox20I TGGCCA 1 cut(s) 159
MroI TCCGGA 1 cut(s) 469
MroXI GAANNNNTTC 1 cut(s) 531
MscI TGGCCA 1 cut(s) 159
MseI TTAA 2 cut(s) 180, 224
MslI CAYNNNNRTG 1 cut(s) 504
Msp20I TGGCCA 1 cut(s) 159
MspI CCGG 3 cut(s) 459, 470, 717
MspR9I CCNGG 3 cut(s) 161, 326, 717
MunI CAATTG 1 cut(s) 483
MvaI CCWGG 2 cut(s) 161, 326
MwoI GCNNNNNNNGC 1 cut(s) 618
NciI CCSGG 1 cut(s) 717
NdeII GATC 1 cut(s) 529
NlaIII CATG 3 cut(s) 151, 413, 674
NlaIV GGNNCC 5 cut(s) 166, 188, 253, 283, 433
NmeAIII GCCGAG 1 cut(s) 419
NmuCI GTSAC 1 cut(s) 454
NsbI TGCGCA 1 cut(s) 622
NspI RCATGY 2 cut(s) 413, 674
PaeR7I CTCGAG 1 cut(s) 395
PciSI GCTCTTC 1 cut(s) 648
PcsI WCGNNNNNNNCGW 1 cut(s) 654
PdmI GAANNNNTTC 1 cut(s) 531
PfeI GAWTC 2 cut(s) 651, 729
PkrI GCNGC 3 cut(s) 318, 611, 614
PleI GAGTC 2 cut(s) 406, 718
PpsI GAGTC 2 cut(s) 406, 718
Psp6I CCWGG 2 cut(s) 159, 324
PspGI CCWGG 2 cut(s) 159, 324
PspN4I GGNNCC 5 cut(s) 166, 188, 253, 283, 433
PspPI GGNCC 1 cut(s) 281
PspXI VCTCGAGB 1 cut(s) 395
PsuI RGATCY 1 cut(s) 529
RsaI GTAC 3 cut(s) 213, 253, 632
RsaNI GTAC 3 cut(s) 212, 252, 631
RseI CAYNNNNRTG 1 cut(s) 504
SapI GCTCTTC 1 cut(s) 648
SaqAI TTAA 2 cut(s) 180, 224
SatI GCNGC 3 cut(s) 317, 610, 613
Sau3AI GATC 1 cut(s) 529
Sau96I GGNCC 1 cut(s) 281
SchI GAGTC 2 cut(s) 407, 718
ScrFI CCNGG 3 cut(s) 161, 326, 717
SduI GDGCHC 2 cut(s) 167, 294
SetI ASST 6 cut(s) 188, 198, 306, 382, 565, 668
SfaNI GCATC 1 cut(s) 130
SfcI CTRYAG 1 cut(s) 676
Sfr274I CTCGAG 1 cut(s) 395
SinI GGWCC 1 cut(s) 281
SlaI CTCGAG 1 cut(s) 395
SmiMI CAYNNNNRTG 1 cut(s) 504
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
Sse9I AATT 5 cut(s) 6, 83, 177, 219, 483
SsiI CCGC 3 cut(s) 316, 418, 609
SspMI CTAG 2 cut(s) 603, 663
StyD4I CCNGG 3 cut(s) 159, 324, 715
TaaI ACNGT 3 cut(s) 211, 549, 571
TaqI TCGA 4 cut(s) 299, 396, 654, 727
TasI AATT 5 cut(s) 6, 83, 177, 219, 483
TauI GCSGC 2 cut(s) 319, 612
TfiI GAWTC 2 cut(s) 651, 729
Tru1I TTAA 2 cut(s) 180, 224
Tru9I TTAA 2 cut(s) 180, 224
TscAI CASTG 2 cut(s) 393, 598
TseFI GTSAC 1 cut(s) 454
TseI GCWGC 1 cut(s) 612
Tsp45I GTSAC 1 cut(s) 454
TspDTI ATGAA 2 cut(s) 372, 488
TspGWI ACGGA 1 cut(s) 22
TspRI CASTG 2 cut(s) 393, 598
VpaK11BI GGWCC 1 cut(s) 281
XceI RCATGY 2 cut(s) 413, 674
XhoI CTCGAG 1 cut(s) 395
XmnI GAANNNNTTC 1 cut(s) 531
XspI CTAG 2 cut(s) 603, 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.