Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007385.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

23855 .. 27511

Gene Structure 3657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atgatgagcatccagttagagtctcacaaaaatggaaatggggggtcagagctgcaaaaagatgaaaatggcgggggggtgtcagaatcacagaaagatggaaatgggagatgcaaaatctcaaatgggacttctggtaaagatgctaaactagtggaaagctccggcagcacaattgatggtcgtattgtcatgggactctttgggaaggctgttcctaagacagcaggggagaaaggcattggaaagagcggaaaacctctccattacaagggtaccaaatttcacaggattattcccagcttcatgcttcagggaggtgatttcactctcggtgacgggagaggtggagaatcaatttatggagagaagtttgctgatgagaatttcaagttgaagcatactggaccagggcttttgtcgatggcaaatgctgggccagacaccaatggttcacaattcttcatcaccactgtgacaactagctggttggatggcagacatgttgtatttggaaaggtgctgtctggcatggatgtggtttacaaggttgaagctgaaggaagtcagggtggaacacccaagagcaaagttgtgatcgctgacagtggcgaacttcctctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005829 GO:0005911 GO:0006464 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016018 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0022622 GO:0030054 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0055044 GO:0071704 GO:0097708 GO:0098791 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

208

Amino Acids

21.75

Weight (kDa)

8.55

Isoelectric Point (pI)

14.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	60 - 202	1.1e-39	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	275
AccB1I	GGYRCC	1 cut(s)	275
AccBSI	CCGCTC	1 cut(s)	252
AciI	CCGC	2 cut(s)	72, 252
AcsI	RAATTY	2 cut(s)	281, 385
AcuI	CTGAAG	2 cut(s)	296, 579
AfaI	GTAC	1 cut(s)	277
AfiI	CCNNNNNNNGG	1 cut(s)	271
AflIII	ACRYGT	1 cut(s)	502
AgsI	TTSAA	3 cut(s)	391, 397, 554
AhlI	ACTAGT	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	409
AleI	CACNNNNGTG	1 cut(s)	473
AluBI	AGCT	5 cut(s)	52, 162, 303, 486, 557
AluI	AGCT	5 cut(s)	52, 162, 303, 486, 557
Alw26I	GTCTC	1 cut(s)	27
AoxI	GGCC	1 cut(s)	437
ApeKI	GCWGC	2 cut(s)	52, 168
ApoI	RAATTY	2 cut(s)	281, 385
Asp718I	GGTACC	1 cut(s)	275
AspS9I	GGNCC	2 cut(s)	407, 437
AsuHPI	GGTGA	3 cut(s)	332, 347, 460
AvaII	GGWCC	1 cut(s)	407
BaeI	ACNNNNGTAYC	2 cut(s)	259, 292
BanI	GGYRCC	1 cut(s)	275
BbvI	GCAGC	2 cut(s)	39, 180
BccI	CCATC	4 cut(s)	92, 173, 418, 488
BciT130I	CCWGG	1 cut(s)	411
BcoDI	GTCTC	1 cut(s)	27
BcuI	ACTAGT	1 cut(s)	151
BfaI	CTAG	2 cut(s)	152, 483
BisI	GCNGC	2 cut(s)	53, 169
BlsI	GCNGC	2 cut(s)	54, 170
Bme1390I	CCNGG	1 cut(s)	411
Bme18I	GGWCC	1 cut(s)	407
BmgT120I	GGNCC	2 cut(s)	407, 437
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	1 cut(s)	411
BmsI	GCATC	3 cut(s)	18, 101, 133
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	410
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse1I	ACTGG	2 cut(s)	13, 409
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	411
BseDI	CCNNGG	1 cut(s)	410
BseGI	GGATG	3 cut(s)	9, 499, 541
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseNI	ACTGG	2 cut(s)	13, 409
BseXI	GCAGC	2 cut(s)	39, 180
BseYI	CCCAGC	2 cut(s)	299, 434
BshFI	GGCC	1 cut(s)	439
BshNI	GGYRCC	1 cut(s)	275
BsiSI	CCGG	1 cut(s)	165
BslFI	GGGAC	2 cut(s)	142, 210
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	1 cut(s)	27
BsmFI	GGGAC	2 cut(s)	142, 210
BsnI	GGCC	1 cut(s)	439
Bsp143I	GATC	1 cut(s)	597
BspACI	CCGC	2 cut(s)	72, 252
BspANI	GGCC	1 cut(s)	439
BspLI	GGNNCC	1 cut(s)	277
BspT107I	GGYRCC	1 cut(s)	275
BsrBI	CCGCTC	1 cut(s)	252
BsrI	ACTGG	2 cut(s)	13, 409
BssECI	CCNNGG	1 cut(s)	410
BssMI	GATC	1 cut(s)	597
Bst2UI	CCWGG	1 cut(s)	411
Bst4CI	ACNGT	2 cut(s)	475, 608
BstDEI	CTNAG	1 cut(s)	219
BstF5I	GGATG	3 cut(s)	9, 499, 541
BstKTI	GATC	1 cut(s)	600
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	597
BstMWI	GCNNNNNNNGC	1 cut(s)	168
BstNI	CCWGG	1 cut(s)	411
BstNSI	RCATGY	1 cut(s)	506
BstSCI	CCNGG	1 cut(s)	409
BstV1I	GCAGC	2 cut(s)	39, 180
BsuRI	GGCC	1 cut(s)	439
BtsCI	GGATG	3 cut(s)	9, 499, 541
BtsIMutI	CAGTG	2 cut(s)	471, 613
Cfr13I	GGNCC	2 cut(s)	407, 437
Csp6I	GTAC	1 cut(s)	276
CviAII	CATG	4 cut(s)	193, 307, 503, 532
CviJI	RGCY	8 cut(s)	52, 162, 212, 303, 415, 439, 486, 557
CviKI_1	RGCY	8 cut(s)	52, 162, 212, 303, 415, 439, 486, 557
CviQI	GTAC	1 cut(s)	276
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	1 cut(s)	599
DpnII	GATC	1 cut(s)	597
Eco47I	GGWCC	1 cut(s)	407
Eco57I	CTGAAG	2 cut(s)	296, 579
EcoRII	CCWGG	1 cut(s)	409
FaeI	CATG	4 cut(s)	196, 310, 506, 535
FaiI	YATR	6 cut(s)	194, 308, 363, 402, 504, 533
FaqI	GGGAC	2 cut(s)	142, 210
FatI	CATG	4 cut(s)	192, 306, 502, 531
FauI	CCCGC	1 cut(s)	65
Fnu4HI	GCNGC	2 cut(s)	53, 169
FokI	GGATG	2 cut(s)	506, 548
Fsp4HI	GCNGC	2 cut(s)	53, 169
FspBI	CTAG	2 cut(s)	152, 483
GluI	GCNGC	2 cut(s)	53, 169
GsaI	CCCAGC	2 cut(s)	303, 438
HaeIII	GGCC	1 cut(s)	439
HapII	CCGG	1 cut(s)	165
Hin1II	CATG	4 cut(s)	196, 310, 506, 535
HinfI	GANTC	4 cut(s)	20, 86, 198, 353
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	3 cut(s)	332, 347, 460
Hpy166II	GTNNAC	2 cut(s)	455, 544
Hpy188I	TCNGA	2 cut(s)	49, 85
Hpy8I	GTNNAC	2 cut(s)	455, 544
HpyAV	CCTTC	2 cut(s)	202, 554
HpyCH4III	ACNGT	2 cut(s)	475, 608
HpyCH4V	TGCA	2 cut(s)	55, 114
HpyF10VI	GCNNNNNNNGC	1 cut(s)	168
HpyF3I	CTNAG	1 cut(s)	219
Hsp92II	CATG	4 cut(s)	196, 310, 506, 535
KpnI	GGTACC	1 cut(s)	279
Kzo9I	GATC	1 cut(s)	597
LmnI	GCTCC	1 cut(s)	167
Lsp1109I	GCAGC	2 cut(s)	39, 180
LweI	GCATC	3 cut(s)	18, 101, 133
MaeI	CTAG	2 cut(s)	152, 483
MaeIII	GTNAC	2 cut(s)	335, 475
MalI	GATC	1 cut(s)	599
MbiI	CCGCTC	1 cut(s)	252
MboI	GATC	1 cut(s)	597
MboII	GAAGA	1 cut(s)	454
MfeI	CAATTG	1 cut(s)	174
MluCI	AATT	5 cut(s)	174, 281, 357, 385, 458
MlyI	GAGTC	2 cut(s)	29, 192
MmeI	TCCRAC	1 cut(s)	471
MnlI	CCTC	3 cut(s)	270, 311, 338
MseI	TTAA	1 cut(s)	625
MslI	CAYNNNNRTG	3 cut(s)	30, 473, 536
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	1 cut(s)	411
MunI	CAATTG	1 cut(s)	174
MvaI	CCWGG	1 cut(s)	411
MwoI	GCNNNNNNNGC	1 cut(s)	168
NdeII	GATC	1 cut(s)	597
NlaIII	CATG	4 cut(s)	196, 310, 506, 535
NlaIV	GGNNCC	1 cut(s)	277
NmuCI	GTSAC	2 cut(s)	335, 475
NspI	RCATGY	1 cut(s)	506
OliI	CACNNNNGTG	1 cut(s)	473
PciI	ACATGT	1 cut(s)	502
PfeI	GAWTC	2 cut(s)	86, 353
PkrI	GCNGC	2 cut(s)	54, 170
PleI	GAGTC	2 cut(s)	28, 192
PpsI	GAGTC	2 cut(s)	28, 192
PscI	ACATGT	1 cut(s)	502
Psp6I	CCWGG	1 cut(s)	409
PspFI	CCCAGC	2 cut(s)	299, 434
PspGI	CCWGG	1 cut(s)	409
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	2 cut(s)	407, 437
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
RseI	CAYNNNNRTG	3 cut(s)	30, 473, 536
SaqAI	TTAA	1 cut(s)	625
SatI	GCNGC	2 cut(s)	53, 169
Sau3AI	GATC	1 cut(s)	597
Sau96I	GGNCC	2 cut(s)	407, 437
SchI	GAGTC	2 cut(s)	29, 192
ScrFI	CCNGG	1 cut(s)	411
SfaNI	GCATC	3 cut(s)	18, 101, 133
SinI	GGWCC	1 cut(s)	407
SmiMI	CAYNNNNRTG	3 cut(s)	30, 473, 536
SpeI	ACTAGT	1 cut(s)	151
Sse9I	AATT	5 cut(s)	174, 281, 357, 385, 458
SsiI	CCGC	2 cut(s)	72, 252
SspMI	CTAG	2 cut(s)	152, 483
StyD4I	CCNGG	1 cut(s)	409
TaaI	ACNGT	2 cut(s)	475, 608
TaqI	TCGA	1 cut(s)	422
TasI	AATT	5 cut(s)	174, 281, 357, 385, 458
TfiI	GAWTC	2 cut(s)	86, 353
Tru1I	TTAA	1 cut(s)	625
Tru9I	TTAA	1 cut(s)	625
TscAI	CASTG	2 cut(s)	478, 613
TseFI	GTSAC	2 cut(s)	335, 475
TseI	GCWGC	2 cut(s)	52, 168
Tsp45I	GTSAC	2 cut(s)	335, 475
TspDTI	ATGAA	3 cut(s)	78, 295, 454
TspRI	CASTG	2 cut(s)	478, 613
VpaK11BI	GGWCC	1 cut(s)	407
XapI	RAATTY	2 cut(s)	281, 385
XceI	RCATGY	1 cut(s)	506
XspI	CTAG	2 cut(s)	152, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.