Rmu_sc0007394.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007394.1
N/A
Physical Location & Seq
Forward (+)
759 .. 5218
4460 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 645 bp
atgaaggcgtccgataatcggaggcggagggagggggtttccggcgacggtgatgttgaggctcctccggtgaaaatcgttcgacaccaccacctaggatcgaaagaggatgcttccacgagcaaaacaagatcgtttcgtgctcagccgtcgttggaggagagagttccgatcagttccgacaccgtcaatctttgctgcttcgatccgccgccttggaccagaatcggagcaagttgccacaacagggaggaccgcacggaggaggccgacaaacagaactgggtagatgtcgtggccttggttcgcaggagttcgccaaaaaactcgggtgttgaaatcgggttcgggtctgttcggtcaatgtggaagctatctggcatggtggacatgcaagctagggtaaacaagttactgtttatcttatccaatgatcgagcgagatatatacagggtgaagaaagggaaccctggtgttttcaaattaccatgatctcgttaaatgagtatgatggtttctcggatatcaagatggtatcactagatttcgtctgtatttgggtcaagttgcaaggaatattgtcggcgctacttactatcgatactctccgtcttgtgggggagatactcagactggttctgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

214

Amino Acids

24.25

Weight (kDa)

7.66

Isoelectric Point (pI)

52.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 25, 209, 212, 256
AclWI GGATC 2 cut(s) 106, 200
AcyI GRCGYC 1 cut(s) 8
AfiI CCNNNNNNNGG 4 cut(s) 18, 247, 262, 616
AgsI TTSAA 2 cut(s) 338, 482
AjnI CCWGG 1 cut(s) 470
AluBI AGCT 2 cut(s) 373, 398
AluI AGCT 2 cut(s) 373, 398
Alw21I GWGCWC 1 cut(s) 145
AlwI GGATC 2 cut(s) 106, 200
Ama87I CYCGRG 1 cut(s) 328
AoxI GGCC 2 cut(s) 267, 297
ApeKI GCWGC 1 cut(s) 198
AspA2I CCTAGG 1 cut(s) 94
AspLEI GCGC 1 cut(s) 589
AspS9I GGNCC 2 cut(s) 219, 253
AsuHPI GGTGA 3 cut(s) 62, 82, 467
AvaI CYCGRG 1 cut(s) 328
AvaII GGWCC 2 cut(s) 219, 253
AvrII CCTAGG 1 cut(s) 94
BauI CACGAG 1 cut(s) 118
Bbv12I GWGCWC 1 cut(s) 145
BbvI GCAGC 1 cut(s) 185
BccI CCATC 2 cut(s) 506, 526
BceAI ACGGC 1 cut(s) 133
BciT130I CCWGG 1 cut(s) 472
BfaI CTAG 3 cut(s) 95, 399, 542
BfoI RGCGCY 1 cut(s) 590
BisI GCNGC 2 cut(s) 199, 212
BlnI CCTAGG 1 cut(s) 94
BlpI GCTNAGC 1 cut(s) 144
BlsI GCNGC 2 cut(s) 200, 213
Bme1390I CCNGG 1 cut(s) 472
Bme18I GGWCC 2 cut(s) 219, 253
BmeT110I CYCGRG 1 cut(s) 328
BmgT120I GGNCC 2 cut(s) 219, 253
BmiI GGNNCC 2 cut(s) 63, 468
BmrFI CCNGG 1 cut(s) 472
BmrI ACTGGG 1 cut(s) 292
BmsI GCATC 1 cut(s) 100
BmuI ACTGGG 1 cut(s) 292
Bpu1102I GCTNAGC 1 cut(s) 144
Bsa29I ATCGAT 1 cut(s) 600
BsaHI GRCGYC 1 cut(s) 8
BsaJI CCNNGG 4 cut(s) 94, 215, 300, 470
BsaWI WCCGGW 1 cut(s) 67
Bsc4I CCNNNNNNNGG 4 cut(s) 18, 247, 262, 616
Bse1I ACTGG 2 cut(s) 287, 639
BseBI CCWGG 1 cut(s) 472
BseCI ATCGAT 1 cut(s) 600
BseDI CCNNGG 4 cut(s) 94, 215, 300, 470
BseGI GGATG 1 cut(s) 115
BseLI CCNNNNNNNGG 4 cut(s) 18, 247, 262, 616
BseMII CTCAG 2 cut(s) 158, 643
BseNI ACTGG 2 cut(s) 287, 639
BseRI GAGGAG 3 cut(s) 54, 173, 278
BseXI GCAGC 1 cut(s) 185
BshFI GGCC 2 cut(s) 269, 299
BshVI ATCGAT 1 cut(s) 600
BsiHKAI GWGCWC 1 cut(s) 145
BsiHKCI CYCGRG 1 cut(s) 328
BsiSI CCGG 2 cut(s) 42, 68
BslI CCNNNNNNNGG 4 cut(s) 18, 247, 262, 616
BsnI GGCC 2 cut(s) 269, 299
BsoBI CYCGRG 1 cut(s) 328
Bsp1286I GDGCHC 1 cut(s) 145
Bsp143I GATC 6 cut(s) 98, 131, 171, 205, 433, 492
Bsp1720I GCTNAGC 1 cut(s) 144
BspACI CCGC 4 cut(s) 25, 209, 212, 256
BspANI GGCC 2 cut(s) 269, 299
BspCNI CTCAG 2 cut(s) 157, 642
BspDI ATCGAT 1 cut(s) 600
BspLI GGNNCC 2 cut(s) 63, 468
BspPI GGATC 2 cut(s) 106, 200
BsrI ACTGG 2 cut(s) 287, 639
BssECI CCNNGG 4 cut(s) 94, 215, 300, 470
BssMI GATC 6 cut(s) 98, 131, 171, 205, 433, 492
BssNI GRCGYC 1 cut(s) 8
BssSI CACGAG 1 cut(s) 118
BssT1I CCWWGG 3 cut(s) 94, 215, 300
Bst2BI CACGAG 1 cut(s) 118
Bst2UI CCWGG 1 cut(s) 472
Bst4CI ACNGT 3 cut(s) 50, 187, 417
BstACI GRCGYC 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 396
BstDEI CTNAG 2 cut(s) 144, 629
BstF5I GGATG 1 cut(s) 115
BstH2I RGCGCY 1 cut(s) 590
BstHHI GCGC 1 cut(s) 589
BstKTI GATC 6 cut(s) 101, 134, 174, 208, 436, 495
BstMBI GATC 6 cut(s) 98, 131, 171, 205, 433, 492
BstNI CCWGG 1 cut(s) 472
BstNSI RCATGY 1 cut(s) 394
BstSCI CCNGG 1 cut(s) 470
BstV1I GCAGC 1 cut(s) 185
Bsu15I ATCGAT 1 cut(s) 600
BsuRI GGCC 2 cut(s) 269, 299
BsuTUI ATCGAT 1 cut(s) 600
BtsCI GGATG 1 cut(s) 115
Cac8I GCNNGC 1 cut(s) 396
CfoI GCGC 1 cut(s) 589
Cfr13I GGNCC 2 cut(s) 219, 253
ClaI ATCGAT 1 cut(s) 600
CviAII CATG 3 cut(s) 382, 391, 490
CviJI RGCY 6 cut(s) 62, 148, 269, 299, 373, 398
CviKI_1 RGCY 6 cut(s) 62, 148, 269, 299, 373, 398
DdeI CTNAG 2 cut(s) 144, 629
DpnI GATC 6 cut(s) 100, 133, 173, 207, 435, 494
DpnII GATC 6 cut(s) 98, 131, 171, 205, 433, 492
EciI GGCGGA 2 cut(s) 40, 198
Eco130I CCWWGG 3 cut(s) 94, 215, 300
Eco32I GATATC 1 cut(s) 526
Eco47I GGWCC 2 cut(s) 219, 253
Eco88I CYCGRG 1 cut(s) 328
EcoRII CCWGG 1 cut(s) 470
EcoRV GATATC 1 cut(s) 526
EcoT14I CCWWGG 3 cut(s) 94, 215, 300
ErhI CCWWGG 3 cut(s) 94, 215, 300
FaeI CATG 3 cut(s) 385, 394, 493
FaiI YATR 6 cut(s) 383, 392, 447, 449, 491, 510
FatI CATG 3 cut(s) 381, 390, 489
Fnu4HI GCNGC 2 cut(s) 199, 212
FokI GGATG 1 cut(s) 122
Fsp4HI GCNGC 2 cut(s) 199, 212
FspBI CTAG 3 cut(s) 95, 399, 542
GlaI GCGC 1 cut(s) 588
GluI GCNGC 2 cut(s) 199, 212
HaeII RGCGCY 1 cut(s) 590
HaeIII GGCC 2 cut(s) 269, 299
HapII CCGG 2 cut(s) 42, 68
HhaI GCGC 1 cut(s) 589
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 3 cut(s) 385, 394, 493
Hin6I GCGC 1 cut(s) 587
HinP1I GCGC 1 cut(s) 587
HinfI GANTC 1 cut(s) 225
HpaII CCGG 2 cut(s) 42, 68
HphI GGTGA 3 cut(s) 62, 82, 467
Hpy166II GTNNAC 2 cut(s) 388, 406
Hpy188I TCNGA 7 cut(s) 13, 21, 171, 181, 230, 523, 632
Hpy188III TCNNGA 1 cut(s) 529
Hpy8I GTNNAC 2 cut(s) 388, 406
Hpy99I CGWCG 2 cut(s) 50, 154
HpyCH4III ACNGT 3 cut(s) 50, 187, 417
HpyCH4V TGCA 2 cut(s) 394, 571
HpyF3I CTNAG 2 cut(s) 144, 629
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 3 cut(s) 385, 394, 493
HspAI GCGC 1 cut(s) 587
Kzo9I GATC 6 cut(s) 98, 131, 171, 205, 433, 492
LmnI GCTCC 2 cut(s) 67, 230
Lsp1109I GCAGC 1 cut(s) 185
LweI GCATC 1 cut(s) 100
MaeI CTAG 3 cut(s) 95, 399, 542
MaeIII GTNAC 1 cut(s) 411
MalI GATC 6 cut(s) 100, 133, 173, 207, 435, 494
MboI GATC 6 cut(s) 98, 131, 171, 205, 433, 492
MboII GAAGA 1 cut(s) 470
MhlI GDGCHC 1 cut(s) 145
MluCI AATT 1 cut(s) 483
MmeI TCCRAC 2 cut(s) 135, 204
MseI TTAA 1 cut(s) 500
MspI CCGG 2 cut(s) 42, 68
MspR9I CCNGG 1 cut(s) 472
MvaI CCWGG 1 cut(s) 472
NdeII GATC 6 cut(s) 98, 131, 171, 205, 433, 492
NlaIII CATG 3 cut(s) 385, 394, 493
NlaIV GGNNCC 2 cut(s) 63, 468
NspI RCATGY 1 cut(s) 394
PfeI GAWTC 1 cut(s) 225
PflFI GACNNNGTC 1 cut(s) 185
PkrI GCNGC 2 cut(s) 200, 213
Psp6I CCWGG 1 cut(s) 470
PspGI CCWGG 1 cut(s) 470
PspN4I GGNNCC 2 cut(s) 63, 468
PspPI GGNCC 2 cut(s) 219, 253
PsyI GACNNNGTC 1 cut(s) 185
SaqAI TTAA 1 cut(s) 500
SatI GCNGC 2 cut(s) 199, 212
Sau3AI GATC 6 cut(s) 98, 131, 171, 205, 433, 492
Sau96I GGNCC 2 cut(s) 219, 253
ScrFI CCNGG 1 cut(s) 472
SduI GDGCHC 1 cut(s) 145
SetI ASST 3 cut(s) 96, 375, 400
SfaNI GCATC 1 cut(s) 100
SinI GGWCC 2 cut(s) 219, 253
Sse9I AATT 1 cut(s) 483
SsiI CCGC 4 cut(s) 25, 209, 212, 256
SspI AATATT 1 cut(s) 579
SspMI CTAG 3 cut(s) 95, 399, 542
StyD4I CCNGG 1 cut(s) 470
StyI CCWWGG 3 cut(s) 94, 215, 300
TaaI ACNGT 3 cut(s) 50, 187, 417
TaqI TCGA 5 cut(s) 82, 101, 204, 436, 600
TaqII GACCGA 1 cut(s) 348
TasI AATT 1 cut(s) 483
TauI GCSGC 1 cut(s) 214
TfiI GAWTC 1 cut(s) 225
Tru1I TTAA 1 cut(s) 500
Tru9I TTAA 1 cut(s) 500
TseI GCWGC 1 cut(s) 198
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 275, 599
Tth111I GACNNNGTC 1 cut(s) 185
VpaK11BI GGWCC 2 cut(s) 219, 253
XceI RCATGY 1 cut(s) 394
XmaJI CCTAGG 1 cut(s) 94
XspI CTAG 3 cut(s) 95, 399, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.