Rmu_sc0007404.1_g000001

PsbP domain-containing protein 1

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007404.1
N/A
Physical Location & Seq
Reverse (-)
1 .. 797
797 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 424 bp
atggcaaggttggtaatgatgcagcagcaccaacagcacagtccaccttccttctctcctcttccttctctctctgactttaatggccccaaactccatactcaactccagtataggagaaaggtatcacagctaaaagaagcattacatgttgcagcatcaaatgtaaagactcttacagtgagcctcactgagcaaatgtcaggtgaatcaaataagggtagtgctgatttttcgtccaagactaaagcttttgcagttcctaggaggaatgcaatggccttaatcttgtcaggttgcttcttccctcaagtcagtttgcaaagtcctgcatttgctcaacaaactgttgcgttgagggagtacatagatagttttgatggctactcattcaagtaccctaagaattggattcaagttaaag

Protein Analysis

141

Amino Acids

15.81

Weight (kDa)

9.88

Isoelectric Point (pI)

56.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 365, 398
AflIII ACRYGT 1 cut(s) 148
AgsI TTSAA 2 cut(s) 394, 416
AluBI AGCT 2 cut(s) 133, 251
AluI AGCT 2 cut(s) 133, 251
AoxI GGCC 2 cut(s) 85, 279
ApeKI GCWGC 3 cut(s) 22, 25, 155
AspA2I CCTAGG 1 cut(s) 263
AspS9I GGNCC 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 218
AvrII CCTAGG 1 cut(s) 263
BbvI GCAGC 3 cut(s) 34, 37, 167
BccI CCATC 1 cut(s) 374
BfaI CTAG 1 cut(s) 264
BisI GCNGC 3 cut(s) 23, 26, 156
BlnI CCTAGG 1 cut(s) 263
BlsI GCNGC 3 cut(s) 24, 27, 157
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 88
BmsI GCATC 2 cut(s) 9, 167
BpmI CTGGAG 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 294
BsaJI CCNNGG 1 cut(s) 263
Bse1I ACTGG 1 cut(s) 109
Bse3DI GCAATG 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 263
BseMI GCAATG 1 cut(s) 282
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 1 cut(s) 109
BseRI GAGGAG 1 cut(s) 48
BseXI GCAGC 3 cut(s) 34, 37, 167
BshFI GGCC 2 cut(s) 87, 281
BsmI GAATGC 1 cut(s) 277
BsnI GGCC 2 cut(s) 87, 281
BspANI GGCC 2 cut(s) 87, 281
BspCNI CTCAG 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 88
BsrDI GCAATG 1 cut(s) 282
BsrI ACTGG 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 263
BssT1I CCWWGG 1 cut(s) 263
Bst4CI ACNGT 3 cut(s) 41, 181, 349
Bst6I CTCTTC 1 cut(s) 66
BstDEI CTNAG 2 cut(s) 192, 402
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstNSI RCATGY 1 cut(s) 152
BstV1I GCAGC 3 cut(s) 34, 37, 167
BsuRI GGCC 2 cut(s) 87, 281
BtsIMutI CAGTG 2 cut(s) 186, 189
Cfr13I GGNCC 1 cut(s) 86
Csp6I GTAC 2 cut(s) 364, 397
CviAII CATG 1 cut(s) 149
CviJI RGCY 6 cut(s) 87, 133, 186, 251, 281, 384
CviKI_1 RGCY 6 cut(s) 87, 133, 186, 251, 281, 384
CviQI GTAC 2 cut(s) 364, 397
DdeI CTNAG 2 cut(s) 192, 402
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 263
EcoT14I CCWWGG 1 cut(s) 263
ErhI CCWWGG 1 cut(s) 263
FaeI CATG 1 cut(s) 152
FaiI YATR 4 cut(s) 99, 114, 150, 368
FatI CATG 1 cut(s) 148
Fnu4HI GCNGC 3 cut(s) 23, 26, 156
Fsp4HI GCNGC 3 cut(s) 23, 26, 156
FspBI CTAG 1 cut(s) 264
GluI GCNGC 3 cut(s) 23, 26, 156
GsuI CTGGAG 1 cut(s) 92
HaeIII GGCC 2 cut(s) 87, 281
Hin1II CATG 1 cut(s) 152
HindIII AAGCTT 1 cut(s) 249
HinfI GANTC 3 cut(s) 172, 209, 412
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 1 cut(s) 44
Hpy188I TCNGA 1 cut(s) 76
Hpy8I GTNNAC 1 cut(s) 44
HpyAV CCTTC 3 cut(s) 57, 61, 75
HpyCH4III ACNGT 3 cut(s) 41, 181, 349
HpyCH4V TGCA 6 cut(s) 22, 155, 257, 275, 322, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpyF3I CTNAG 2 cut(s) 192, 402
Hsp92II CATG 1 cut(s) 152
LpnPI CCDG 4 cut(s) 122, 189, 279, 342
Lsp1109I GCAGC 3 cut(s) 34, 37, 167
LweI GCATC 2 cut(s) 9, 167
MaeI CTAG 1 cut(s) 264
MboII GAAGA 2 cut(s) 53, 295
MluCI AATT 1 cut(s) 406
MlyI GAGTC 1 cut(s) 166
MnlI CCTC 5 cut(s) 69, 197, 261, 318, 351
MseI TTAA 3 cut(s) 81, 284, 420
Mva1269I GAATGC 1 cut(s) 277
MwoI GCNNNNNNNGC 1 cut(s) 34
NlaIII CATG 1 cut(s) 152
NlaIV GGNNCC 1 cut(s) 88
NspI RCATGY 1 cut(s) 152
PciI ACATGT 1 cut(s) 148
PctI GAATGC 1 cut(s) 277
PfeI GAWTC 2 cut(s) 209, 412
PkrI GCNGC 3 cut(s) 24, 27, 157
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
PscI ACATGT 1 cut(s) 148
PspN4I GGNNCC 1 cut(s) 88
PspPI GGNCC 1 cut(s) 86
RsaI GTAC 2 cut(s) 365, 398
RsaNI GTAC 2 cut(s) 364, 397
SaqAI TTAA 3 cut(s) 81, 284, 420
SatI GCNGC 3 cut(s) 23, 26, 156
Sau96I GGNCC 1 cut(s) 86
SchI GAGTC 1 cut(s) 166
SetI ASST 7 cut(s) 11, 49, 126, 135, 208, 253, 298
SfaNI GCATC 2 cut(s) 9, 167
SmlI CTYRAG 1 cut(s) 309
SmoI CTYRAG 1 cut(s) 309
Sse9I AATT 1 cut(s) 406
SspMI CTAG 1 cut(s) 264
StyI CCWWGG 1 cut(s) 263
TaaI ACNGT 3 cut(s) 41, 181, 349
TasI AATT 1 cut(s) 406
TatI WGTACW 1 cut(s) 363
TfiI GAWTC 2 cut(s) 209, 412
Tru1I TTAA 3 cut(s) 81, 284, 420
Tru9I TTAA 3 cut(s) 81, 284, 420
TscAI CASTG 2 cut(s) 186, 196
TseI GCWGC 3 cut(s) 22, 25, 155
TspRI CASTG 2 cut(s) 186, 196
XceI RCATGY 1 cut(s) 152
XmaJI CCTAGG 1 cut(s) 263
XspI CTAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.