Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007415.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

121634 .. 122466

Gene Structure 833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atggcgacggtgtcccctctggcgaaatacaagctcgtcttcctcggcgaccagtccgtcggcaaaaccagcatcatcacccgcttcatgtatgacaaattcgattcaacctatcaggctacgattggaattgattttctgtcgaaaaccatgtaccttgaagatcggacagttcgtttgcagctttgggatactgcagggcaagagaggtttaggagtctcattccaagctacatcagggattcttctgttgcagtaatcgtctatgatgtagctagtgagttactgtttagcatcttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006890 GO:0006891 GO:0008150 GO:0009506 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0016482 GO:0017076 GO:0019001 GO:0030054 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

100

Amino Acids

11.45

Weight (kDa)

6.15

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	9 - 93	1.2e-09	ADP-ribosylation factor family
Ras	PF00071	11 - 95	3.7e-32	Ras family
Roc	PF08477	11 - 93	1.1e-29	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	56
AciI	CCGC	1 cut(s)	82
AcsI	RAATTY	1 cut(s)	98
AfaI	GTAC	1 cut(s)	155
AgsI	TTSAA	2 cut(s)	108, 161
AluBI	AGCT	4 cut(s)	34, 184, 231, 275
AluI	AGCT	4 cut(s)	34, 184, 231, 275
Alw26I	GTCTC	1 cut(s)	224
ApeKI	GCWGC	1 cut(s)	181
ApoI	RAATTY	1 cut(s)	98
ArsI	GACNNNNNNTTYG	2 cut(s)	160, 192
AsuHPI	GGTGA	1 cut(s)	70
BbsI	GAAGAC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	193
BciVI	GTATCC	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	224
BfaI	CTAG	1 cut(s)	276
BfmI	CTRYAG	1 cut(s)	195
BfuI	GTATCC	1 cut(s)	184
BisI	GCNGC	1 cut(s)	182
BlsI	GCNGC	1 cut(s)	183
BmsI	GCATC	1 cut(s)	81
BpiI	GAAGAC	1 cut(s)	31
BsaJI	CCNNGG	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	52
BseDI	CCNNGG	1 cut(s)	43
BseNI	ACTGG	1 cut(s)	52
BseXI	GCAGC	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	224
Bsp143I	GATC	1 cut(s)	163
BspACI	CCGC	1 cut(s)	82
BspMAI	CTGCAG	1 cut(s)	199
BsrI	ACTGG	1 cut(s)	52
BssECI	CCNNGG	1 cut(s)	43
BssMI	GATC	1 cut(s)	163
Bst4CI	ACNGT	3 cut(s)	10, 172, 288
BstKTI	GATC	1 cut(s)	166
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	1 cut(s)	163
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	193
BstV2I	GAAGAC	1 cut(s)	31
BsuI	GTATCC	1 cut(s)	184
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	2 cut(s)	88, 151
CviJI	RGCY	5 cut(s)	34, 119, 184, 231, 275
CviKI_1	RGCY	5 cut(s)	34, 119, 184, 231, 275
CviQI	GTAC	1 cut(s)	154
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
FaeI	CATG	2 cut(s)	91, 154
FaiI	YATR	4 cut(s)	89, 93, 152, 267
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FatI	CATG	2 cut(s)	87, 150
FauI	CCCGC	1 cut(s)	89
Fnu4HI	GCNGC	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	182
FspBI	CTAG	1 cut(s)	276
GluI	GCNGC	1 cut(s)	182
Hin1II	CATG	2 cut(s)	91, 154
HinfI	GANTC	3 cut(s)	104, 217, 242
HphI	GGTGA	1 cut(s)	70
Hpy188I	TCNGA	1 cut(s)	168
Hpy99I	CGWCG	2 cut(s)	10, 62
HpyCH4III	ACNGT	3 cut(s)	10, 172, 288
HpyCH4V	TGCA	3 cut(s)	181, 197, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
Hsp92II	CATG	2 cut(s)	91, 154
Kzo9I	GATC	1 cut(s)	163
LpnPI	CCDG	6 cut(s)	5, 65, 82, 101, 183, 223
Lsp1109I	GCAGC	1 cut(s)	193
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	282
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	3 cut(s)	31, 173, 237
MluCI	AATT	2 cut(s)	98, 129
MlyI	GAGTC	1 cut(s)	226
MnlI	CCTC	3 cut(s)	27, 53, 201
MwoI	GCNNNNNNNGC	1 cut(s)	69
NdeII	GATC	1 cut(s)	163
NlaIII	CATG	2 cut(s)	91, 154
NmeAIII	GCCGAG	1 cut(s)	24
PcsI	WCGNNNNNNNCGW	1 cut(s)	172
PfeI	GAWTC	2 cut(s)	104, 242
PflFI	GACNNNGTC	1 cut(s)	10
PkrI	GCNGC	1 cut(s)	183
PleI	GAGTC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	225
PstI	CTGCAG	1 cut(s)	199
PsyI	GACNNNGTC	1 cut(s)	10
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SatI	GCNGC	1 cut(s)	182
Sau3AI	GATC	1 cut(s)	163
SchI	GAGTC	1 cut(s)	226
SetI	ASST	7 cut(s)	36, 113, 159, 186, 212, 233, 277
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	195
Sse9I	AATT	2 cut(s)	98, 129
SsiI	CCGC	1 cut(s)	82
SspMI	CTAG	1 cut(s)	276
TaaI	ACNGT	3 cut(s)	10, 172, 288
TaqI	TCGA	2 cut(s)	102, 143
TasI	AATT	2 cut(s)	98, 129
TfiI	GAWTC	2 cut(s)	104, 242
TseI	GCWGC	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	76
TspGWI	ACGGA	1 cut(s)	46
Tth111I	GACNNNGTC	1 cut(s)	10
XapI	RAATTY	1 cut(s)	98
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.