Rmu_sc0007415.1_g000038

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007415.1
N/A
Physical Location & Seq
Reverse (-)
182821 .. 186749
3929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007415.1_g000038.1.cds

Sequence Viewer

Length: 888 bp
ctgggctggccggaggcgtcccagacctcttctgggcagcgatcgaggtcagaggaggtcagggttgctggtttctgggcaaccacctcacctgcaactgcaggttctgtgcagaactgcagaatggtcgccggcgactccaccctactgcagaccggcttcacagacccccgccgtccattcggcaagccgcaccgcgtcgtcgacactcgatcgaggccggaggagcgatgtccgcactttttctgggttgcggacgtccaattgaacctctcttactttggtcacacaggcaccattcctccggaattaggaaacttaccatttcttattaatatggacttcagcaataacagtttccatggtatattgcctcaggaattggcccgcttgcgtcggttgaagtttatcagcttgggaaacaacaagttcatgggagtcattccgtcatggtttgggtccttattcaaacttcaagtattcagtttgtttggtaatcaattttcaggttccataccagctacaatcttcaacttacctgctctgcaaaagatagatttgagggataaccaactctcaggtcctataccatatgaggttggttatcttccaaatttagagatattgtcgctcgctcaaaataatctaaatggccatatcccatcctcaatcttcaatatctccacaataaaggaattatatctcgtcctcaatcagctttcaggcagcctcccagcagacataggccttgcgcttccaaaactagaagagtttggagcaggagcgaatcaccttagtggagtaatccccaaatccatctccaatgcttctgaatggactctgtggtggatcccaatttcaagttccaccatgcaaaagaaaaactag

Protein Analysis

295

Amino Acids

32.58

Weight (kDa)

8.93

Isoelectric Point (pI)

42.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 100
AatII GACGTC 1 cut(s) 261
Acc36I ACCTGC 3 cut(s) 92, 100, 547
AccB1I GGYRCC 1 cut(s) 293
AccI GTMKAC 1 cut(s) 204
AccII CGCG 1 cut(s) 198
AccIII TCCGGA 1 cut(s) 304
AciI CCGC 6 cut(s) 172, 191, 196, 236, 254, 388
AclWI GGATC 2 cut(s) 844, 857
AcoI YGGCCR 2 cut(s) 8, 652
AcsI RAATTY 1 cut(s) 613
AcuI CTGAAG 1 cut(s) 328
AcyI GRCGYC 2 cut(s) 17, 258
AfiI CCNNNNNNNGG 2 cut(s) 33, 311
AgsI TTSAA 7 cut(s) 268, 403, 469, 476, 532, 676, 861
AjuI GAANNNNNNNTTGG 2 cut(s) 847, 879
AleI CACNNNNGTG 1 cut(s) 795
AluBI AGCT 3 cut(s) 414, 521, 718
AluI AGCT 3 cut(s) 414, 521, 718
AlwI GGATC 2 cut(s) 844, 857
AlwNI CAGNNNCTG 1 cut(s) 107
Aor13HI TCCGGA 1 cut(s) 304
AoxI GGCC 5 cut(s) 8, 218, 384, 652, 745
ApeKI GCWGC 2 cut(s) 37, 726
ApoI RAATTY 1 cut(s) 613
AseI ATTAAT 1 cut(s) 333
AspLEI GCGC 1 cut(s) 754
AspS9I GGNCC 3 cut(s) 385, 459, 581
AsuHPI GGTGA 2 cut(s) 81, 782
AvaII GGWCC 2 cut(s) 459, 581
AxyI CCTNAGG 1 cut(s) 375
BalI TGGCCA 1 cut(s) 654
BamHI GGATCC 1 cut(s) 849
BanI GGYRCC 1 cut(s) 293
BbvI GCAGC 2 cut(s) 49, 738
BccI CCATC 2 cut(s) 670, 824
BceAI ACGGC 1 cut(s) 159
BcgI CGANNNNNNTGC 2 cut(s) 109, 143
BfaI CTAG 2 cut(s) 764, 886
BfmI CTRYAG 3 cut(s) 99, 118, 149
BfuAI ACCTGC 3 cut(s) 92, 100, 547
BisI GCNGC 3 cut(s) 38, 191, 727
BlsI GCNGC 3 cut(s) 39, 192, 728
Bme18I GGWCC 2 cut(s) 459, 581
BmgT120I GGNCC 3 cut(s) 385, 459, 581
BmiI GGNNCC 4 cut(s) 295, 460, 511, 851
BsaHI GRCGYC 2 cut(s) 17, 258
BsaJI CCNNGG 1 cut(s) 361
BsaWI WCCGGW 1 cut(s) 304
BsaXI ACNNNNNCTCC 2 cut(s) 286, 316
Bsc4I CCNNNNNNNGG 2 cut(s) 33, 311
Bse118I RCCGGY 2 cut(s) 131, 155
Bse21I CCTNAGG 1 cut(s) 375
BseAI TCCGGA 1 cut(s) 304
BseDI CCNNGG 1 cut(s) 361
BseGI GGATG 1 cut(s) 662
BseLI CCNNNNNNNGG 2 cut(s) 33, 311
BseMII CTCAG 2 cut(s) 389, 591
BseRI GAGGAG 2 cut(s) 68, 239
BseXI GCAGC 2 cut(s) 49, 738
BseYI CCCAGC 1 cut(s) 733
BsgI GTGCAG 1 cut(s) 131
Bsh1236I CGCG 1 cut(s) 198
Bsh1285I CGRYCG 2 cut(s) 44, 215
BshFI GGCC 5 cut(s) 10, 220, 386, 654, 747
BshNI GGYRCC 1 cut(s) 293
BsiEI CGRYCG 2 cut(s) 44, 215
BsiSI CCGG 5 cut(s) 11, 132, 156, 221, 305
BslFI GGGAC 1 cut(s) 4
BslI CCNNNNNNNGG 2 cut(s) 33, 311
BsmFI GGGAC 1 cut(s) 4
BsnI GGCC 5 cut(s) 10, 220, 386, 654, 747
Bsp13I TCCGGA 1 cut(s) 304
Bsp143I GATC 3 cut(s) 41, 212, 849
Bsp19I CCATGG 1 cut(s) 361
BspACI CCGC 6 cut(s) 172, 191, 196, 236, 254, 388
BspANI GGCC 5 cut(s) 10, 220, 386, 654, 747
BspCNI CTCAG 2 cut(s) 388, 590
BspEI TCCGGA 1 cut(s) 304
BspFNI CGCG 1 cut(s) 198
BspLI GGNNCC 4 cut(s) 295, 460, 511, 851
BspMAI CTGCAG 3 cut(s) 103, 122, 153
BspMI ACCTGC 3 cut(s) 92, 100, 547
BspPI GGATC 2 cut(s) 844, 857
BspT107I GGYRCC 1 cut(s) 293
BsrFI RCCGGY 2 cut(s) 131, 155
BssAI RCCGGY 2 cut(s) 131, 155
BssECI CCNNGG 1 cut(s) 361
BssMI GATC 3 cut(s) 41, 212, 849
BssNI GRCGYC 2 cut(s) 17, 258
BssT1I CCWWGG 1 cut(s) 361
Bst4CI ACNGT 1 cut(s) 356
Bst6I CTCTTC 2 cut(s) 34, 762
BstACI GRCGYC 2 cut(s) 17, 258
BstC8I GCNNGC 6 cut(s) 8, 133, 188, 388, 392, 633
BstDEI CTNAG 3 cut(s) 375, 577, 794
BstDSI CCRYGG 1 cut(s) 361
BstF5I GGATG 1 cut(s) 662
BstFNI CGCG 1 cut(s) 198
BstHHI GCGC 1 cut(s) 754
BstKTI GATC 3 cut(s) 44, 215, 852
BstMBI GATC 3 cut(s) 41, 212, 849
BstMCI CGRYCG 2 cut(s) 44, 215
BstMWI GCNNNNNNNGC 2 cut(s) 226, 235
BstSFI CTRYAG 3 cut(s) 99, 118, 149
BstUI CGCG 1 cut(s) 198
BstV1I GCAGC 2 cut(s) 49, 738
BstX2I RGATCY 1 cut(s) 849
BstYI RGATCY 1 cut(s) 849
Bsu36I CCTNAGG 1 cut(s) 375
BsuRI GGCC 5 cut(s) 10, 220, 386, 654, 747
BtgI CCRYGG 1 cut(s) 361
BtgZI GCGATG 1 cut(s) 244
BtsCI GGATG 1 cut(s) 662
BveI ACCTGC 3 cut(s) 92, 100, 547
Cac8I GCNNGC 6 cut(s) 8, 133, 188, 388, 392, 633
CaiI CAGNNNCTG 1 cut(s) 107
CfoI GCGC 1 cut(s) 754
Cfr10I RCCGGY 2 cut(s) 131, 155
Cfr13I GGNCC 3 cut(s) 385, 459, 581
CseI GACGC 3 cut(s) 6, 187, 383
CviAII CATG 4 cut(s) 362, 433, 450, 871
DdeI CTNAG 3 cut(s) 375, 577, 794
DpnI GATC 3 cut(s) 43, 214, 851
DpnII GATC 3 cut(s) 41, 212, 849
EaeI YGGCCR 2 cut(s) 8, 652
Eam1104I CTCTTC 2 cut(s) 34, 762
EarI CTCTTC 2 cut(s) 34, 762
Eco130I CCWWGG 1 cut(s) 361
Eco147I AGGCCT 1 cut(s) 747
Eco47I GGWCC 2 cut(s) 459, 581
Eco57I CTGAAG 1 cut(s) 328
Eco81I CCTNAGG 1 cut(s) 375
EcoO109I RGGNCCY 2 cut(s) 459, 581
EcoT14I CCWWGG 1 cut(s) 361
ErhI CCWWGG 1 cut(s) 361
FaeI CATG 4 cut(s) 365, 436, 453, 874
FaqI GGGAC 1 cut(s) 4
FatI CATG 4 cut(s) 361, 432, 449, 870
FauI CCCGC 2 cut(s) 179, 395
FauNDI CATATG 1 cut(s) 592
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 3 cut(s) 38, 191, 727
FokI GGATG 1 cut(s) 649
Fsp4HI GCNGC 3 cut(s) 38, 191, 727
FspBI CTAG 2 cut(s) 764, 886
GlaI GCGC 1 cut(s) 753
GluI GCNGC 3 cut(s) 38, 191, 727
GsaI CCCAGC 1 cut(s) 737
HaeIII GGCC 5 cut(s) 10, 220, 386, 654, 747
HapII CCGG 5 cut(s) 11, 132, 156, 221, 305
HgaI GACGC 3 cut(s) 6, 187, 383
HhaI GCGC 1 cut(s) 754
Hin1I GRCGYC 2 cut(s) 17, 258
Hin1II CATG 4 cut(s) 365, 436, 453, 874
Hin6I GCGC 1 cut(s) 752
HinP1I GCGC 1 cut(s) 752
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HinfI GANTC 4 cut(s) 137, 438, 787, 838
HpaII CCGG 5 cut(s) 11, 132, 156, 221, 305
HphI GGTGA 2 cut(s) 81, 782
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 2 cut(s) 52, 832
Hpy188III TCNNGA 2 cut(s) 305, 377
Hpy8I GTNNAC 1 cut(s) 205
Hpy99I CGWCG 3 cut(s) 203, 206, 399
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 7 cut(s) 95, 101, 112, 120, 151, 547, 874
HpyF10VI GCNNNNNNNGC 2 cut(s) 226, 235
HpyF3I CTNAG 3 cut(s) 375, 577, 794
HpySE526I ACGT 1 cut(s) 258
Hsp92I GRCGYC 2 cut(s) 17, 258
Hsp92II CATG 4 cut(s) 365, 436, 453, 874
HspAI GCGC 1 cut(s) 752
Kpn2I TCCGGA 1 cut(s) 304
KroI GCCGGC 1 cut(s) 131
KroNI GCCGGC 1 cut(s) 133
Kzo9I GATC 3 cut(s) 41, 212, 849
LmnI GCTCC 3 cut(s) 226, 776, 782
Lsp1109I GCAGC 2 cut(s) 49, 738
MaeI CTAG 2 cut(s) 764, 886
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 1 cut(s) 284
MalI GATC 3 cut(s) 43, 214, 851
MboI GATC 3 cut(s) 41, 212, 849
MboII GAAGA 5 cut(s) 21, 520, 599, 664, 779
MfeI CAATTG 1 cut(s) 263
MflI RGATCY 1 cut(s) 849
MlsI TGGCCA 1 cut(s) 654
MluCI AATT 7 cut(s) 263, 308, 380, 500, 613, 695, 855
MluNI TGGCCA 1 cut(s) 654
MlyI GAGTC 3 cut(s) 131, 447, 832
Mox20I TGGCCA 1 cut(s) 654
MreI CGCCGGCG 1 cut(s) 131
MroI TCCGGA 1 cut(s) 304
MroNI GCCGGC 1 cut(s) 131
MscI TGGCCA 1 cut(s) 654
MseI TTAA 1 cut(s) 333
MslI CAYNNNNRTG 1 cut(s) 795
Msp20I TGGCCA 1 cut(s) 654
MspI CCGG 5 cut(s) 11, 132, 156, 221, 305
MunI CAATTG 1 cut(s) 263
MvnI CGCG 1 cut(s) 198
MwoI GCNNNNNNNGC 2 cut(s) 226, 235
NaeI GCCGGC 1 cut(s) 133
NcoI CCATGG 1 cut(s) 361
NdeI CATATG 1 cut(s) 592
NdeII GATC 3 cut(s) 41, 212, 849
NgoMIV GCCGGC 1 cut(s) 131
NlaIII CATG 4 cut(s) 365, 436, 453, 874
NlaIV GGNNCC 4 cut(s) 295, 460, 511, 851
NmuCI GTSAC 1 cut(s) 284
OliI CACNNNNGTG 1 cut(s) 795
PaqCI CACCTGC 1 cut(s) 100
PceI AGGCCT 1 cut(s) 747
PdiI GCCGGC 1 cut(s) 133
PfeI GAWTC 1 cut(s) 787
PkrI GCNGC 3 cut(s) 39, 192, 728
Ple19I CGATCG 2 cut(s) 44, 215
PleI GAGTC 3 cut(s) 131, 446, 832
PpsI GAGTC 3 cut(s) 131, 446, 832
PpuMI RGGWCCY 2 cut(s) 459, 581
PshBI ATTAAT 1 cut(s) 333
Psp5II RGGWCCY 2 cut(s) 459, 581
PspFI CCCAGC 1 cut(s) 733
PspN4I GGNNCC 4 cut(s) 295, 460, 511, 851
PspPI GGNCC 3 cut(s) 385, 459, 581
PspPPI RGGWCCY 2 cut(s) 459, 581
PsrI GAACNNNNNNTAC 2 cut(s) 260, 292
PstI CTGCAG 3 cut(s) 103, 122, 153
PstNI CAGNNNCTG 1 cut(s) 107
PsuI RGATCY 1 cut(s) 849
PvuI CGATCG 2 cut(s) 44, 215
RseI CAYNNNNRTG 1 cut(s) 795
SalI GTCGAC 1 cut(s) 203
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 3 cut(s) 38, 191, 727
Sau3AI GATC 3 cut(s) 41, 212, 849
Sau96I GGNCC 3 cut(s) 385, 459, 581
SchI GAGTC 3 cut(s) 131, 447, 832
SfcI CTRYAG 3 cut(s) 99, 118, 149
SgrAI CRCCGGYG 1 cut(s) 131
SinI GGWCC 2 cut(s) 459, 581
SmiMI CAYNNNNRTG 1 cut(s) 795
Sse9I AATT 7 cut(s) 263, 308, 380, 500, 613, 695, 855
SseBI AGGCCT 1 cut(s) 747
SsiI CCGC 6 cut(s) 172, 191, 196, 236, 254, 388
SspMI CTAG 2 cut(s) 764, 886
StuI AGGCCT 1 cut(s) 747
StyI CCWWGG 1 cut(s) 361
TaaI ACNGT 1 cut(s) 356
TaiI ACGT 1 cut(s) 261
TaqI TCGA 4 cut(s) 44, 204, 211, 215
TasI AATT 7 cut(s) 263, 308, 380, 500, 613, 695, 855
TauI GCSGC 1 cut(s) 193
TfiI GAWTC 1 cut(s) 787
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TseFI GTSAC 1 cut(s) 284
TseI GCWGC 2 cut(s) 37, 726
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 1 cut(s) 421
TspGWI ACGGA 1 cut(s) 435
VpaK11BI GGWCC 2 cut(s) 459, 581
VspI ATTAAT 1 cut(s) 333
XapI RAATTY 1 cut(s) 613
XcmI CCANNNNNNNNNTGG 1 cut(s) 29
XmiI GTMKAC 1 cut(s) 204
XspI CTAG 2 cut(s) 764, 886
ZraI GACGTC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.