Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007423.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1004

Gene Structure 1003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 436 bp

atgttcgacaacttgatggacgccgtttactctgcttgcaaggctatcgggttcaccgatatagagttcgtggcggccgagaccggctggccttcggcttgcgagttcccggtctgctcggttcagaacgccgtggactacaacgcgaacttgatcaagcacgtgaactccggcaagggaactcctttgatgcctaacaggaagttcgagacttacatctttgccttgttcaatgagaacgagaagcccgggcccctcgccgagaagaactgggggctgttcaagcctgacatgactccggtttacaatgccggtgttatgcgaaaccaacaggcattaccaaaccaaccagctcgaccagttgtcccagccaaaccaggcagaggagcaaagccagttgcacctgttgctggaggcaagaagtggtgtgtagcga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

145

Amino Acids

15.76

Weight (kDa)

8.69

Isoelectric Point (pI)

31.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	1 - 103	6.8e-34	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	146
AciI	CCGC	1 cut(s)	74
AcoI	YGGCCR	1 cut(s)	75
AcvI	CACGTG	1 cut(s)	163
AcyI	GRCGYC	1 cut(s)	21
AfiI	CCNNNNNNNGG	2 cut(s)	383, 410
AgsI	TTSAA	2 cut(s)	232, 283
AhdI	GACNNNNNGTC	1 cut(s)	362
AjnI	CCWGG	1 cut(s)	376
AluBI	AGCT	1 cut(s)	353
AluI	AGCT	1 cut(s)	353
Alw26I	GTCTC	2 cut(s)	74, 203
Ama87I	CYCGRG	1 cut(s)	248
AoxI	GGCC	3 cut(s)	75, 89, 251
ApaI	GGGCCC	1 cut(s)	255
AspS9I	GGNCC	2 cut(s)	251, 252
AsuC2I	CCSGG	3 cut(s)	110, 249, 250
AsuHPI	GGTGA	1 cut(s)	46
AvaI	CYCGRG	1 cut(s)	248
BaeGI	GKGCMC	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	255
BbrPI	CACGTG	1 cut(s)	163
BccI	CCATC	1 cut(s)	10
BceAI	ACGGC	2 cut(s)	8, 116
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BciT130I	CCWGG	1 cut(s)	378
BclI	TGATCA	1 cut(s)	153
BcnI	CCSGG	3 cut(s)	110, 249, 250
BcoDI	GTCTC	2 cut(s)	74, 203
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	4 cut(s)	110, 249, 250, 378
BmeRI	GACNNNNNGTC	1 cut(s)	362
BmeT110I	CYCGRG	1 cut(s)	248
BmgT120I	GGNCC	2 cut(s)	251, 252
BmiI	GGNNCC	2 cut(s)	253, 254
BmrFI	CCNGG	4 cut(s)	110, 249, 250, 378
BmrI	ACTGGG	1 cut(s)	280
BmsI	GCATC	1 cut(s)	180
BmuI	ACTGGG	1 cut(s)	280
BpmI	CTGGAG	1 cut(s)	432
BpuMI	CCSGG	3 cut(s)	110, 249, 250
BsaAI	YACGTR	1 cut(s)	163
BsaHI	GRCGYC	1 cut(s)	21
BsaI	GGTCTC	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	132, 248
BsaWI	WCCGGW	1 cut(s)	298
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	2 cut(s)	383, 410
Bse118I	RCCGGY	2 cut(s)	83, 311
Bse1I	ACTGG	3 cut(s)	275, 359, 395
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	2 cut(s)	132, 248
BseLI	CCNNNNNNNGG	2 cut(s)	383, 410
BseNI	ACTGG	3 cut(s)	275, 359, 395
BseRI	GAGGAG	1 cut(s)	399
BseSI	GKGCMC	1 cut(s)	255
BseX3I	CGGCCG	1 cut(s)	75
BseYI	CCCAGC	1 cut(s)	367
Bsh1236I	CGCG	1 cut(s)	146
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	3 cut(s)	77, 91, 253
BsiEI	CGRYCG	1 cut(s)	78
BsiHKCI	CYCGRG	1 cut(s)	248
BsiSI	CCGG	6 cut(s)	84, 110, 171, 249, 299, 312
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	2 cut(s)	383, 410
BsmAI	GTCTC	2 cut(s)	74, 203
BsmFI	GGGAC	1 cut(s)	350
BsnI	GGCC	3 cut(s)	77, 91, 253
Bso31I	GGTCTC	1 cut(s)	74
BsoBI	CYCGRG	1 cut(s)	248
Bsp120I	GGGCCC	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	1 cut(s)	153
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	3 cut(s)	77, 91, 253
BspFNI	CGCG	1 cut(s)	146
BspLI	GGNNCC	2 cut(s)	253, 254
BspTNI	GGTCTC	1 cut(s)	74
BsrFI	RCCGGY	2 cut(s)	83, 311
BsrI	ACTGG	3 cut(s)	275, 359, 395
BssAI	RCCGGY	2 cut(s)	83, 311
BssECI	CCNNGG	2 cut(s)	132, 248
BssMI	GATC	1 cut(s)	153
BssNI	GRCGYC	1 cut(s)	21
Bst2UI	CCWGG	1 cut(s)	378
BstACI	GRCGYC	1 cut(s)	21
BstAPI	GCANNNNNTGC	1 cut(s)	407
BstBAI	YACGTR	1 cut(s)	163
BstC8I	GCNNGC	3 cut(s)	37, 89, 100
BstDSI	CCRYGG	1 cut(s)	132
BstFNI	CGCG	1 cut(s)	146
BstKTI	GATC	1 cut(s)	156
BstMAI	GTCTC	2 cut(s)	74, 203
BstMBI	GATC	1 cut(s)	153
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 283, 407
BstNI	CCWGG	1 cut(s)	378
BstSCI	CCNGG	4 cut(s)	108, 247, 248, 376
BstSLI	GKGCMC	1 cut(s)	255
BstUI	CGCG	1 cut(s)	146
BstZI	CGGCCG	1 cut(s)	75
BsuRI	GGCC	3 cut(s)	77, 91, 253
BtgI	CCRYGG	1 cut(s)	132
Cac8I	GCNNGC	3 cut(s)	37, 89, 100
Cfr10I	RCCGGY	2 cut(s)	83, 311
Cfr13I	GGNCC	2 cut(s)	251, 252
Cfr9I	CCCGGG	1 cut(s)	248
CseI	GACGC	1 cut(s)	29
CviAII	CATG	1 cut(s)	292
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
DriI	GACNNNNNGTC	1 cut(s)	362
EaeI	YGGCCR	1 cut(s)	75
EagI	CGGCCG	1 cut(s)	75
Eam1105I	GACNNNNNGTC	1 cut(s)	362
EclXI	CGGCCG	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	255
Eco31I	GGTCTC	1 cut(s)	74
Eco52I	CGGCCG	1 cut(s)	75
Eco72I	CACGTG	1 cut(s)	163
Eco88I	CYCGRG	1 cut(s)	248
EcoO109I	RGGNCCY	1 cut(s)	252
EcoRII	CCWGG	1 cut(s)	376
EcoT38I	GRGCYC	1 cut(s)	255
FaeI	CATG	1 cut(s)	295
FaiI	YATR	3 cut(s)	62, 293, 320
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	1 cut(s)	291
FbaI	TGATCA	1 cut(s)	153
Fnu4HI	GCNGC	1 cut(s)	75
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	1 cut(s)	75
GluI	GCNGC	1 cut(s)	75
GsaI	CCCAGC	1 cut(s)	371
GsuI	CTGGAG	1 cut(s)	432
HaeIII	GGCC	3 cut(s)	77, 91, 253
HapII	CCGG	6 cut(s)	84, 110, 171, 249, 299, 312
HgaI	GACGC	1 cut(s)	29
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	1 cut(s)	295
HinfI	GANTC	1 cut(s)	295
HpaII	CCGG	6 cut(s)	84, 110, 171, 249, 299, 312
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	5 cut(s)	28, 54, 136, 166, 304
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	5 cut(s)	28, 54, 136, 166, 304
HpyAV	CCTTC	1 cut(s)	102
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	2 cut(s)	39, 401
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 283, 407
HpySE526I	ACGT	1 cut(s)	162
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	1 cut(s)	295
Ksp22I	TGATCA	1 cut(s)	153
Kzo9I	GATC	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	386
LweI	GCATC	1 cut(s)	180
MaeII	ACGT	1 cut(s)	162
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MboII	GAAGA	1 cut(s)	277
MhlI	GDGCHC	1 cut(s)	255
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	3 cut(s)	266, 377, 407
MspI	CCGG	6 cut(s)	84, 110, 171, 249, 299, 312
MspR9I	CCNGG	4 cut(s)	110, 249, 250, 378
MvaI	CCWGG	1 cut(s)	378
MvnI	CGCG	1 cut(s)	146
MwoI	GCNNNNNNNGC	3 cut(s)	41, 283, 407
NciI	CCSGG	3 cut(s)	110, 249, 250
NdeII	GATC	1 cut(s)	153
NlaIII	CATG	1 cut(s)	295
NlaIV	GGNNCC	2 cut(s)	253, 254
NmeAIII	GCCGAG	2 cut(s)	103, 286
PcsI	WCGNNNNNNNCGW	2 cut(s)	54, 75
PkrI	GCNGC	1 cut(s)	76
PleI	GAGTC	1 cut(s)	289
PmaCI	CACGTG	1 cut(s)	163
PmlI	CACGTG	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	289
Ppu21I	YACGTR	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	376
PspCI	CACGTG	1 cut(s)	163
PspFI	CCCAGC	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	2 cut(s)	253, 254
PspOMI	GGGCCC	1 cut(s)	251
PspPI	GGNCC	2 cut(s)	251, 252
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	1 cut(s)	153
Sau96I	GGNCC	2 cut(s)	251, 252
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	4 cut(s)	110, 249, 250, 378
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	3 cut(s)	165, 355, 406
SfaNI	GCATC	1 cut(s)	180
SmaI	CCCGGG	1 cut(s)	250
SrfI	GCCCGGGC	1 cut(s)	250
SsiI	CCGC	1 cut(s)	74
StyD4I	CCNGG	4 cut(s)	108, 247, 248, 376
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	3 cut(s)	6, 207, 355
TauI	GCSGC	1 cut(s)	77
TspMI	CCCGGG	1 cut(s)	248
XmaI	CCCGGG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.