Rmu_sc0007432.1_g000004

Galactose oxidase, central domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007432.1
N/A
Physical Location & Seq
Forward (+)
30521 .. 33152
2632 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 642 bp
atgcagctgttgctatttggaggccatggaactggtggctggttgagtcgttatgacatctattacaatgactgcatcatcttagacagggtttctgcacagtggaagcggttacctactggcaatgaaccccctcctgctcgagcataccattcactgacatgcattggctcacgttatctgttatttggtggttttgatggcaaatccacatttggtgatctatggtggttggttcctgaagaggaccctattgcaaacaggcttcgtgcaacttcaccaaccaatattaccgaaaataaggatgtcatgatggaaaataataatgtccaatctgaactcaaggaaagcgaaacagaagaatctgctgtctcagaattgcgaaaaagattaggaatatcagtttctctcgctagtaatggggttcctgttgtggatgagttagaagacagagaacttattgaactagcttcaagtttggttggagaaagagatgctactcaaaagtacaaaattacttataatgtatctcaggcacttcgtgaccactggaggaattgtactgcaaggttcataccacttaaagagcttgggcctttgcttcgggactaccaacgccaaattactcgtcgtcacctgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Kelch_3 Kelch_4

Protein Analysis

213

Amino Acids

24.3

Weight (kDa)

5.87

Isoelectric Point (pI)

54.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_KLHDC2_KLHL20_DRC7 PF24681 2 - 81 1.4e-13 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42 PF13415 2 - 79 2.3e-09 FBX42, beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 522
AciI CCGC 1 cut(s) 109
AcuI CTGAAG 1 cut(s) 261
AdeI CACNNNGTG 1 cut(s) 542
AfaI GTAC 2 cut(s) 509, 562
AgsI TTSAA 2 cut(s) 464, 474
AluBI AGCT 3 cut(s) 7, 470, 589
AluI AGCT 3 cut(s) 7, 470, 589
Alw26I GTCTC 1 cut(s) 376
Ama87I CYCGRG 1 cut(s) 141
AoxI GGCC 2 cut(s) 22, 593
ApeKI GCWGC 1 cut(s) 4
ArsI GACNNNNNNTTYG 1 cut(s) 613
AspS9I GGNCC 2 cut(s) 247, 593
AsuHPI GGTGA 3 cut(s) 230, 270, 626
AvaI CYCGRG 1 cut(s) 141
AvaII GGWCC 1 cut(s) 247
BbsI GAAGAC 1 cut(s) 453
BbvI GCAGC 1 cut(s) 16
BccI CCATC 2 cut(s) 194, 307
BcoDI GTCTC 1 cut(s) 376
BfaI CTAG 2 cut(s) 414, 467
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme18I GGWCC 1 cut(s) 247
BmeT110I CYCGRG 1 cut(s) 141
BmgT120I GGNCC 2 cut(s) 247, 593
BmiI GGNNCC 3 cut(s) 237, 249, 426
BmsI GCATC 2 cut(s) 84, 484
BpiI GAAGAC 1 cut(s) 453
BpmI CTGGAG 1 cut(s) 571
BpuEI CTTGAG 1 cut(s) 326
BsaJI CCNNGG 1 cut(s) 25
BsaXI ACNNNNNCTCC 2 cut(s) 544, 574
Bse1I ACTGG 3 cut(s) 37, 124, 554
Bse3DI GCAATG 1 cut(s) 130
BseDI CCNNGG 1 cut(s) 25
BseGI GGATG 2 cut(s) 310, 442
BseMI GCAATG 1 cut(s) 130
BseMII CTCAG 2 cut(s) 387, 545
BseNI ACTGG 3 cut(s) 37, 124, 554
BseXI GCAGC 1 cut(s) 16
BsgI GTGCAG 1 cut(s) 81
BshFI GGCC 2 cut(s) 24, 595
BsiHKCI CYCGRG 1 cut(s) 141
BslFI GGGAC 1 cut(s) 620
BsmAI GTCTC 1 cut(s) 376
BsmFI GGGAC 1 cut(s) 620
BsnI GGCC 2 cut(s) 24, 595
BsoBI CYCGRG 1 cut(s) 141
Bsp143I GATC 1 cut(s) 220
Bsp19I CCATGG 1 cut(s) 25
BspACI CCGC 1 cut(s) 109
BspANI GGCC 2 cut(s) 24, 595
BspCNI CTCAG 2 cut(s) 386, 544
BspHI TCATGA 1 cut(s) 309
BspLI GGNNCC 3 cut(s) 237, 249, 426
BsrDI GCAATG 1 cut(s) 130
BsrI ACTGG 3 cut(s) 37, 124, 554
BssECI CCNNGG 1 cut(s) 25
BssMI GATC 1 cut(s) 220
BssT1I CCWWGG 1 cut(s) 25
Bst4CI ACNGT 1 cut(s) 102
Bst6I CTCTTC 1 cut(s) 237
BstAPI GCANNNNNTGC 1 cut(s) 10
BstDEI CTNAG 3 cut(s) 82, 373, 531
BstDSI CCRYGG 1 cut(s) 25
BstEII GGTNACC 1 cut(s) 111
BstF5I GGATG 2 cut(s) 310, 442
BstKTI GATC 1 cut(s) 223
BstMAI GTCTC 1 cut(s) 376
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNSI RCATGY 1 cut(s) 165
BstPI GGTNACC 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 453
BstXI CCANNNNNNTGG 1 cut(s) 32
BsuRI GGCC 2 cut(s) 24, 595
BtgI CCRYGG 1 cut(s) 25
BtsCI GGATG 2 cut(s) 310, 442
BtsIMutI CAGTG 3 cut(s) 107, 155, 547
CciI TCATGA 1 cut(s) 309
Cfr13I GGNCC 2 cut(s) 247, 593
Csp6I GTAC 2 cut(s) 508, 561
CviAII CATG 3 cut(s) 26, 162, 310
CviJI RGCY 8 cut(s) 7, 24, 39, 171, 265, 470, 589, 595
CviKI_1 RGCY 8 cut(s) 7, 24, 39, 171, 265, 470, 589, 595
CviQI GTAC 2 cut(s) 508, 561
DdeI CTNAG 3 cut(s) 82, 373, 531
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
DraIII CACNNNGTG 1 cut(s) 542
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 25
Eco47I GGWCC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 261
Eco88I CYCGRG 1 cut(s) 141
Eco91I GGTNACC 1 cut(s) 111
EcoO109I RGGNCCY 1 cut(s) 247
EcoO65I GGTNACC 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 25
EcoT22I ATGCAT 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 25
FaeI CATG 3 cut(s) 29, 165, 313
FaiI YATR 8 cut(s) 27, 54, 148, 163, 226, 311, 522, 575
FaqI GGGAC 1 cut(s) 620
FatI CATG 3 cut(s) 25, 161, 309
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 2 cut(s) 317, 449
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 2 cut(s) 414, 467
GluI GCNGC 1 cut(s) 5
GsuI CTGGAG 1 cut(s) 571
HaeIII GGCC 2 cut(s) 24, 595
Hin1II CATG 3 cut(s) 29, 165, 313
HinfI GANTC 2 cut(s) 46, 362
HphI GGTGA 3 cut(s) 230, 270, 626
Hpy188I TCNGA 2 cut(s) 337, 376
Hpy188III TCNNGA 4 cut(s) 239, 310, 542, 605
Hpy99I CGWCG 1 cut(s) 633
HpyCH4III ACNGT 1 cut(s) 102
HpyCH4IV ACGT 1 cut(s) 175
HpyCH4V TGCA 7 cut(s) 4, 75, 98, 165, 257, 272, 566
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 3 cut(s) 82, 373, 531
HpySE526I ACGT 1 cut(s) 175
Hsp92II CATG 3 cut(s) 29, 165, 313
Kzo9I GATC 1 cut(s) 220
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 2 cut(s) 84, 484
MaeI CTAG 2 cut(s) 414, 467
MaeII ACGT 1 cut(s) 175
MaeIII GTNAC 3 cut(s) 111, 542, 632
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 3 cut(s) 254, 371, 458
MluCI AATT 4 cut(s) 377, 513, 556, 621
MlyI GAGTC 1 cut(s) 55
MmeI TCCRAC 1 cut(s) 463
MnlI CCTC 4 cut(s) 14, 144, 238, 546
Mph1103I ATGCAT 1 cut(s) 167
MseI TTAA 1 cut(s) 582
MslI CAYNNNNRTG 1 cut(s) 160
MspA1I CMGCKG 1 cut(s) 7
MwoI GCNNNNNNNGC 1 cut(s) 10
NcoI CCATGG 1 cut(s) 25
NdeII GATC 1 cut(s) 220
NlaIII CATG 3 cut(s) 29, 165, 313
NlaIV GGNNCC 3 cut(s) 237, 249, 426
NmuCI GTSAC 2 cut(s) 542, 632
NsiI ATGCAT 1 cut(s) 167
NspI RCATGY 1 cut(s) 165
PaeR7I CTCGAG 1 cut(s) 141
PagI TCATGA 1 cut(s) 309
PfeI GAWTC 1 cut(s) 362
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 54
PpuMI RGGWCCY 1 cut(s) 247
PsiI TTATAA 1 cut(s) 522
Psp5II RGGWCCY 1 cut(s) 247
PspEI GGTNACC 1 cut(s) 111
PspN4I GGNNCC 3 cut(s) 237, 249, 426
PspPI GGNCC 2 cut(s) 247, 593
PspPPI RGGWCCY 1 cut(s) 247
PspXI VCTCGAGB 1 cut(s) 141
PvuII CAGCTG 1 cut(s) 7
RsaI GTAC 2 cut(s) 509, 562
RsaNI GTAC 2 cut(s) 508, 561
RseI CAYNNNNRTG 1 cut(s) 160
SaqAI TTAA 1 cut(s) 582
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 1 cut(s) 220
Sau96I GGNCC 2 cut(s) 247, 593
SchI GAGTC 1 cut(s) 55
SetI ASST 7 cut(s) 9, 118, 178, 472, 572, 591, 639
SfaNI GCATC 2 cut(s) 84, 484
Sfr274I CTCGAG 1 cut(s) 141
SinI GGWCC 1 cut(s) 247
SlaI CTCGAG 1 cut(s) 141
SmiMI CAYNNNNRTG 1 cut(s) 160
SmlI CTYRAG 2 cut(s) 141, 341
SmoI CTYRAG 2 cut(s) 141, 341
Sse9I AATT 4 cut(s) 377, 513, 556, 621
SsiI CCGC 1 cut(s) 109
SspI AATATT 1 cut(s) 289
SspMI CTAG 2 cut(s) 414, 467
StyI CCWWGG 1 cut(s) 25
TaaI ACNGT 1 cut(s) 102
TaiI ACGT 1 cut(s) 178
TaqI TCGA 1 cut(s) 142
TasI AATT 4 cut(s) 377, 513, 556, 621
TatI WGTACW 2 cut(s) 507, 560
TfiI GAWTC 1 cut(s) 362
Tru1I TTAA 1 cut(s) 582
Tru9I TTAA 1 cut(s) 582
TscAI CASTG 3 cut(s) 107, 162, 554
TseFI GTSAC 2 cut(s) 542, 632
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 2 cut(s) 542, 632
TspDTI ATGAA 2 cut(s) 141, 562
TspRI CASTG 3 cut(s) 107, 162, 554
VpaK11BI GGWCC 1 cut(s) 247
XceI RCATGY 1 cut(s) 165
XcmI CCANNNNNNNNNTGG 1 cut(s) 32
XhoI CTCGAG 1 cut(s) 141
XspI CTAG 2 cut(s) 414, 467
Zsp2I ATGCAT 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.