Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007456.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

20687 .. 21357

Gene Structure 671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atgtgtccctgggaggaaaaatctgcggctgtccaattatccaataagatatgcaagtccaagaggaataaacagtggaggaaaagaaagaggaagcgcattgcggagatgtttgcaaaggaacgtgaagggtttgatgaagctgatgaatggagagctagggaaattgcaaaggaaattgccaatcgcaagatggaagacatgaagaaaattgcaagccttaaagcaaaggaagagagaaagagaccagaatccgagccggataccaggacactgggtgcaacctccacctcctgcagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0008150 GO:0009719 GO:0009725 GO:0009966 GO:0009967 GO:0010033 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0014070 GO:0023051 GO:0023056 GO:0031960 GO:0032991 GO:0033993 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051384 GO:0065007 GO:0070228 GO:0070230 GO:0070232 GO:0070234 GO:1990904 GO:2000106 GO:2000108 GO:2001233 GO:2001235

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDCD7

Protein Analysis

100

Amino Acids

11.86

Weight (kDa)

9.92

Isoelectric Point (pI)

57.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	26, 104
AdeI	CACNNNGTG	1 cut(s)	278
AjnI	CCWGG	2 cut(s)	8, 266
AluBI	AGCT	2 cut(s)	143, 158
AluI	AGCT	2 cut(s)	143, 158
Alw26I	GTCTC	1 cut(s)	238
AspLEI	GCGC	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	204
BccI	CCATC	1 cut(s)	187
BciT130I	CCWGG	2 cut(s)	10, 268
BciVI	GTATCC	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	238
BfaI	CTAG	1 cut(s)	159
BfmI	CTRYAG	1 cut(s)	295
BfuI	GTATCC	1 cut(s)	256
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
Bme1390I	CCNGG	2 cut(s)	10, 268
BmrFI	CCNGG	2 cut(s)	10, 268
BmrI	ACTGGG	1 cut(s)	284
BmuI	ACTGGG	1 cut(s)	284
BpiI	GAAGAC	1 cut(s)	204
BsaI	GGTCTC	1 cut(s)	238
BsaJI	CCNNGG	2 cut(s)	8, 9
Bse1I	ACTGG	1 cut(s)	279
Bse3DI	GCAATG	1 cut(s)	99
BseBI	CCWGG	2 cut(s)	10, 268
BseDI	CCNNGG	2 cut(s)	8, 9
BseMI	GCAATG	1 cut(s)	99
BseNI	ACTGG	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	260
BsmAI	GTCTC	1 cut(s)	238
Bso31I	GGTCTC	1 cut(s)	238
BspACI	CCGC	2 cut(s)	26, 104
BspMAI	CTGCAG	1 cut(s)	299
BspTNI	GGTCTC	1 cut(s)	238
BsrDI	GCAATG	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	279
BssECI	CCNNGG	2 cut(s)	8, 9
Bst2UI	CCWGG	2 cut(s)	10, 268
Bst4CI	ACNGT	1 cut(s)	75
Bst6I	CTCTTC	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	217
BstHHI	GCGC	1 cut(s)	99
BstMAI	GTCTC	1 cut(s)	238
BstNI	CCWGG	2 cut(s)	10, 268
BstSCI	CCNGG	2 cut(s)	8, 266
BstSFI	CTRYAG	1 cut(s)	295
BstV2I	GAAGAC	1 cut(s)	204
BstXI	CCANNNNNNTGG	1 cut(s)	274
BsuI	GTATCC	1 cut(s)	256
BtsIMutI	CAGTG	2 cut(s)	80, 272
Cac8I	GCNNGC	1 cut(s)	217
CfoI	GCGC	1 cut(s)	99
CviAII	CATG	1 cut(s)	202
CviJI	RGCY	5 cut(s)	29, 143, 158, 219, 259
CviKI_1	RGCY	5 cut(s)	29, 143, 158, 219, 259
DraIII	CACNNNGTG	1 cut(s)	278
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	238
EcoRII	CCWGG	2 cut(s)	8, 266
FaeI	CATG	1 cut(s)	205
FaiI	YATR	2 cut(s)	52, 203
FatI	CATG	1 cut(s)	201
Fnu4HI	GCNGC	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	27
FspBI	CTAG	1 cut(s)	159
GlaI	GCGC	1 cut(s)	98
GluI	GCNGC	1 cut(s)	27
HapII	CCGG	1 cut(s)	260
HhaI	GCGC	1 cut(s)	99
Hin1II	CATG	1 cut(s)	205
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HinfI	GANTC	1 cut(s)	251
HpaII	CCGG	1 cut(s)	260
Hpy188I	TCNGA	1 cut(s)	256
HpyAV	CCTTC	1 cut(s)	122
HpyCH4III	ACNGT	1 cut(s)	75
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	6 cut(s)	54, 116, 170, 215, 281, 297
HpySE526I	ACGT	1 cut(s)	124
Hsp92II	CATG	1 cut(s)	205
HspAI	GCGC	1 cut(s)	97
LpnPI	CCDG	6 cut(s)	22, 253, 260, 261, 273, 280
MaeI	CTAG	1 cut(s)	159
MaeII	ACGT	1 cut(s)	124
MboII	GAAGA	3 cut(s)	209, 217, 245
MluCI	AATT	4 cut(s)	35, 165, 177, 210
MnlI	CCTC	6 cut(s)	7, 57, 72, 84, 295, 301
MseI	TTAA	1 cut(s)	222
MspI	CCGG	1 cut(s)	260
MspR9I	CCNGG	2 cut(s)	10, 268
MvaI	CCWGG	2 cut(s)	10, 268
NlaIII	CATG	1 cut(s)	205
PasI	CCCWGGG	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	251
PkrI	GCNGC	1 cut(s)	28
Psp6I	CCWGG	2 cut(s)	8, 266
PspGI	CCWGG	2 cut(s)	8, 266
PstI	CTGCAG	1 cut(s)	299
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	1 cut(s)	27
ScrFI	CCNGG	2 cut(s)	10, 268
SetI	ASST	5 cut(s)	127, 145, 160, 287, 293
SfcI	CTRYAG	1 cut(s)	295
Sse9I	AATT	4 cut(s)	35, 165, 177, 210
SsiI	CCGC	2 cut(s)	26, 104
SspMI	CTAG	1 cut(s)	159
StyD4I	CCNGG	2 cut(s)	8, 266
TaaI	ACNGT	1 cut(s)	75
TaiI	ACGT	1 cut(s)	127
TasI	AATT	4 cut(s)	35, 165, 177, 210
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	2 cut(s)	80, 279
TspDTI	ATGAA	3 cut(s)	153, 162, 218
TspRI	CASTG	2 cut(s)	80, 279
XcmI	CCANNNNNNNNNTGG	1 cut(s)	190
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.