Rmu_sc0007457.1_g000015

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007457.1
N/A
Physical Location & Seq
Reverse (-)
86917 .. 91788
4872 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 720 bp
ctgagagaggctttctccttcacaaagccgatctacccaggcgcttctcctctggctgcttccgccatctccaccatctccaagacctctctctctcggcgcttactcgatctgggcaggactagagtcttccacccgatctccgattctcaccgatccgccgcttctgagctcttcacccagggatccttcgacagcaacccgattcggatcgagacctcttggagattgggaggagctccaggtggtagcggggtagtaatgtcgactcctgcaaggaagaggctgatgagggacttcaagagactgcaacaggacccacctgcagggattagtggggctccccaagacaacaatataatgctgtggaatgccgttatatttggtcctgatgataccccttgggatggaggcacgtttaagttaactcttcagttcacagaagattatccaaacaaaccaccaacggtgcgatttgtttctcgaatgtttcatccaaatatttatgccgatggaagtatttgtttagatattttgcaaaatcagtggagtcctatttatgatgtggcagctatactcacatctatccagtcactactatgtgatccgaacccaaattctcctgcaaattcagaagctgctcgcatgttcagcgagaacaagcgagagtacaaccgaagagttagggaaatcgtggaacagagttggacagcagactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
UQ_con

Protein Analysis

239

Amino Acids

26.59

Weight (kDa)

8.62

Isoelectric Point (pI)

63.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 95 - 231 2.5e-53 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 331
Acc36I ACCTGC 1 cut(s) 331
AccI GTMKAC 1 cut(s) 266
AciI CCGC 4 cut(s) 63, 159, 162, 252
AclWI GGATC 5 cut(s) 150, 180, 193, 218, 599
AcsI RAATTY 2 cut(s) 616, 628
AcuI CTGAAG 1 cut(s) 416
AfaI GTAC 1 cut(s) 671
AfiI CCNNNNNNNGG 2 cut(s) 326, 407
AgsI TTSAA 1 cut(s) 301
AjnI CCWGG 3 cut(s) 37, 180, 241
AluBI AGCT 4 cut(s) 172, 239, 572, 638
AluI AGCT 4 cut(s) 172, 239, 572, 638
Alw21I GWGCWC 2 cut(s) 174, 241
Alw26I GTCTC 2 cut(s) 209, 298
AlwI GGATC 5 cut(s) 150, 180, 193, 218, 599
AlwNI CAGNNNCTG 1 cut(s) 638
ApeKI GCWGC 3 cut(s) 56, 569, 638
ApoI RAATTY 2 cut(s) 616, 628
AspLEI GCGC 2 cut(s) 44, 102
AspS9I GGNCC 2 cut(s) 316, 386
AsuHPI GGTGA 2 cut(s) 143, 169
AvaII GGWCC 2 cut(s) 316, 386
BamHI GGATCC 1 cut(s) 185
BanII GRGCYC 3 cut(s) 174, 241, 343
BbsI GAAGAC 1 cut(s) 121
Bbv12I GWGCWC 2 cut(s) 174, 241
BbvI GCAGC 3 cut(s) 43, 581, 625
BccI CCATC 4 cut(s) 74, 83, 401, 506
BceAI ACGGC 1 cut(s) 359
BciT130I CCWGG 3 cut(s) 39, 182, 243
BcoDI GTCTC 2 cut(s) 209, 298
BfaI CTAG 1 cut(s) 123
BfmI CTRYAG 1 cut(s) 324
BfoI RGCGCY 2 cut(s) 45, 103
BfuAI ACCTGC 1 cut(s) 331
BisI GCNGC 4 cut(s) 57, 162, 570, 639
BlsI GCNGC 4 cut(s) 58, 163, 571, 640
Bme1390I CCNGG 3 cut(s) 39, 182, 243
Bme18I GGWCC 2 cut(s) 316, 386
BmgT120I GGNCC 2 cut(s) 316, 386
BmiI GGNNCC 3 cut(s) 187, 318, 342
BmrFI CCNGG 3 cut(s) 39, 182, 243
BoxI GACNNNNGTC 1 cut(s) 125
BpiI GAAGAC 1 cut(s) 121
BplI GAGNNNNNCTC 1 cut(s) 31
BpmI CTGGAG 1 cut(s) 225
BsaBI GATNNNNATC 1 cut(s) 209
BsaI GGTCTC 1 cut(s) 209
BsaJI CCNNGG 4 cut(s) 37, 180, 181, 401
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 2 cut(s) 326, 407
Bse1I ACTGG 1 cut(s) 589
Bse8I GATNNNNATC 1 cut(s) 209
BseBI CCWGG 3 cut(s) 39, 182, 243
BseDI CCNNGG 4 cut(s) 37, 180, 181, 401
BseGI GGATG 2 cut(s) 412, 493
BseJI GATNNNNATC 1 cut(s) 209
BseLI CCNNNNNNNGG 2 cut(s) 326, 407
BseMII CTCAG 1 cut(s) 159
BseNI ACTGG 1 cut(s) 589
BseRI GAGGAG 2 cut(s) 39, 249
BseXI GCAGC 3 cut(s) 43, 581, 625
BsiHKAI GWGCWC 2 cut(s) 174, 241
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 2 cut(s) 326, 407
BsmAI GTCTC 2 cut(s) 209, 298
BsmFI GGGAC 1 cut(s) 308
BsmI GAATGC 1 cut(s) 376
Bso31I GGTCTC 1 cut(s) 209
Bsp1286I GDGCHC 3 cut(s) 174, 241, 343
Bsp143I GATC 7 cut(s) 30, 109, 138, 155, 185, 210, 604
BspACI CCGC 4 cut(s) 63, 159, 162, 252
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 3 cut(s) 187, 318, 342
BspMAI CTGCAG 1 cut(s) 328
BspMI ACCTGC 1 cut(s) 331
BspPI GGATC 5 cut(s) 150, 180, 193, 218, 599
BspQI GCTCTTC 1 cut(s) 179
BspTNI GGTCTC 1 cut(s) 209
BsrI ACTGG 1 cut(s) 589
BssECI CCNNGG 4 cut(s) 37, 180, 181, 401
BssMI GATC 7 cut(s) 30, 109, 138, 155, 185, 210, 604
BssT1I CCWWGG 1 cut(s) 401
Bst2UI CCWGG 3 cut(s) 39, 182, 243
Bst4CI ACNGT 1 cut(s) 469
Bst6I CTCTTC 4 cut(s) 179, 275, 435, 673
BstC8I GCNNGC 1 cut(s) 643
BstDEI CTNAG 2 cut(s) 2, 168
BstF5I GGATG 2 cut(s) 412, 493
BstH2I RGCGCY 2 cut(s) 45, 103
BstHHI GCGC 2 cut(s) 44, 102
BstKTI GATC 7 cut(s) 33, 112, 141, 158, 188, 213, 607
BstMAI GTCTC 2 cut(s) 209, 298
BstMBI GATC 7 cut(s) 30, 109, 138, 155, 185, 210, 604
BstMWI GCNNNNNNNGC 2 cut(s) 62, 651
BstNI CCWGG 3 cut(s) 39, 182, 243
BstNSI RCATGY 1 cut(s) 649
BstPAI GACNNNNGTC 1 cut(s) 125
BstSCI CCNGG 3 cut(s) 37, 180, 241
BstSFI CTRYAG 1 cut(s) 324
BstV1I GCAGC 3 cut(s) 43, 581, 625
BstV2I GAAGAC 1 cut(s) 121
BstX2I RGATCY 1 cut(s) 185
BstYI RGATCY 1 cut(s) 185
BtsCI GGATG 2 cut(s) 412, 493
BtsIMutI CAGTG 1 cut(s) 551
BveI ACCTGC 1 cut(s) 331
Cac8I GCNNGC 1 cut(s) 643
CaiI CAGNNNCTG 1 cut(s) 638
CfoI GCGC 2 cut(s) 44, 102
Cfr13I GGNCC 2 cut(s) 316, 386
Csp6I GTAC 1 cut(s) 670
CspCI CAANNNNNGTGG 2 cut(s) 527, 562
CviAII CATG 1 cut(s) 646
CviJI RGCY 9 cut(s) 11, 28, 56, 172, 239, 286, 341, 572, 638
CviKI_1 RGCY 9 cut(s) 11, 28, 56, 172, 239, 286, 341, 572, 638
CviQI GTAC 1 cut(s) 670
DdeI CTNAG 2 cut(s) 2, 168
DpnI GATC 7 cut(s) 32, 111, 140, 157, 187, 212, 606
DpnII GATC 7 cut(s) 30, 109, 138, 155, 185, 210, 604
Eam1104I CTCTTC 4 cut(s) 179, 275, 435, 673
EarI CTCTTC 4 cut(s) 179, 275, 435, 673
EciI GGCGGA 2 cut(s) 52, 148
Ecl136II GAGCTC 2 cut(s) 172, 239
Eco130I CCWWGG 1 cut(s) 401
Eco24I GRGCYC 3 cut(s) 174, 241, 343
Eco31I GGTCTC 1 cut(s) 209
Eco47I GGWCC 2 cut(s) 316, 386
Eco53kI GAGCTC 2 cut(s) 172, 239
Eco57I CTGAAG 1 cut(s) 416
EcoICRI GAGCTC 2 cut(s) 172, 239
EcoO109I RGGNCCY 1 cut(s) 316
EcoRII CCWGG 3 cut(s) 37, 180, 241
EcoT14I CCWWGG 1 cut(s) 401
EcoT38I GRGCYC 3 cut(s) 174, 241, 343
ErhI CCWWGG 1 cut(s) 401
FaeI CATG 1 cut(s) 649
FaiI YATR 7 cut(s) 359, 380, 507, 561, 575, 601, 647
FaqI GGGAC 1 cut(s) 308
FatI CATG 1 cut(s) 645
FauI CCCGC 1 cut(s) 245
FblI GTMKAC 1 cut(s) 266
Fnu4HI GCNGC 4 cut(s) 57, 162, 570, 639
FokI GGATG 2 cut(s) 419, 480
FriOI GRGCYC 3 cut(s) 174, 241, 343
Fsp4HI GCNGC 4 cut(s) 57, 162, 570, 639
FspBI CTAG 1 cut(s) 123
GlaI GCGC 2 cut(s) 43, 101
GluI GCNGC 4 cut(s) 57, 162, 570, 639
GsuI CTGGAG 1 cut(s) 225
HaeII RGCGCY 2 cut(s) 45, 103
HhaI GCGC 2 cut(s) 44, 102
Hin1II CATG 1 cut(s) 649
Hin6I GCGC 2 cut(s) 42, 100
HinP1I GCGC 2 cut(s) 42, 100
HincII GTYRAC 2 cut(s) 267, 426
HindII GTYRAC 2 cut(s) 267, 426
HinfI GANTC 5 cut(s) 126, 146, 205, 268, 550
HpaI GTTAAC 1 cut(s) 426
HphI GGTGA 2 cut(s) 143, 169
Hpy166II GTNNAC 3 cut(s) 267, 426, 438
Hpy188I TCNGA 5 cut(s) 145, 169, 210, 609, 634
Hpy188III TCNNGA 4 cut(s) 214, 301, 389, 483
Hpy8I GTNNAC 3 cut(s) 267, 426, 438
HpyAV CCTTC 2 cut(s) 28, 199
HpyCH4III ACNGT 1 cut(s) 469
HpyCH4IV ACGT 1 cut(s) 416
HpyCH4V TGCA 5 cut(s) 275, 310, 326, 538, 626
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 651
HpyF3I CTNAG 2 cut(s) 2, 168
HpySE526I ACGT 1 cut(s) 416
Hsp92II CATG 1 cut(s) 649
HspAI GCGC 2 cut(s) 42, 100
KspAI GTTAAC 1 cut(s) 426
Kzo9I GATC 7 cut(s) 30, 109, 138, 155, 185, 210, 604
LguI GCTCTTC 1 cut(s) 179
LmnI GCTCC 3 cut(s) 236, 244, 346
Lsp1109I GCAGC 3 cut(s) 43, 581, 625
MaeI CTAG 1 cut(s) 123
MaeII ACGT 1 cut(s) 416
MaeIII GTNAC 1 cut(s) 591
MalI GATC 7 cut(s) 32, 111, 140, 157, 187, 212, 606
MboI GATC 7 cut(s) 30, 109, 138, 155, 185, 210, 604
MboII GAAGA 6 cut(s) 121, 166, 292, 422, 455, 690
MflI RGATCY 1 cut(s) 185
MhlI GDGCHC 3 cut(s) 174, 241, 343
MluCI AATT 2 cut(s) 616, 628
MlyI GAGTC 3 cut(s) 135, 262, 559
MmeI TCCRAC 1 cut(s) 686
MnlI CCTC 7 cut(s) 60, 97, 227, 229, 276, 285, 404
MseI TTAA 2 cut(s) 420, 425
MslI CAYNNNNRTG 1 cut(s) 598
MspR9I CCNGG 3 cut(s) 39, 182, 243
Mva1269I GAATGC 1 cut(s) 376
MvaI CCWGG 3 cut(s) 39, 182, 243
MwoI GCNNNNNNNGC 2 cut(s) 62, 651
NdeII GATC 7 cut(s) 30, 109, 138, 155, 185, 210, 604
NlaIII CATG 1 cut(s) 649
NlaIV GGNNCC 3 cut(s) 187, 318, 342
NmeAIII GCCGAG 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 591
NspI RCATGY 1 cut(s) 649
PaqCI CACCTGC 1 cut(s) 331
PasI CCCWGGG 1 cut(s) 181
PciSI GCTCTTC 1 cut(s) 179
PctI GAATGC 1 cut(s) 376
PfeI GAWTC 2 cut(s) 146, 205
PkrI GCNGC 4 cut(s) 58, 163, 571, 640
PleI GAGTC 3 cut(s) 134, 262, 558
PpsI GAGTC 3 cut(s) 134, 262, 558
PpuMI RGGWCCY 1 cut(s) 316
PshAI GACNNNNGTC 1 cut(s) 125
Psp124BI GAGCTC 2 cut(s) 174, 241
Psp5II RGGWCCY 1 cut(s) 316
Psp6I CCWGG 3 cut(s) 37, 180, 241
PspGI CCWGG 3 cut(s) 37, 180, 241
PspN4I GGNNCC 3 cut(s) 187, 318, 342
PspPI GGNCC 2 cut(s) 316, 386
PspPPI RGGWCCY 1 cut(s) 316
PstI CTGCAG 1 cut(s) 328
PstNI CAGNNNCTG 1 cut(s) 638
PsuI RGATCY 1 cut(s) 185
RsaI GTAC 1 cut(s) 671
RsaNI GTAC 1 cut(s) 670
RseI CAYNNNNRTG 1 cut(s) 598
SacI GAGCTC 2 cut(s) 174, 241
SalI GTCGAC 1 cut(s) 265
SapI GCTCTTC 1 cut(s) 179
SaqAI TTAA 2 cut(s) 420, 425
SatI GCNGC 4 cut(s) 57, 162, 570, 639
Sau3AI GATC 7 cut(s) 30, 109, 138, 155, 185, 210, 604
Sau96I GGNCC 2 cut(s) 316, 386
SbfI CCTGCAGG 1 cut(s) 328
SchI GAGTC 3 cut(s) 135, 262, 559
ScrFI CCNGG 3 cut(s) 39, 182, 243
SdaI CCTGCAGG 1 cut(s) 328
SduI GDGCHC 3 cut(s) 174, 241, 343
SetI ASST 9 cut(s) 89, 174, 221, 241, 247, 325, 419, 574, 640
SfcI CTRYAG 1 cut(s) 324
SinI GGWCC 2 cut(s) 316, 386
SmiMI CAYNNNNRTG 1 cut(s) 598
Sse8387I CCTGCAGG 1 cut(s) 328
Sse9I AATT 2 cut(s) 616, 628
SsiI CCGC 4 cut(s) 63, 159, 162, 252
SspI AATATT 1 cut(s) 502
SspMI CTAG 1 cut(s) 123
SstI GAGCTC 2 cut(s) 174, 241
StyD4I CCNGG 3 cut(s) 37, 180, 241
StyI CCWWGG 1 cut(s) 401
TaaI ACNGT 1 cut(s) 469
TaiI ACGT 1 cut(s) 419
TaqI TCGA 5 cut(s) 108, 192, 213, 266, 484
TasI AATT 2 cut(s) 616, 628
TatI WGTACW 1 cut(s) 669
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 2 cut(s) 146, 205
Tru1I TTAA 2 cut(s) 420, 425
Tru9I TTAA 2 cut(s) 420, 425
TscAI CASTG 1 cut(s) 551
TseFI GTSAC 1 cut(s) 591
TseI GCWGC 3 cut(s) 56, 569, 638
Tsp45I GTSAC 1 cut(s) 591
TspDTI ATGAA 1 cut(s) 482
TspRI CASTG 1 cut(s) 551
VpaK11BI GGWCC 2 cut(s) 316, 386
XapI RAATTY 2 cut(s) 616, 628
XceI RCATGY 1 cut(s) 649
XmiI GTMKAC 1 cut(s) 266
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.