Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007463.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

46817 .. 52145

Gene Structure 5329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

atgtgtgacgtcttgagtattaaatttgcagctattggagaaacgctaacttttgctgctccagaaggactaactttccttacaaacggagaatggattcgctacctcctcattgcaaggatgttacgattgattaggctcctgatgcatgtccagcgttgccgagcctttatcgccacattcttaactcttataccaagtttgatgccataccttgggaccatattttgtgtcatgaacatctattgtacgcttggtgtacagatcttcggcgggattgttaatgctggaaatgccaatttggaagcaacagatctttatgacaacgactatctacttttcaacttcaatgactatccaaatgggatggtgacacttttcaatttactagtcacgggaaactggcaagattggatgcagagttacaaggttttaacaggaacttcttggagccttctatattttgtcagtttctatcttataaccgtcttacttctactgaatttggttgtggcttttgtcctggaggctttctttgctgaaatggatctcgagtctgcagaaatttgtgaaaaacatgaggaggtggaacgagtaaaaggccgacatcgacccgtagggtcaaaatcacggagccagagagttgatactcttcttcatcatatgttgagtgcagagctaaatgaaacgcagtcctccagtgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001508 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005245 GO:0005261 GO:0005262 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008324 GO:0009791 GO:0009845 GO:0009889 GO:0009987 GO:0010119 GO:0010565 GO:0010817 GO:0012505 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019216 GO:0019217 GO:0019222 GO:0019722 GO:0019932 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031090 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0034220 GO:0035556 GO:0042304 GO:0042391 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046885 GO:0046890 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0051899 GO:0055085 GO:0062012 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0080090 GO:0080140 GO:0080141 GO:0086010 GO:0090351 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_7 Ion_trans

Protein Analysis

235

Amino Acids

26.7

Weight (kDa)

5.35

Isoelectric Point (pI)

30.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	25 - 179	1.6e-25	Ion transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	482
AatII	GACGTC	1 cut(s)	12
AccB7I	CCANNNNNTGG	1 cut(s)	215
AciI	CCGC	1 cut(s)	273
AclWI	GGATC	1 cut(s)	555
AcsI	RAATTY	3 cut(s)	23, 502, 564
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	2 cut(s)	250, 261
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	3 cut(s)	343, 349, 382
AhlI	ACTAGT	1 cut(s)	388
AjnI	CCWGG	1 cut(s)	522
AluBI	AGCT	2 cut(s)	32, 679
AluI	AGCT	2 cut(s)	32, 679
AlwI	GGATC	1 cut(s)	555
Ama87I	CYCGRG	1 cut(s)	551
AoxI	GGCC	1 cut(s)	601
ApeKI	GCWGC	2 cut(s)	29, 56
ApoI	RAATTY	3 cut(s)	23, 502, 564
Asp700I	GAANNNNTTC	1 cut(s)	96
AspS9I	GGNCC	1 cut(s)	219
AsuHPI	GGTGA	1 cut(s)	382
AvaI	CYCGRG	1 cut(s)	551
AvaII	GGWCC	1 cut(s)	219
BbvI	GCAGC	2 cut(s)	41, 43
BccI	CCATC	1 cut(s)	361
BciT130I	CCWGG	1 cut(s)	524
BcuI	ACTAGT	1 cut(s)	388
BfaI	CTAG	1 cut(s)	389
BfmI	CTRYAG	1 cut(s)	558
BglII	AGATCT	2 cut(s)	264, 313
BisI	GCNGC	2 cut(s)	30, 57
BlsI	GCNGC	2 cut(s)	31, 58
Bme1390I	CCNGG	1 cut(s)	524
Bme18I	GGWCC	1 cut(s)	219
BmeT110I	CYCGRG	1 cut(s)	551
BmgT120I	GGNCC	1 cut(s)	219
BmiI	GGNNCC	4 cut(s)	140, 220, 452, 635
BmrFI	CCNGG	1 cut(s)	524
BmsI	GCATC	3 cut(s)	135, 195, 405
BpmI	CTGGAG	3 cut(s)	45, 545, 682
BpuEI	CTTGAG	1 cut(s)	34
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse1I	ACTGG	2 cut(s)	407, 699
Bse3DI	GCAATG	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	524
BseDI	CCNNGG	1 cut(s)	214
BseGI	GGATG	3 cut(s)	126, 372, 420
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMI	GCAATG	1 cut(s)	111
BseNI	ACTGG	2 cut(s)	407, 699
BseRI	GAGGAG	2 cut(s)	98, 596
BseXI	GCAGC	2 cut(s)	41, 43
BsgI	GTGCAG	1 cut(s)	693
BshFI	GGCC	1 cut(s)	603
BsiHKCI	CYCGRG	1 cut(s)	551
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	232
BsnI	GGCC	1 cut(s)	603
BsoBI	CYCGRG	1 cut(s)	551
Bsp1407I	TGTACA	1 cut(s)	259
Bsp143I	GATC	3 cut(s)	264, 313, 547
BspACI	CCGC	1 cut(s)	273
BspANI	GGCC	1 cut(s)	603
BspHI	TCATGA	1 cut(s)	234
BspLI	GGNNCC	4 cut(s)	140, 220, 452, 635
BspMAI	CTGCAG	1 cut(s)	562
BspPI	GGATC	1 cut(s)	555
BsrDI	GCAATG	1 cut(s)	111
BsrGI	TGTACA	1 cut(s)	259
BsrI	ACTGG	2 cut(s)	407, 699
BssECI	CCNNGG	1 cut(s)	214
BssMI	GATC	3 cut(s)	264, 313, 547
BssNI	GRCGYC	1 cut(s)	9
BssT1I	CCWWGG	1 cut(s)	214
Bst2UI	CCWGG	1 cut(s)	524
Bst4CI	ACNGT	1 cut(s)	487
Bst6I	CTCTTC	1 cut(s)	657
BstACI	GRCGYC	1 cut(s)	9
BstAUI	TGTACA	1 cut(s)	259
BstF5I	GGATG	3 cut(s)	126, 372, 420
BstKTI	GATC	3 cut(s)	267, 316, 550
BstMBI	GATC	3 cut(s)	264, 313, 547
BstMWI	GCNNNNNNNGC	5 cut(s)	145, 154, 173, 293, 536
BstNI	CCWGG	1 cut(s)	524
BstNSI	RCATGY	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	522
BstSFI	CTRYAG	1 cut(s)	558
BstV1I	GCAGC	2 cut(s)	41, 43
BstX2I	RGATCY	3 cut(s)	264, 313, 547
BstYI	RGATCY	3 cut(s)	264, 313, 547
BsuRI	GGCC	1 cut(s)	603
BtsCI	GGATG	3 cut(s)	126, 372, 420
BtsIMutI	CAGTG	1 cut(s)	706
CciI	TCATGA	1 cut(s)	234
Cfr13I	GGNCC	1 cut(s)	219
Csp6I	GTAC	2 cut(s)	249, 260
CviAII	CATG	3 cut(s)	149, 235, 578
CviJI	RGCY	9 cut(s)	32, 139, 167, 453, 515, 530, 603, 636, 679
CviKI_1	RGCY	9 cut(s)	32, 139, 167, 453, 515, 530, 603, 636, 679
CviQI	GTAC	2 cut(s)	249, 260
DpnI	GATC	3 cut(s)	266, 315, 549
DpnII	GATC	3 cut(s)	264, 313, 547
Eam1104I	CTCTTC	1 cut(s)	657
EarI	CTCTTC	1 cut(s)	657
Eco130I	CCWWGG	1 cut(s)	214
Eco47I	GGWCC	1 cut(s)	219
Eco88I	CYCGRG	1 cut(s)	551
EcoRII	CCWGG	1 cut(s)	522
EcoT14I	CCWWGG	1 cut(s)	214
EcoT22I	ATGCAT	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	214
FaeI	CATG	3 cut(s)	152, 238, 581
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	3 cut(s)	148, 234, 577
FauI	CCCGC	1 cut(s)	266
FauNDI	CATATG	1 cut(s)	663
Fnu4HI	GCNGC	2 cut(s)	30, 57
FokI	GGATG	3 cut(s)	133, 379, 427
Fsp4HI	GCNGC	2 cut(s)	30, 57
FspBI	CTAG	1 cut(s)	389
GluI	GCNGC	2 cut(s)	30, 57
GsuI	CTGGAG	3 cut(s)	45, 545, 682
HaeIII	GGCC	1 cut(s)	603
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	3 cut(s)	152, 238, 581
HinfI	GANTC	2 cut(s)	97, 554
HphI	GGTGA	1 cut(s)	382
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188III	TCNNGA	5 cut(s)	13, 62, 142, 235, 551
Hpy8I	GTNNAC	1 cut(s)	260
HpyAV	CCTTC	2 cut(s)	59, 464
HpyCH4III	ACNGT	1 cut(s)	487
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	7 cut(s)	29, 116, 148, 418, 560, 674, 704
HpyF10VI	GCNNNNNNNGC	5 cut(s)	145, 154, 173, 293, 536
HpySE526I	ACGT	1 cut(s)	9
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	3 cut(s)	152, 238, 581
Kzo9I	GATC	3 cut(s)	264, 313, 547
LmnI	GCTCC	4 cut(s)	64, 144, 450, 633
LpnPI	CCDG	9 cut(s)	75, 155, 167, 273, 388, 423, 509, 536, 650
Lsp1109I	GCAGC	2 cut(s)	41, 43
LweI	GCATC	3 cut(s)	135, 195, 405
MaeI	CTAG	1 cut(s)	389
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	5 cut(s)	5, 123, 370, 391, 422
MalI	GATC	3 cut(s)	266, 315, 549
MboI	GATC	3 cut(s)	264, 313, 547
MboII	GAAGA	3 cut(s)	259, 644, 647
MflI	RGATCY	3 cut(s)	264, 313, 547
MluCI	AATT	5 cut(s)	23, 298, 382, 502, 564
MlyI	GAGTC	1 cut(s)	563
MnlI	CCTC	6 cut(s)	116, 119, 520, 574, 577, 706
Mph1103I	ATGCAT	1 cut(s)	150
MroXI	GAANNNNTTC	1 cut(s)	96
MseI	TTAA	4 cut(s)	21, 185, 282, 434
MspR9I	CCNGG	1 cut(s)	524
MvaI	CCWGG	1 cut(s)	524
MwoI	GCNNNNNNNGC	5 cut(s)	145, 154, 173, 293, 536
NdeI	CATATG	1 cut(s)	663
NdeII	GATC	3 cut(s)	264, 313, 547
NlaIII	CATG	3 cut(s)	152, 238, 581
NlaIV	GGNNCC	4 cut(s)	140, 220, 452, 635
NmeAIII	GCCGAG	1 cut(s)	188
NmuCI	GTSAC	3 cut(s)	5, 370, 391
NsiI	ATGCAT	1 cut(s)	150
NspI	RCATGY	1 cut(s)	152
PaeR7I	CTCGAG	1 cut(s)	551
PagI	TCATGA	1 cut(s)	234
PdmI	GAANNNNTTC	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	97
PflMI	CCANNNNNTGG	1 cut(s)	215
PfoI	TCCNGGA	1 cut(s)	522
PkrI	GCNGC	2 cut(s)	31, 58
PleI	GAGTC	1 cut(s)	562
PpsI	GAGTC	1 cut(s)	562
PsiI	TTATAA	1 cut(s)	482
Psp6I	CCWGG	1 cut(s)	522
PspGI	CCWGG	1 cut(s)	522
PspN4I	GGNNCC	4 cut(s)	140, 220, 452, 635
PspPI	GGNCC	1 cut(s)	219
PstI	CTGCAG	1 cut(s)	562
PsuI	RGATCY	3 cut(s)	264, 313, 547
RsaI	GTAC	2 cut(s)	250, 261
RsaNI	GTAC	2 cut(s)	249, 260
SaqAI	TTAA	4 cut(s)	21, 185, 282, 434
SatI	GCNGC	2 cut(s)	30, 57
Sau3AI	GATC	3 cut(s)	264, 313, 547
Sau96I	GGNCC	1 cut(s)	219
SchI	GAGTC	1 cut(s)	563
ScrFI	CCNGG	1 cut(s)	524
SetI	ASST	7 cut(s)	12, 34, 108, 216, 432, 588, 681
SfaNI	GCATC	3 cut(s)	135, 195, 405
SfcI	CTRYAG	1 cut(s)	558
Sfr274I	CTCGAG	1 cut(s)	551
SinI	GGWCC	1 cut(s)	219
SlaI	CTCGAG	1 cut(s)	551
SmlI	CTYRAG	2 cut(s)	13, 551
SmoI	CTYRAG	2 cut(s)	13, 551
SpeI	ACTAGT	1 cut(s)	388
Sse9I	AATT	5 cut(s)	23, 298, 382, 502, 564
SsiI	CCGC	1 cut(s)	273
SspMI	CTAG	1 cut(s)	389
StyD4I	CCNGG	1 cut(s)	522
StyI	CCWWGG	1 cut(s)	214
TaaI	ACNGT	1 cut(s)	487
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	2 cut(s)	552, 610
TasI	AATT	5 cut(s)	23, 298, 382, 502, 564
TatI	WGTACW	1 cut(s)	259
TfiI	GAWTC	1 cut(s)	97
Tru1I	TTAA	4 cut(s)	21, 185, 282, 434
Tru9I	TTAA	4 cut(s)	21, 185, 282, 434
TscAI	CASTG	1 cut(s)	706
TseFI	GTSAC	3 cut(s)	5, 370, 391
TseI	GCWGC	2 cut(s)	29, 56
Tsp45I	GTSAC	3 cut(s)	5, 370, 391
TspDTI	ATGAA	3 cut(s)	251, 647, 699
TspGWI	ACGGA	2 cut(s)	102, 646
TspRI	CASTG	1 cut(s)	706
Van91I	CCANNNNNTGG	1 cut(s)	215
VpaK11BI	GGWCC	1 cut(s)	219
XapI	RAATTY	3 cut(s)	23, 502, 564
XceI	RCATGY	1 cut(s)	152
XhoI	CTCGAG	1 cut(s)	551
XmnI	GAANNNNTTC	1 cut(s)	96
XspI	CTAG	1 cut(s)	389
ZraI	GACGTC	1 cut(s)	10
Zsp2I	ATGCAT	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.