Rmu_sc0007474.1_g000020
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007474.1
OG0016170
Physical Location & Seq
Reverse (-)
65941 .. 66909
969 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 969 bp
atggccacaccaccctcacccaccgcctcgccctccgcctccccagtctccaccaccgccaccaagaagccccacccgatcccctggacccaccaagaaaccgtccacctaatccagtcctaccaggacaaatggtacgaactccgccgaggtcagctcaaggccagccaatgggaggaggtcgccgtcaccgtcgccgcccgatgcggctacgactacaccgagccctccaagaccgccacccagtgccgccacaagatggagaagctccgccagcgtcaccgctccgtcaagaagcgcctcggcctcagcttcgggtcgggttggccctacttcgatctcatggagcggctcgaacagggccccatgcccatctccgccagacggccgtaccaggaggaggaggaggacgacgaagaagccgaagaagaagaaccctacttcgatctcatggagcggctcgaacagggccccatgcccatctccgccagacggccgtaccaggaggaggaggaggaggacgaagaagccgaagaagaagaagaagcggaggatcatggcggcgaagaagaagaggttgatgaggaggaagaagacaactacaggaagttgcagagtcttgattacattctgaggagacccgcaattgtgaacagattttcttccggagcaaaagagggccactttcgggactcggcggcggcgaaaaggccgagggaggcggccgcagacgacgacggctactacggcgatgtggtggatgggcagagaggaacagagatggtggtggagctggcgacggagataagggggtttgcgaaaaggctgattggggtggagaatatgaggatggagatcatgagggaaacggagaggtgtagattagagatggagaataaacggattgatatgattcttcaatcgcagcgcaaaattgttgattccatcgacagggcttttgggctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

322

Amino Acids

37.37

Weight (kDa)

4.79

Isoelectric Point (pI)

78.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 29 - 118 2.8e-15 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24860
fragaria_vesca FvH4_2g18920
malus_domestica MD05G1174500.v1.1 MD10G1163600.v1.1
prunus_persica Prupe.8G201900_v2.0.a1
pyrus_communis pycom05g16130
rosa_chinensis RchiOBHm_Chr6g0284711
rosa_laevigata RLG00000012726
rosa_multiflora Rmu_sc0007474.1_g000020
rosa_rugosa Rorug06G0165800
rosa_samantha Rh6AG278800 Rh6BG278900 Rh6CG281200 Rh6DG273800
rosa_wichuraiana Rw6G023970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 171, 259
AccBSI CCGCTC 3 cut(s) 285, 349, 457
AccIII TCCGGA 1 cut(s) 665
AclWI GGATC 2 cut(s) 73, 561
AcoI YGGCCR 4 cut(s) 3, 386, 494, 723
AdeI CACNNNGTG 1 cut(s) 246
AfaI GTAC 3 cut(s) 137, 392, 500
AfiI CCNNNNNNNGG 9 cut(s) 171, 175, 259, 384, 400, 492, 508, 688, 951
AgsI TTSAA 1 cut(s) 920
AjnI CCWGG 4 cut(s) 83, 123, 393, 501
AluBI AGCT 4 cut(s) 157, 268, 312, 793
AluI AGCT 4 cut(s) 157, 268, 312, 793
Alw26I GTCTC 2 cut(s) 52, 631
AlwI GGATC 2 cut(s) 73, 561
Aor13HI TCCGGA 1 cut(s) 665
ApaI GGGCCC 2 cut(s) 365, 473
ApeKI GCWGC 1 cut(s) 925
ArsI GACNNNNNNTTYG 1 cut(s) 941
AspLEI GCGC 2 cut(s) 300, 930
AspS9I GGNCC 7 cut(s) 87, 327, 361, 362, 469, 470, 679
AsuHPI GGTGA 3 cut(s) 9, 181, 272
AvaII GGWCC 1 cut(s) 87
BaeGI GKGCMC 2 cut(s) 365, 473
BaeI ACNNNNGTAYC 4 cut(s) 374, 407, 482, 515
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 3 cut(s) 228, 365, 473
BbsI GAAGAC 1 cut(s) 600
BbvCI CCTCAGC 1 cut(s) 308
BbvI GCAGC 1 cut(s) 937
BccI CCATC 8 cut(s) 253, 380, 488, 755, 775, 844, 883, 953
BceAI ACGGC 7 cut(s) 170, 373, 401, 481, 509, 754, 763
BciT130I CCWGG 4 cut(s) 85, 125, 395, 503
BcoDI GTCTC 2 cut(s) 52, 631
BfmI CTRYAG 1 cut(s) 601
BfoI RGCGCY 1 cut(s) 301
Bme1390I CCNGG 4 cut(s) 85, 125, 395, 503
Bme18I GGWCC 1 cut(s) 87
BmgT120I GGNCC 7 cut(s) 87, 327, 361, 362, 469, 470, 679
BmiI GGNNCC 5 cut(s) 89, 363, 364, 471, 472
BmrFI CCNGG 4 cut(s) 85, 125, 395, 503
BmrI ACTGGG 2 cut(s) 38, 238
BmsI GCATC 1 cut(s) 194
BmuI ACTGGG 2 cut(s) 38, 238
BpiI GAAGAC 1 cut(s) 600
BplI GAGNNNNNCTC 2 cut(s) 141, 173
Bpu10I CCTNAGC 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 143
BsaBI GATNNNNATC 1 cut(s) 854
BsaI GGTCTC 1 cut(s) 631
BsaJI CCNNGG 4 cut(s) 83, 148, 301, 713
BsaWI WCCGGW 1 cut(s) 665
Bsc4I CCNNNNNNNGG 9 cut(s) 171, 175, 259, 384, 400, 492, 508, 688, 951
Bse1I ACTGG 3 cut(s) 44, 115, 244
Bse8I GATNNNNATC 1 cut(s) 854
BseAI TCCGGA 1 cut(s) 665
BseBI CCWGG 4 cut(s) 85, 125, 395, 503
BseDI CCNNGG 4 cut(s) 83, 148, 301, 713
BseGI GGATG 2 cut(s) 766, 855
BseJI GATNNNNATC 1 cut(s) 854
BseLI CCNNNNNNNGG 9 cut(s) 171, 175, 259, 384, 400, 492, 508, 688, 951
BseMII CTCAG 2 cut(s) 322, 623
BseNI ACTGG 3 cut(s) 44, 115, 244
BseSI GKGCMC 2 cut(s) 365, 473
BseX3I CGGCCG 3 cut(s) 386, 494, 723
BseXI GCAGC 1 cut(s) 937
Bsh1285I CGRYCG 3 cut(s) 389, 497, 726
BsiEI CGRYCG 3 cut(s) 389, 497, 726
BsiSI CCGG 1 cut(s) 666
BslFI GGGAC 1 cut(s) 704
BslI CCNNNNNNNGG 9 cut(s) 171, 175, 259, 384, 400, 492, 508, 688, 951
BsmAI GTCTC 2 cut(s) 52, 631
BsmFI GGGAC 1 cut(s) 704
Bso31I GGTCTC 1 cut(s) 631
Bsp120I GGGCCC 2 cut(s) 361, 469
Bsp1286I GDGCHC 3 cut(s) 228, 365, 473
Bsp13I TCCGGA 1 cut(s) 665
Bsp143I GATC 5 cut(s) 78, 337, 445, 553, 855
BspCNI CTCAG 2 cut(s) 321, 624
BspEI TCCGGA 1 cut(s) 665
BspHI TCATGA 1 cut(s) 858
BspLI GGNNCC 5 cut(s) 89, 363, 364, 471, 472
BspPI GGATC 2 cut(s) 73, 561
BspTNI GGTCTC 1 cut(s) 631
BsrBI CCGCTC 3 cut(s) 285, 349, 457
BsrI ACTGG 3 cut(s) 44, 115, 244
BssECI CCNNGG 4 cut(s) 83, 148, 301, 713
BssMI GATC 5 cut(s) 78, 337, 445, 553, 855
Bst2UI CCWGG 4 cut(s) 85, 125, 395, 503
Bst4CI ACNGT 2 cut(s) 103, 193
Bst6I CTCTTC 1 cut(s) 567
BstC8I GCNNGC 3 cut(s) 166, 275, 795
BstDEI CTNAG 2 cut(s) 308, 632
BstF5I GGATG 2 cut(s) 766, 855
BstH2I RGCGCY 1 cut(s) 301
BstHHI GCGC 2 cut(s) 300, 930
BstKTI GATC 5 cut(s) 81, 340, 448, 556, 858
BstMAI GTCTC 2 cut(s) 52, 631
BstMBI GATC 5 cut(s) 78, 337, 445, 553, 855
BstMCI CGRYCG 3 cut(s) 389, 497, 726
BstMWI GCNNNNNNNGC 2 cut(s) 274, 747
BstNI CCWGG 4 cut(s) 85, 125, 395, 503
BstSCI CCNGG 4 cut(s) 83, 123, 393, 501
BstSFI CTRYAG 1 cut(s) 601
BstSLI GKGCMC 2 cut(s) 365, 473
BstV1I GCAGC 1 cut(s) 937
BstV2I GAAGAC 1 cut(s) 600
BstZI CGGCCG 3 cut(s) 386, 494, 723
BtgZI GCGATG 1 cut(s) 765
BtsCI GGATG 2 cut(s) 766, 855
BtsIMutI CAGTG 1 cut(s) 251
Cac8I GCNNGC 3 cut(s) 166, 275, 795
CciI TCATGA 1 cut(s) 858
CciNI GCGGCCGC 1 cut(s) 723
CfoI GCGC 2 cut(s) 300, 930
Cfr13I GGNCC 7 cut(s) 87, 327, 361, 362, 469, 470, 679
CseI GACGC 1 cut(s) 266
Csp6I GTAC 3 cut(s) 136, 391, 499
CviAII CATG 6 cut(s) 343, 367, 451, 475, 557, 859
CviQI GTAC 3 cut(s) 136, 391, 499
DdeI CTNAG 2 cut(s) 308, 632
DpnI GATC 5 cut(s) 80, 339, 447, 555, 857
DpnII GATC 5 cut(s) 78, 337, 445, 553, 855
DraIII CACNNNGTG 1 cut(s) 246
EaeI YGGCCR 4 cut(s) 3, 386, 494, 723
EagI CGGCCG 3 cut(s) 386, 494, 723
Eam1104I CTCTTC 1 cut(s) 567
EarI CTCTTC 1 cut(s) 567
EciI GGCGGA 5 cut(s) 25, 134, 260, 367, 475
EclXI CGGCCG 3 cut(s) 386, 494, 723
Eco24I GRGCYC 3 cut(s) 228, 365, 473
Eco31I GGTCTC 1 cut(s) 631
Eco47I GGWCC 1 cut(s) 87
Eco52I CGGCCG 3 cut(s) 386, 494, 723
EcoO109I RGGNCCY 4 cut(s) 361, 362, 469, 470
EcoRII CCWGG 4 cut(s) 83, 123, 393, 501
EcoT38I GRGCYC 3 cut(s) 228, 365, 473
FaeI CATG 6 cut(s) 346, 370, 454, 478, 560, 862
FaiI YATR 8 cut(s) 344, 368, 452, 476, 558, 845, 860, 911
FaqI GGGAC 1 cut(s) 704
FatI CATG 6 cut(s) 342, 366, 450, 474, 556, 858
FauI CCCGC 1 cut(s) 649
FokI GGATG 2 cut(s) 773, 862
FriOI GRGCYC 3 cut(s) 228, 365, 473
GlaI GCGC 2 cut(s) 299, 929
HaeII RGCGCY 1 cut(s) 301
HapII CCGG 1 cut(s) 666
HgaI GACGC 1 cut(s) 266
HhaI GCGC 2 cut(s) 300, 930
Hin1II CATG 6 cut(s) 346, 370, 454, 478, 560, 862
Hin6I GCGC 2 cut(s) 298, 928
HinP1I GCGC 2 cut(s) 298, 928
HinfI GANTC 4 cut(s) 616, 692, 913, 941
HpaII CCGG 1 cut(s) 666
HphI GGTGA 3 cut(s) 9, 181, 272
Hpy166II GTNNAC 2 cut(s) 106, 652
Hpy188I TCNGA 1 cut(s) 633
Hpy188III TCNNGA 5 cut(s) 292, 620, 666, 689, 859
Hpy8I GTNNAC 2 cut(s) 106, 652
Hpy99I CGWCG 5 cut(s) 197, 416, 737, 740, 802
HpyCH4III ACNGT 2 cut(s) 103, 193
HpyCH4V TGCA 1 cut(s) 613
HpyF10VI GCNNNNNNNGC 2 cut(s) 274, 747
HpyF3I CTNAG 2 cut(s) 308, 632
Hsp92II CATG 6 cut(s) 346, 370, 454, 478, 560, 862
HspAI GCGC 2 cut(s) 298, 928
Kpn2I TCCGGA 1 cut(s) 665
Kzo9I GATC 5 cut(s) 78, 337, 445, 553, 855
LmnI GCTCC 6 cut(s) 273, 290, 346, 454, 668, 790
Lsp1109I GCAGC 1 cut(s) 937
LweI GCATC 1 cut(s) 194
MaeIII GTNAC 2 cut(s) 187, 278
MalI GATC 5 cut(s) 80, 339, 447, 555, 857
MbiI CCGCTC 3 cut(s) 285, 349, 457
MboI GATC 5 cut(s) 78, 337, 445, 553, 855
MfeI CAATTG 1 cut(s) 645
MhlI GDGCHC 3 cut(s) 228, 365, 473
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 645, 933
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 625, 686
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 665
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 666
MspR9I CCNGG 4 cut(s) 85, 125, 395, 503
MunI CAATTG 1 cut(s) 645
MvaI CCWGG 4 cut(s) 85, 125, 395, 503
MwoI GCNNNNNNNGC 2 cut(s) 274, 747
NdeII GATC 5 cut(s) 78, 337, 445, 553, 855
NlaIII CATG 6 cut(s) 346, 370, 454, 478, 560, 862
NlaIV GGNNCC 5 cut(s) 89, 363, 364, 471, 472
NmeAIII GCCGAG 4 cut(s) 173, 282, 674, 738
NmuCI GTSAC 2 cut(s) 187, 278
NotI GCGGCCGC 1 cut(s) 723
PagI TCATGA 1 cut(s) 858
PcsI WCGNNNNNNNCGW 5 cut(s) 189, 219, 420, 528, 701
PfeI GAWTC 2 cut(s) 913, 941
PflMI CCANNNNNTGG 2 cut(s) 171, 259
PleI GAGTC 2 cut(s) 624, 686
PpsI GAGTC 2 cut(s) 624, 686
Psp6I CCWGG 4 cut(s) 83, 123, 393, 501
PspGI CCWGG 4 cut(s) 83, 123, 393, 501
PspN4I GGNNCC 5 cut(s) 89, 363, 364, 471, 472
PspOMI GGGCCC 2 cut(s) 361, 469
PspPI GGNCC 7 cut(s) 87, 327, 361, 362, 469, 470, 679
RsaI GTAC 3 cut(s) 137, 392, 500
RsaNI GTAC 3 cut(s) 136, 391, 499
Sau3AI GATC 5 cut(s) 78, 337, 445, 553, 855
Sau96I GGNCC 7 cut(s) 87, 327, 361, 362, 469, 470, 679
SchI GAGTC 2 cut(s) 625, 686
ScrFI CCNGG 4 cut(s) 85, 125, 395, 503
SduI GDGCHC 3 cut(s) 228, 365, 473
SetI ASST 9 cut(s) 111, 154, 159, 183, 270, 314, 579, 795, 878
SfaNI GCATC 1 cut(s) 194
SfcI CTRYAG 1 cut(s) 601
SinI GGWCC 1 cut(s) 87
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 2 cut(s) 645, 933
StyD4I CCNGG 4 cut(s) 83, 123, 393, 501
TaaI ACNGT 2 cut(s) 103, 193
TaqI TCGA 5 cut(s) 336, 354, 444, 462, 948
TasI AATT 2 cut(s) 645, 933
TfiI GAWTC 2 cut(s) 913, 941
TscAI CASTG 1 cut(s) 251
TseFI GTSAC 2 cut(s) 187, 278
TseI GCWGC 1 cut(s) 925
Tsp45I GTSAC 2 cut(s) 187, 278
TspGWI ACGGA 4 cut(s) 277, 815, 884, 916
TspRI CASTG 1 cut(s) 251
Van91I CCANNNNNTGG 2 cut(s) 171, 259
VpaK11BI GGWCC 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.