Rmu_sc0007475.1_g000001

PX domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007475.1
N/A
Physical Location & Seq
Reverse (-)
1 .. 562
562 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 282 bp
atgaatctctacgctcacgacctctctctcctcgacttcaacttcaacttgtccgatcccatttccgatcccttctcccaccgcaccacttctttcttttccgaaactgcccctaccgacgacgacgacgacgacggcggcggcgacgcctctgatggcagaggcaggaacagaaccaacggtaagcgcgtggagcgcagtcccagccctcccaagttccgccacgacggcacctcgcctctccctctcggaatggattggagccctccgcctcgcaaatgg

Protein Analysis

94

Amino Acids

10.49

Weight (kDa)

4.91

Isoelectric Point (pI)

51.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 230
AccII CGCG 1 cut(s) 189
AciI CCGC 5 cut(s) 82, 138, 141, 220, 269
AclWI GGATC 2 cut(s) 50, 62
AcyI GRCGYC 1 cut(s) 147
AgsI TTSAA 2 cut(s) 40, 46
AlwI GGATC 2 cut(s) 50, 62
AspLEI GCGC 2 cut(s) 189, 198
BanI GGYRCC 1 cut(s) 230
BanII GRGCYC 1 cut(s) 266
BccI CCATC 1 cut(s) 149
BceAI ACGGC 2 cut(s) 151, 244
BglI GCCNNNNNGGC 1 cut(s) 228
BisI GCNGC 2 cut(s) 139, 142
BlsI GCNGC 2 cut(s) 140, 143
BmiI GGNNCC 2 cut(s) 232, 263
BsaHI GRCGYC 1 cut(s) 147
BseRI GAGGAG 1 cut(s) 20
BseYI CCCAGC 1 cut(s) 203
Bsh1236I CGCG 1 cut(s) 189
BshNI GGYRCC 1 cut(s) 230
BslFI GGGAC 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 266
Bsp143I GATC 2 cut(s) 55, 67
BspACI CCGC 5 cut(s) 82, 138, 141, 220, 269
BspFNI CGCG 1 cut(s) 189
BspLI GGNNCC 2 cut(s) 232, 263
BspPI GGATC 2 cut(s) 50, 62
BspT107I GGYRCC 1 cut(s) 230
BssMI GATC 2 cut(s) 55, 67
BssNI GRCGYC 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 182
BstACI GRCGYC 1 cut(s) 147
BstFNI CGCG 1 cut(s) 189
BstHHI GCGC 2 cut(s) 189, 198
BstKTI GATC 2 cut(s) 58, 70
BstMBI GATC 2 cut(s) 55, 67
BstMWI GCNNNNNNNGC 4 cut(s) 193, 195, 204, 228
BstUI CGCG 1 cut(s) 189
CfoI GCGC 2 cut(s) 189, 198
CseI GACGC 1 cut(s) 155
CviJI RGCY 2 cut(s) 207, 264
CviKI_1 RGCY 2 cut(s) 207, 264
DpnI GATC 2 cut(s) 57, 69
DpnII GATC 2 cut(s) 55, 67
EciI GGCGGA 2 cut(s) 209, 258
Eco24I GRGCYC 1 cut(s) 266
EcoT38I GRGCYC 1 cut(s) 266
FaqI GGGAC 1 cut(s) 186
Fnu4HI GCNGC 2 cut(s) 139, 142
FriOI GRGCYC 1 cut(s) 266
Fsp4HI GCNGC 2 cut(s) 139, 142
GlaI GCGC 2 cut(s) 188, 197
GluI GCNGC 2 cut(s) 139, 142
GsaI CCCAGC 1 cut(s) 207
HgaI GACGC 1 cut(s) 155
HhaI GCGC 2 cut(s) 189, 198
Hin1I GRCGYC 1 cut(s) 147
Hin6I GCGC 2 cut(s) 187, 196
HinP1I GCGC 2 cut(s) 187, 196
HinfI GANTC 1 cut(s) 4
Hpy188I TCNGA 5 cut(s) 55, 67, 103, 154, 251
Hpy188III TCNNGA 1 cut(s) 17
Hpy99I CGWCG 8 cut(s) 122, 125, 128, 131, 134, 137, 149, 230
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 4 cut(s) 193, 195, 204, 228
Hsp92I GRCGYC 1 cut(s) 147
HspAI GCGC 2 cut(s) 187, 196
Kzo9I GATC 2 cut(s) 55, 67
LmnI GCTCC 2 cut(s) 193, 261
LpnPI CCDG 2 cut(s) 151, 217
MalI GATC 2 cut(s) 57, 69
MboI GATC 2 cut(s) 55, 67
MhlI GDGCHC 1 cut(s) 266
MvnI CGCG 1 cut(s) 189
MwoI GCNNNNNNNGC 4 cut(s) 193, 195, 204, 228
NdeII GATC 2 cut(s) 55, 67
NlaIV GGNNCC 2 cut(s) 232, 263
PcsI WCGNNNNNNNCGW 4 cut(s) 126, 129, 141, 186
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 2 cut(s) 140, 143
PspFI CCCAGC 1 cut(s) 203
PspN4I GGNNCC 2 cut(s) 232, 263
SatI GCNGC 2 cut(s) 139, 142
Sau3AI GATC 2 cut(s) 55, 67
SduI GDGCHC 1 cut(s) 266
SetI ASST 2 cut(s) 24, 236
SsiI CCGC 5 cut(s) 82, 138, 141, 220, 269
TaaI ACNGT 1 cut(s) 182
TaqI TCGA 1 cut(s) 33
TauI GCSGC 2 cut(s) 141, 144
TfiI GAWTC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.