Rmu_sc0007533.1_g000018

LAG1 longevity assurance homolog 3-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007533.1
N/A
Physical Location & Seq
Forward (+)
49813 .. 50808
996 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 429 bp
atgctcatgattctcaaacaaagattttcccgagttggttcaatcattttagccctccatgaaggatctgatgtgtttttagaaattgcgaaactgtcaaaatattgtggcttagaactgattgccagcgtttcttttgttatctttgttctttcttggacagttctacgtcttatttactttcccttctggataatttggagtaccagctatgaatctcttttgaatttggacaaggaaaagcacatggtggatggatctatatattattacttgtttaatactcttctaatttgcttgctcattcttcatatttattggtggaagttgatggtttggatgctcataaagcaaatccgctcatgggggaaacttgatgatgatgttcgatctgattccgaaagtgatgatgatgaacacgatgattga

Protein Analysis

142

Amino Acids

16.88

Weight (kDa)

5.1

Isoelectric Point (pI)

33.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAM_LAG1_CLN8 PF03798 7 - 112 4.1e-23 TLC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 360
AciI CCGC 1 cut(s) 358
AclWI GGATC 2 cut(s) 73, 265
AcsI RAATTY 1 cut(s) 226
AdeI CACNNNGTG 1 cut(s) 250
AfaI GTAC 1 cut(s) 205
AfiI CCNNNNNNNGG 1 cut(s) 364
AgsI TTSAA 2 cut(s) 42, 226
AluBI AGCT 1 cut(s) 210
AluI AGCT 1 cut(s) 210
AlwI GGATC 2 cut(s) 73, 265
Ama87I CYCGRG 1 cut(s) 30
ApoI RAATTY 1 cut(s) 226
AvaI CYCGRG 1 cut(s) 30
BccI CCATC 2 cut(s) 248, 325
BmeT110I CYCGRG 1 cut(s) 30
BmsI GCATC 1 cut(s) 330
Bsc4I CCNNNNNNNGG 1 cut(s) 364
BseGI GGATG 2 cut(s) 259, 345
BseLI CCNNNNNNNGG 1 cut(s) 364
BsiHKCI CYCGRG 1 cut(s) 30
BslI CCNNNNNNNGG 1 cut(s) 364
BsoBI CYCGRG 1 cut(s) 30
Bsp143I GATC 3 cut(s) 65, 257, 389
BspACI CCGC 1 cut(s) 358
BspHI TCATGA 1 cut(s) 6
BspPI GGATC 2 cut(s) 73, 265
BsrBI CCGCTC 1 cut(s) 360
BssMI GATC 3 cut(s) 65, 257, 389
Bst4CI ACNGT 2 cut(s) 96, 163
Bst6I CTCTTC 1 cut(s) 291
BstC8I GCNNGC 2 cut(s) 127, 299
BstDEI CTNAG 1 cut(s) 112
BstF5I GGATG 2 cut(s) 259, 345
BstKTI GATC 3 cut(s) 68, 260, 392
BstMBI GATC 3 cut(s) 65, 257, 389
BstMWI GCNNNNNNNGC 1 cut(s) 349
BstX2I RGATCY 2 cut(s) 65, 257
BstYI RGATCY 2 cut(s) 65, 257
BtsCI GGATG 2 cut(s) 259, 345
Cac8I GCNNGC 2 cut(s) 127, 299
CciI TCATGA 1 cut(s) 6
Csp6I GTAC 1 cut(s) 204
CviAII CATG 4 cut(s) 7, 59, 247, 363
CviJI RGCY 3 cut(s) 53, 111, 210
CviKI_1 RGCY 3 cut(s) 53, 111, 210
CviQI GTAC 1 cut(s) 204
DdeI CTNAG 1 cut(s) 112
DpnI GATC 3 cut(s) 67, 259, 391
DpnII GATC 3 cut(s) 65, 257, 389
DraIII CACNNNGTG 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
Eco88I CYCGRG 1 cut(s) 30
FaeI CATG 4 cut(s) 10, 62, 250, 366
FaiI YATR 9 cut(s) 8, 60, 213, 248, 263, 265, 312, 347, 364
FatI CATG 4 cut(s) 6, 58, 246, 362
FokI GGATG 2 cut(s) 266, 352
Hin1II CATG 4 cut(s) 10, 62, 250, 366
HinfI GANTC 3 cut(s) 10, 215, 395
Hpy188I TCNGA 3 cut(s) 70, 394, 400
Hpy188III TCNNGA 3 cut(s) 7, 30, 190
HpyAV CCTTC 2 cut(s) 56, 196
HpyCH4III ACNGT 2 cut(s) 96, 163
HpyCH4IV ACGT 1 cut(s) 169
HpyF10VI GCNNNNNNNGC 1 cut(s) 349
HpyF3I CTNAG 1 cut(s) 112
HpySE526I ACGT 1 cut(s) 169
Hsp92II CATG 4 cut(s) 10, 62, 250, 366
Kzo9I GATC 3 cut(s) 65, 257, 389
LpnPI CCDG 3 cut(s) 139, 175, 220
LweI GCATC 1 cut(s) 330
MaeII ACGT 1 cut(s) 169
MalI GATC 3 cut(s) 67, 259, 391
MbiI CCGCTC 1 cut(s) 360
MboI GATC 3 cut(s) 65, 257, 389
MboII GAAGA 2 cut(s) 278, 299
MflI RGATCY 2 cut(s) 65, 257
MluCI AATT 4 cut(s) 84, 195, 226, 291
MnlI CCTC 1 cut(s) 65
MseI TTAA 1 cut(s) 279
MwoI GCNNNNNNNGC 1 cut(s) 349
NdeII GATC 3 cut(s) 65, 257, 389
NlaIII CATG 4 cut(s) 10, 62, 250, 366
PagI TCATGA 1 cut(s) 6
PfeI GAWTC 3 cut(s) 10, 215, 395
PsuI RGATCY 2 cut(s) 65, 257
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
SaqAI TTAA 1 cut(s) 279
Sau3AI GATC 3 cut(s) 65, 257, 389
SetI ASST 2 cut(s) 172, 212
SfaNI GCATC 1 cut(s) 330
Sse9I AATT 4 cut(s) 84, 195, 226, 291
SsiI CCGC 1 cut(s) 358
SspI AATATT 1 cut(s) 104
TaaI ACNGT 2 cut(s) 96, 163
TaiI ACGT 1 cut(s) 172
TaqI TCGA 1 cut(s) 388
TasI AATT 4 cut(s) 84, 195, 226, 291
TfiI GAWTC 3 cut(s) 10, 215, 395
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TspDTI ATGAA 4 cut(s) 75, 228, 299, 429
XapI RAATTY 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.