Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007543.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4876 .. 10409

Gene Structure 5534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

atgaactgggatgggagacatgggataccactggttcagtcacaattacaagggagtaggagcacaaaaatatgtgttggctatatcatcttccacaacgcaaaaagccacggacccatttcaatattttggagaggttttacggaaagaggtgggcttcgctcgttaaaggtcgagcatttctaccagtggaagaaagagtggtgcttggtgattgatgtttgtaaaactgggagtgaattctgggtttggtgcaaagagttgtatttgtacgctggcttcttcagctgtgttgagaaggcaacagttggtgataaggtgtcttggagttggaggattggtggtgtcactatacttaggaaaggaaaagctgacctcattagtgatggtgagatagttgaatcagtgagcatatatggttctcctcgaagatgtggtggacagggagatatactttctggaagtgttgctgtatttctttcatgggcccgtcaaattgtcacagatgagaatctgagtatcagttcccgaaaccccacaatgttgggttgcattgctggctccactttaatgaggaaggctgcatccctcgcttttgagaataagaaaaggtcaactcttactactgacatcatagaatgcttgggaagaagtttgcaggatatttgtccagttccctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0016835 GO:0016836 GO:0016853 GO:0016854 GO:0019362 GO:0019637 GO:0019674 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0047453 GO:0051186 GO:0052856 GO:0052857 GO:0055086 GO:0071704 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Carb_kinase

Protein Analysis

226

Amino Acids

25.19

Weight (kDa)

9.08

Isoelectric Point (pI)

44.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Carb_kinase	PF01256	115 - 214	9.1e-10	NAD(P)H-hydrate dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	239
AcuI	CTGAAG	1 cut(s)	268
AfaI	GTAC	1 cut(s)	272
AgsI	TTSAA	2 cut(s)	123, 401
AluBI	AGCT	2 cut(s)	288, 371
AluI	AGCT	2 cut(s)	288, 371
Alw21I	GWGCWC	1 cut(s)	65
Alw26I	GTCTC	1 cut(s)	10
AoxI	GGCC	1 cut(s)	486
ApaI	GGGCCC	1 cut(s)	490
ApeKI	GCWGC	1 cut(s)	581
ApoI	RAATTY	1 cut(s)	239
AspS9I	GGNCC	3 cut(s)	113, 486, 487
AsuHPI	GGTGA	3 cut(s)	223, 323, 401
AvaII	GGWCC	1 cut(s)	113
BaeGI	GKGCMC	1 cut(s)	490
BanII	GRGCYC	1 cut(s)	490
BarI	GAAGNNNNNNTAC	2 cut(s)	263, 295
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	1 cut(s)	568
BccI	CCATC	2 cut(s)	5, 380
BciVI	GTATCC	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	10
BfuI	GTATCC	1 cut(s)	18
BisI	GCNGC	1 cut(s)	582
BlsI	GCNGC	1 cut(s)	583
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	3 cut(s)	113, 486, 487
BmiI	GGNNCC	3 cut(s)	115, 488, 562
BmrI	ACTGGG	2 cut(s)	16, 240
BmsI	GCATC	1 cut(s)	593
BmuI	ACTGGG	2 cut(s)	16, 240
BsaBI	GATNNNNATC	1 cut(s)	510
BsaJI	CCNNGG	1 cut(s)	109
BsaXI	ACNNNNNCTCC	2 cut(s)	325, 355
Bse1I	ACTGG	5 cut(s)	11, 36, 187, 235, 671
Bse3DI	GCAATG	1 cut(s)	552
Bse8I	GATNNNNATC	1 cut(s)	510
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	2 cut(s)	16, 584
BseJI	GATNNNNATC	1 cut(s)	510
BseMI	GCAATG	1 cut(s)	552
BseMII	CTCAG	1 cut(s)	506
BseNI	ACTGG	5 cut(s)	11, 36, 187, 235, 671
BseRI	GAGGAG	1 cut(s)	414
BseSI	GKGCMC	1 cut(s)	490
BseXI	GCAGC	1 cut(s)	568
BshFI	GGCC	1 cut(s)	488
BsiHKAI	GWGCWC	1 cut(s)	65
BsmAI	GTCTC	1 cut(s)	10
BsmI	GAATGC	1 cut(s)	644
BsnI	GGCC	1 cut(s)	488
Bsp120I	GGGCCC	1 cut(s)	486
Bsp1286I	GDGCHC	2 cut(s)	65, 490
BspANI	GGCC	1 cut(s)	488
BspCNI	CTCAG	1 cut(s)	507
BspLI	GGNNCC	3 cut(s)	115, 488, 562
BsrDI	GCAATG	1 cut(s)	552
BsrI	ACTGG	5 cut(s)	11, 36, 187, 235, 671
BssECI	CCNNGG	1 cut(s)	109
Bst4CI	ACNGT	1 cut(s)	307
BstC8I	GCNNGC	2 cut(s)	277, 559
BstDEI	CTNAG	2 cut(s)	356, 515
BstDSI	CCRYGG	1 cut(s)	109
BstF5I	GGATG	2 cut(s)	16, 584
BstMAI	GTCTC	1 cut(s)	10
BstMWI	GCNNNNNNNGC	3 cut(s)	285, 558, 590
BstSLI	GKGCMC	1 cut(s)	490
BstV1I	GCAGC	1 cut(s)	568
BstXI	CCANNNNNNTGG	1 cut(s)	544
BsuI	GTATCC	1 cut(s)	18
BsuRI	GGCC	1 cut(s)	488
BtgI	CCRYGG	1 cut(s)	109
BtsCI	GGATG	2 cut(s)	16, 584
BtsIMutI	CAGTG	3 cut(s)	29, 194, 411
Cac8I	GCNNGC	2 cut(s)	277, 559
Cfr13I	GGNCC	3 cut(s)	113, 486, 487
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	2 cut(s)	20, 483
CviJI	RGCY	9 cut(s)	81, 108, 157, 279, 288, 371, 488, 561, 581
CviKI_1	RGCY	9 cut(s)	81, 108, 157, 279, 288, 371, 488, 561, 581
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	2 cut(s)	356, 515
Eco24I	GRGCYC	1 cut(s)	490
Eco47I	GGWCC	1 cut(s)	113
Eco57I	CTGAAG	1 cut(s)	268
EcoRI	GAATTC	1 cut(s)	239
EcoT38I	GRGCYC	1 cut(s)	490
FaeI	CATG	2 cut(s)	23, 486
FatI	CATG	2 cut(s)	19, 482
Fnu4HI	GCNGC	1 cut(s)	582
FokI	GGATG	2 cut(s)	23, 571
FriOI	GRGCYC	1 cut(s)	490
Fsp4HI	GCNGC	1 cut(s)	582
GluI	GCNGC	1 cut(s)	582
HaeIII	GGCC	1 cut(s)	488
Hin1II	CATG	2 cut(s)	23, 486
HincII	GTYRAC	1 cut(s)	615
HindII	GTYRAC	1 cut(s)	615
HinfI	GANTC	2 cut(s)	401, 511
HphI	GGTGA	3 cut(s)	223, 323, 401
Hpy166II	GTNNAC	2 cut(s)	440, 615
Hpy188I	TCNGA	1 cut(s)	516
Hpy188III	TCNNGA	2 cut(s)	459, 528
Hpy8I	GTNNAC	2 cut(s)	440, 615
HpyAV	CCTTC	2 cut(s)	292, 571
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4V	TGCA	4 cut(s)	255, 552, 584, 658
HpyF10VI	GCNNNNNNNGC	3 cut(s)	285, 558, 590
HpyF3I	CTNAG	2 cut(s)	356, 515
Hsp92II	CATG	2 cut(s)	23, 486
LmnI	GCTCC	2 cut(s)	60, 566
LpnPI	CCDG	9 cut(s)	17, 200, 216, 229, 261, 428, 444, 543, 644
Lsp1109I	GCAGC	1 cut(s)	568
LweI	GCATC	1 cut(s)	593
MaeIII	GTNAC	3 cut(s)	39, 346, 499
MboII	GAAGA	5 cut(s)	82, 205, 274, 441, 660
MhlI	GDGCHC	2 cut(s)	65, 490
MluCI	AATT	3 cut(s)	44, 239, 495
MmeI	TCCRAC	1 cut(s)	311
MnlI	CCTC	7 cut(s)	128, 143, 327, 386, 435, 567, 599
MseI	TTAA	2 cut(s)	167, 569
MslI	CAYNNNNRTG	1 cut(s)	569
MspA1I	CMGCKG	1 cut(s)	288
Mva1269I	GAATGC	1 cut(s)	644
MwoI	GCNNNNNNNGC	3 cut(s)	285, 558, 590
NlaIII	CATG	2 cut(s)	23, 486
NlaIV	GGNNCC	3 cut(s)	115, 488, 562
NmuCI	GTSAC	3 cut(s)	39, 346, 499
PctI	GAATGC	1 cut(s)	644
PfeI	GAWTC	2 cut(s)	401, 511
PkrI	GCNGC	1 cut(s)	583
PspN4I	GGNNCC	3 cut(s)	115, 488, 562
PspOMI	GGGCCC	1 cut(s)	486
PspPI	GGNCC	3 cut(s)	113, 486, 487
PvuII	CAGCTG	1 cut(s)	288
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	569
SaqAI	TTAA	2 cut(s)	167, 569
SatI	GCNGC	1 cut(s)	582
Sau96I	GGNCC	3 cut(s)	113, 486, 487
SduI	GDGCHC	2 cut(s)	65, 490
SetI	ASST	8 cut(s)	139, 154, 174, 290, 321, 373, 378, 614
SfaNI	GCATC	1 cut(s)	593
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	569
Sse9I	AATT	3 cut(s)	44, 239, 495
SspI	AATATT	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	307
TaqI	TCGA	2 cut(s)	174, 427
TasI	AATT	3 cut(s)	44, 239, 495
TfiI	GAWTC	2 cut(s)	401, 511
Tru1I	TTAA	2 cut(s)	167, 569
Tru9I	TTAA	2 cut(s)	167, 569
TscAI	CASTG	3 cut(s)	36, 194, 411
TseFI	GTSAC	3 cut(s)	39, 346, 499
TseI	GCWGC	1 cut(s)	581
Tsp45I	GTSAC	3 cut(s)	39, 346, 499
TspDTI	ATGAA	2 cut(s)	17, 471
TspGWI	ACGGA	2 cut(s)	126, 158
TspRI	CASTG	3 cut(s)	36, 194, 411
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.